Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20005 and CA264_20010 are separated by 178 nucleotides CA264_20010 and CA264_20015 overlap by 8 nucleotides
CA264_20005: CA264_20005 - endonuclease/exonuclease/phosphatase, at 4,612,036 to 4,613,136
_20005
CA264_20010: CA264_20010 - gliding motility lipoprotein GldH, at 4,613,315 to 4,613,800
_20010
CA264_20015: CA264_20015 - Signal peptidase-like protein, at 4,613,793 to 4,615,244
_20015
Position (kb)
4613
4614 Strain fitness (log2 ratio)
-2
-1
0
1 at 4612.322 kb on + strand, within CA264_20005 at 4612.386 kb on + strand, within CA264_20005 at 4612.539 kb on + strand, within CA264_20005 at 4612.649 kb on + strand, within CA264_20005 at 4612.649 kb on + strand, within CA264_20005 at 4612.649 kb on + strand, within CA264_20005 at 4612.649 kb on + strand, within CA264_20005 at 4612.650 kb on - strand, within CA264_20005 at 4612.650 kb on - strand, within CA264_20005 at 4612.650 kb on - strand, within CA264_20005 at 4612.671 kb on + strand, within CA264_20005 at 4612.793 kb on + strand, within CA264_20005 at 4612.794 kb on - strand, within CA264_20005 at 4612.877 kb on - strand, within CA264_20005 at 4612.907 kb on + strand, within CA264_20005 at 4612.907 kb on + strand, within CA264_20005 at 4612.908 kb on - strand, within CA264_20005 at 4612.908 kb on - strand, within CA264_20005 at 4612.908 kb on - strand, within CA264_20005 at 4612.913 kb on - strand, within CA264_20005 at 4612.950 kb on + strand, within CA264_20005 at 4612.951 kb on - strand, within CA264_20005 at 4612.951 kb on - strand, within CA264_20005 at 4612.956 kb on - strand, within CA264_20005 at 4612.972 kb on + strand, within CA264_20005 at 4612.979 kb on + strand, within CA264_20005 at 4612.979 kb on + strand, within CA264_20005 at 4612.979 kb on + strand, within CA264_20005 at 4612.991 kb on + strand, within CA264_20005 at 4612.991 kb on + strand, within CA264_20005 at 4613.002 kb on + strand, within CA264_20005 at 4613.024 kb on - strand, within CA264_20005 at 4613.107 kb on - strand at 4613.113 kb on + strand at 4613.114 kb on - strand at 4613.114 kb on - strand at 4613.119 kb on + strand at 4613.119 kb on + strand at 4613.120 kb on - strand at 4613.121 kb on + strand at 4613.122 kb on - strand at 4613.167 kb on - strand at 4613.233 kb on + strand at 4613.251 kb on - strand at 4613.311 kb on + strand at 4613.316 kb on + strand at 4613.316 kb on + strand at 4613.412 kb on + strand, within CA264_20010 at 4613.412 kb on + strand, within CA264_20010 at 4613.412 kb on + strand, within CA264_20010 at 4613.466 kb on + strand, within CA264_20010 at 4613.583 kb on + strand, within CA264_20010 at 4613.592 kb on + strand, within CA264_20010 at 4613.595 kb on + strand, within CA264_20010 at 4613.596 kb on - strand, within CA264_20010 at 4613.611 kb on + strand, within CA264_20010 at 4613.611 kb on + strand, within CA264_20010 at 4613.651 kb on - strand, within CA264_20010 at 4613.688 kb on - strand, within CA264_20010 at 4613.728 kb on - strand, within CA264_20010 at 4614.583 kb on + strand, within CA264_20015
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 4,612,322 + CA264_20005 0.26 -0.5 4,612,386 + CA264_20005 0.32 +0.5 4,612,539 + CA264_20005 0.46 +0.5 4,612,649 + CA264_20005 0.56 -0.3 4,612,649 + CA264_20005 0.56 -0.4 4,612,649 + CA264_20005 0.56 +0.0 4,612,649 + CA264_20005 0.56 +0.3 4,612,650 - CA264_20005 0.56 -0.7 4,612,650 - CA264_20005 0.56 -0.9 4,612,650 - CA264_20005 0.56 +0.2 4,612,671 + CA264_20005 0.58 +0.7 4,612,793 + CA264_20005 0.69 -0.0 4,612,794 - CA264_20005 0.69 +0.1 4,612,877 - CA264_20005 0.76 -0.6 4,612,907 + CA264_20005 0.79 -0.1 4,612,907 + CA264_20005 0.79 +0.7 4,612,908 - CA264_20005 0.79 -0.5 4,612,908 - CA264_20005 0.79 -0.6 4,612,908 - CA264_20005 0.79 -1.3 4,612,913 - CA264_20005 0.80 -0.2 4,612,950 + CA264_20005 0.83 +0.3 4,612,951 - CA264_20005 0.83 -0.2 4,612,951 - CA264_20005 0.83 +0.0 4,612,956 - CA264_20005 0.84 +1.3 4,612,972 + CA264_20005 0.85 -0.4 4,612,979 + CA264_20005 0.86 -0.5 4,612,979 + CA264_20005 0.86 -0.1 4,612,979 + CA264_20005 0.86 -1.0 4,612,991 + CA264_20005 0.87 -0.2 4,612,991 + CA264_20005 0.87 +0.3 4,613,002 + CA264_20005 0.88 +0.2 4,613,024 - CA264_20005 0.90 +0.3 4,613,107 - +0.6 4,613,113 + -0.1 4,613,114 - +0.1 4,613,114 - -0.1 4,613,119 + +0.7 4,613,119 + -0.9 4,613,120 - -0.3 4,613,121 + -0.3 4,613,122 - -1.0 4,613,167 - +0.3 4,613,233 + -0.1 4,613,251 - -0.1 4,613,311 + +0.3 4,613,316 + -1.4 4,613,316 + +0.1 4,613,412 + CA264_20010 0.20 +0.9 4,613,412 + CA264_20010 0.20 -1.7 4,613,412 + CA264_20010 0.20 -1.3 4,613,466 + CA264_20010 0.31 -0.2 4,613,583 + CA264_20010 0.55 -0.2 4,613,592 + CA264_20010 0.57 -1.8 4,613,595 + CA264_20010 0.58 -1.2 4,613,596 - CA264_20010 0.58 -0.5 4,613,611 + CA264_20010 0.61 -1.4 4,613,611 + CA264_20010 0.61 -1.8 4,613,651 - CA264_20010 0.69 -0.5 4,613,688 - CA264_20010 0.77 -1.2 4,613,728 - CA264_20010 0.85 -1.8 4,614,583 + CA264_20015 0.54 -0.1
Or see this region's nucleotide sequence