Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17910

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17905 and CA264_17910 are separated by 2 nucleotidesCA264_17910 and CA264_17915 are separated by 23 nucleotides CA264_17905: CA264_17905 - UDP-glucose 4-epimerase GalE, at 4,162,651 to 4,163,685 _17905 CA264_17910: CA264_17910 - dTDP-glucose 4,6-dehydratase, at 4,163,688 to 4,164,737 _17910 CA264_17915: CA264_17915 - LPS biosynthesis protein WbpP, at 4,164,761 to 4,165,786 _17915 Position (kb) 4163 4164 4165Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4162.690 kb on + strandat 4162.691 kb on - strandat 4162.692 kb on + strandat 4162.693 kb on - strandat 4162.712 kb on + strandat 4162.722 kb on - strandat 4162.733 kb on - strandat 4162.799 kb on + strand, within CA264_17905at 4162.800 kb on - strand, within CA264_17905at 4162.800 kb on - strand, within CA264_17905at 4162.909 kb on + strand, within CA264_17905at 4162.910 kb on - strand, within CA264_17905at 4162.911 kb on + strand, within CA264_17905at 4162.912 kb on - strand, within CA264_17905at 4162.920 kb on - strandat 4162.948 kb on + strand, within CA264_17905at 4162.948 kb on + strand, within CA264_17905at 4162.948 kb on + strand, within CA264_17905at 4163.011 kb on - strand, within CA264_17905at 4163.044 kb on + strand, within CA264_17905at 4163.044 kb on + strand, within CA264_17905at 4163.044 kb on + strand, within CA264_17905at 4163.175 kb on - strand, within CA264_17905at 4163.175 kb on - strand, within CA264_17905at 4163.275 kb on - strand, within CA264_17905at 4163.292 kb on - strand, within CA264_17905at 4163.362 kb on + strand, within CA264_17905at 4163.362 kb on + strand, within CA264_17905at 4163.363 kb on - strand, within CA264_17905at 4163.527 kb on + strand, within CA264_17905at 4163.579 kb on + strand, within CA264_17905at 4163.579 kb on + strand, within CA264_17905at 4163.579 kb on + strand, within CA264_17905at 4163.586 kb on - strandat 4163.635 kb on - strandat 4163.661 kb on - strandat 4164.685 kb on + strandat 4164.709 kb on - strandat 4164.725 kb on + strandat 4164.758 kb on + strandat 4164.759 kb on - strandat 4164.760 kb on + strandat 4164.760 kb on + strandat 4164.869 kb on - strand, within CA264_17915at 4164.923 kb on - strand, within CA264_17915at 4164.991 kb on + strand, within CA264_17915at 4165.079 kb on - strand, within CA264_17915at 4165.262 kb on + strand, within CA264_17915at 4165.520 kb on + strand, within CA264_17915at 4165.698 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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4,162,690 + -0.9
4,162,691 - +0.8
4,162,692 + -0.7
4,162,693 - +0.4
4,162,712 + -0.9
4,162,722 - +1.0
4,162,733 - +0.8
4,162,799 + CA264_17905 0.14 +0.7
4,162,800 - CA264_17905 0.14 +0.9
4,162,800 - CA264_17905 0.14 +0.1
4,162,909 + CA264_17905 0.25 +0.7
4,162,910 - CA264_17905 0.25 +0.1
4,162,911 + CA264_17905 0.25 +1.6
4,162,912 - CA264_17905 0.25 -0.2
4,162,920 - +0.5
4,162,948 + CA264_17905 0.29 -0.7
4,162,948 + CA264_17905 0.29 +1.5
4,162,948 + CA264_17905 0.29 +0.2
4,163,011 - CA264_17905 0.35 +0.9
4,163,044 + CA264_17905 0.38 -0.1
4,163,044 + CA264_17905 0.38 -0.4
4,163,044 + CA264_17905 0.38 -1.7
4,163,175 - CA264_17905 0.51 -0.0
4,163,175 - CA264_17905 0.51 +0.7
4,163,275 - CA264_17905 0.60 +1.2
4,163,292 - CA264_17905 0.62 +1.8
4,163,362 + CA264_17905 0.69 +1.1
4,163,362 + CA264_17905 0.69 -0.7
4,163,363 - CA264_17905 0.69 +0.4
4,163,527 + CA264_17905 0.85 +0.1
4,163,579 + CA264_17905 0.90 +0.5
4,163,579 + CA264_17905 0.90 -0.7
4,163,579 + CA264_17905 0.90 +1.3
4,163,586 - +0.4
4,163,635 - +1.0
4,163,661 - +0.7
4,164,685 + -0.0
4,164,709 - +0.5
4,164,725 + +0.5
4,164,758 + -0.2
4,164,759 - -1.1
4,164,760 + -0.1
4,164,760 + -0.5
4,164,869 - CA264_17915 0.11 -3.4
4,164,923 - CA264_17915 0.16 -0.7
4,164,991 + CA264_17915 0.22 -0.2
4,165,079 - CA264_17915 0.31 -1.4
4,165,262 + CA264_17915 0.49 -2.2
4,165,520 + CA264_17915 0.74 +0.1
4,165,698 + -0.1

Or see this region's nucleotide sequence