Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20270 and CA264_20275 are separated by 213 nucleotides CA264_20275 and CA264_20280 are separated by 86 nucleotides CA264_20280 and CA264_20285 overlap by 9 nucleotides
CA264_20270: CA264_20270 - hypothetical protein, at 4,674,321 to 4,675,253
_20270
CA264_20275: CA264_20275 - DNA-binding protein, at 4,675,467 to 4,675,802
_20275
CA264_20280: CA264_20280 - hypothetical protein, at 4,675,889 to 4,676,635
_20280
CA264_20285: CA264_20285 - hypothetical protein, at 4,676,627 to 4,676,851
_20285
Position (kb) 4675
4676 Strain fitness (log2 ratio) -1
0
1 at 4674.467 kb on + strand, within CA264_20270 at 4674.495 kb on + strand, within CA264_20270 at 4674.506 kb on + strand, within CA264_20270 at 4674.507 kb on - strand, within CA264_20270 at 4674.558 kb on + strand, within CA264_20270 at 4674.559 kb on - strand, within CA264_20270 at 4674.644 kb on + strand, within CA264_20270 at 4674.645 kb on - strand, within CA264_20270 at 4674.932 kb on + strand, within CA264_20270 at 4674.933 kb on - strand, within CA264_20270 at 4674.933 kb on - strand, within CA264_20270 at 4674.999 kb on + strand, within CA264_20270 at 4675.156 kb on + strand, within CA264_20270 at 4675.156 kb on + strand, within CA264_20270 at 4675.191 kb on + strand at 4675.191 kb on + strand at 4675.191 kb on + strand at 4675.245 kb on + strand at 4675.245 kb on + strand at 4675.246 kb on - strand at 4675.268 kb on + strand at 4675.274 kb on - strand at 4675.326 kb on - strand at 4675.332 kb on + strand at 4675.333 kb on - strand at 4675.346 kb on + strand at 4675.352 kb on - strand at 4675.414 kb on - strand at 4675.416 kb on - strand at 4675.438 kb on - strand at 4675.488 kb on + strand at 4675.488 kb on + strand at 4675.488 kb on + strand at 4675.603 kb on + strand, within CA264_20275 at 4675.633 kb on + strand, within CA264_20275 at 4675.836 kb on - strand at 4675.890 kb on + strand at 4675.902 kb on + strand at 4675.903 kb on - strand at 4675.938 kb on + strand at 4675.939 kb on - strand at 4675.962 kb on - strand at 4676.058 kb on + strand, within CA264_20280 at 4676.058 kb on + strand, within CA264_20280 at 4676.081 kb on + strand, within CA264_20280 at 4676.081 kb on + strand, within CA264_20280 at 4676.177 kb on + strand, within CA264_20280 at 4676.178 kb on - strand, within CA264_20280 at 4676.258 kb on + strand, within CA264_20280 at 4676.258 kb on + strand, within CA264_20280 at 4676.265 kb on + strand, within CA264_20280 at 4676.266 kb on - strand, within CA264_20280 at 4676.266 kb on - strand, within CA264_20280 at 4676.305 kb on + strand, within CA264_20280 at 4676.306 kb on - strand, within CA264_20280 at 4676.306 kb on - strand, within CA264_20280 at 4676.324 kb on + strand, within CA264_20280 at 4676.324 kb on + strand, within CA264_20280 at 4676.324 kb on + strand, within CA264_20280 at 4676.432 kb on + strand, within CA264_20280 at 4676.527 kb on + strand, within CA264_20280 at 4676.751 kb on + strand, within CA264_20285 at 4676.751 kb on + strand, within CA264_20285
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 4,674,467 + CA264_20270 0.16 -0.4 4,674,495 + CA264_20270 0.19 -0.0 4,674,506 + CA264_20270 0.20 -0.7 4,674,507 - CA264_20270 0.20 +0.2 4,674,558 + CA264_20270 0.25 +1.3 4,674,559 - CA264_20270 0.26 -1.0 4,674,644 + CA264_20270 0.35 +0.2 4,674,645 - CA264_20270 0.35 -1.3 4,674,932 + CA264_20270 0.65 +0.0 4,674,933 - CA264_20270 0.66 -1.1 4,674,933 - CA264_20270 0.66 -0.5 4,674,999 + CA264_20270 0.73 +0.2 4,675,156 + CA264_20270 0.89 -0.1 4,675,156 + CA264_20270 0.89 +0.7 4,675,191 + -1.1 4,675,191 + -0.8 4,675,191 + -0.3 4,675,245 + +1.0 4,675,245 + -0.6 4,675,246 - +0.3 4,675,268 + -0.3 4,675,274 - -0.8 4,675,326 - -0.2 4,675,332 + +0.2 4,675,333 - +0.4 4,675,346 + -0.1 4,675,352 - +0.7 4,675,414 - -0.0 4,675,416 - -1.2 4,675,438 - +0.6 4,675,488 + +0.8 4,675,488 + -0.8 4,675,488 + +0.9 4,675,603 + CA264_20275 0.40 +0.0 4,675,633 + CA264_20275 0.49 +0.4 4,675,836 - -0.0 4,675,890 + +0.7 4,675,902 + -0.4 4,675,903 - -0.5 4,675,938 + +0.5 4,675,939 - -0.8 4,675,962 - +1.0 4,676,058 + CA264_20280 0.23 +0.3 4,676,058 + CA264_20280 0.23 -0.7 4,676,081 + CA264_20280 0.26 -0.2 4,676,081 + CA264_20280 0.26 +0.2 4,676,177 + CA264_20280 0.39 +0.0 4,676,178 - CA264_20280 0.39 -0.3 4,676,258 + CA264_20280 0.49 +0.0 4,676,258 + CA264_20280 0.49 -0.0 4,676,265 + CA264_20280 0.50 -1.2 4,676,266 - CA264_20280 0.50 -0.6 4,676,266 - CA264_20280 0.50 +0.9 4,676,305 + CA264_20280 0.56 +1.1 4,676,306 - CA264_20280 0.56 -0.4 4,676,306 - CA264_20280 0.56 +0.7 4,676,324 + CA264_20280 0.58 +0.1 4,676,324 + CA264_20280 0.58 +0.2 4,676,324 + CA264_20280 0.58 -0.9 4,676,432 + CA264_20280 0.73 -0.3 4,676,527 + CA264_20280 0.85 +0.1 4,676,751 + CA264_20285 0.55 +0.5 4,676,751 + CA264_20285 0.55 -0.9
Or see this region's nucleotide sequence