Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12060

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,804,417	+		CA264_12055	0.42	-2.2
2,804,418	-		CA264_12055	0.42	-3.0
2,804,667	+		CA264_12055	0.67	-4.6
2,804,956	-				+0.4
2,804,995	+				-1.7
2,805,007	+				+0.3
2,805,054	+				+0.1
2,805,055	-				+0.1
2,805,105	-				-0.6
2,805,105	-				+0.1
2,805,161	+				-0.3
2,805,219	-				+0.2
2,805,295	+				-0.0
2,805,319	+				+0.6
2,805,320	-				-2.4
2,805,403	+				-0.2
2,805,467	+				-0.4
2,805,468	-				-0.3
2,805,491	+				+0.4
2,805,492	-				-0.5
2,805,670	+				-0.4
2,805,749	+		CA264_12060	0.10	-0.7
2,805,749	+		CA264_12060	0.10	-0.1
2,805,811	+		CA264_12060	0.11	-0.9
2,805,913	+		CA264_12060	0.13	+0.3
2,806,196	+		CA264_12060	0.19	+0.8
2,806,197	-		CA264_12060	0.19	-0.4
2,806,302	-		CA264_12060	0.21	+0.2
2,806,524	+		CA264_12060	0.25	-0.7
2,806,525	+		CA264_12060	0.25	+0.4
2,806,556	+		CA264_12060	0.26	-0.4
2,806,556	+		CA264_12060	0.26	-0.1
2,806,557	-		CA264_12060	0.26	+2.4
2,806,557	-		CA264_12060	0.26	+0.2
2,806,605	-		CA264_12060	0.27	-0.2
2,806,619	+		CA264_12060	0.27	+0.0
2,806,620	-		CA264_12060	0.27	-0.7
2,806,688	+		CA264_12060	0.29	+0.1
2,806,688	+		CA264_12060	0.29	+0.4
2,806,721	+		CA264_12060	0.29	+1.7
2,806,767	-		CA264_12060	0.30	-0.5
2,806,767	-		CA264_12060	0.30	-0.5
2,806,776	+		CA264_12060	0.30	-1.4
2,807,073	-		CA264_12060	0.36	+0.1
2,807,124	+		CA264_12060	0.37	+0.0
2,807,124	+		CA264_12060	0.37	+0.7
2,807,125	-		CA264_12060	0.37	+0.0
2,807,128	+		CA264_12060	0.37	+0.1
2,807,137	+		CA264_12060	0.38	-0.3
2,807,137	+		CA264_12060	0.38	-0.2
2,807,138	-		CA264_12060	0.38	-0.1
2,807,143	+		CA264_12060	0.38	-0.2
2,807,144	-		CA264_12060	0.38	-0.0
2,807,201	+		CA264_12060	0.39	+0.1
2,807,342	+		CA264_12060	0.42	-0.4
2,807,531	+		CA264_12060	0.45	+0.0
2,807,629	-		CA264_12060	0.47	-0.7
2,807,646	+		CA264_12060	0.48	+0.1
2,807,647	-		CA264_12060	0.48	-0.5
2,807,740	+		CA264_12060	0.50	-0.4
2,807,741	-		CA264_12060	0.50	-0.9
2,807,803	+		CA264_12060	0.51	-0.2
2,807,805	+		CA264_12060	0.51	+0.5
2,807,805	+		CA264_12060	0.51	+0.6
2,807,805	+		CA264_12060	0.51	-0.0
2,808,100	+		CA264_12060	0.57	-0.5
2,808,101	-		CA264_12060	0.57	-0.7
2,808,128	-		CA264_12060	0.57	+0.0
2,808,128	-		CA264_12060	0.57	-1.0
2,808,230	+		CA264_12060	0.59	+0.5
2,808,230	+		CA264_12060	0.59	-0.6
2,808,231	-		CA264_12060	0.59	-0.8
2,808,231	-		CA264_12060	0.59	-0.7
2,808,319	-		CA264_12060	0.61	-0.9
2,808,374	-		CA264_12060	0.62	-0.3
2,808,440	+		CA264_12060	0.63	+0.3
2,808,440	+		CA264_12060	0.63	+0.8
2,808,440	+		CA264_12060	0.63	+0.5
2,808,441	-		CA264_12060	0.63	-0.0
2,808,585	-		CA264_12060	0.66	-0.3
2,808,829	+		CA264_12060	0.71	+1.2
2,808,830	-		CA264_12060	0.71	+0.0
2,808,858	-		CA264_12060	0.72	+1.0
2,808,908	+		CA264_12060	0.73	-0.4
2,808,908	+		CA264_12060	0.73	+0.3
2,808,908	+		CA264_12060	0.73	+0.7
2,808,909	-		CA264_12060	0.73	+0.2
2,808,910	+		CA264_12060	0.73	-0.2
2,808,910	+		CA264_12060	0.73	-0.5
2,808,910	+		CA264_12060	0.73	+0.7
2,808,910	+		CA264_12060	0.73	+0.0
2,808,910	+		CA264_12060	0.73	-0.1
2,808,911	-		CA264_12060	0.73	-0.1
2,808,911	-		CA264_12060	0.73	+0.5
2,808,914	-		CA264_12060	0.73	-0.6
2,808,925	+		CA264_12060	0.73	-0.9
2,808,945	+		CA264_12060	0.73	+1.2
2,808,946	-		CA264_12060	0.73	+0.8
2,808,948	-		CA264_12060	0.73	+0.6
2,808,948	-		CA264_12060	0.73	-0.7
2,808,948	-		CA264_12060	0.73	-0.1
2,809,174	+		CA264_12060	0.78	+0.3
2,809,174	+		CA264_12060	0.78	+0.8
2,809,174	+		CA264_12060	0.78	+0.0
2,809,174	+		CA264_12060	0.78	+0.4
2,809,175	-		CA264_12060	0.78	-0.6
2,809,175	-		CA264_12060	0.78	-1.0
2,809,175	-		CA264_12060	0.78	-1.4
2,809,175	-		CA264_12060	0.78	+0.5
2,809,175	-		CA264_12060	0.78	-0.1
2,809,175	-		CA264_12060	0.78	-0.8
2,809,175	-		CA264_12060	0.78	+0.4
2,809,175	-		CA264_12060	0.78	+0.1
2,809,175	-		CA264_12060	0.78	-0.5
2,809,271	+		CA264_12060	0.80	-0.9
2,809,272	-		CA264_12060	0.80	-2.2
2,809,389	+		CA264_12060	0.82	-0.1
2,809,438	+		CA264_12060	0.83	-0.4
2,809,541	+		CA264_12060	0.85	+0.0
2,809,542	-		CA264_12060	0.85	-1.2
2,809,558	-		CA264_12060	0.86	+0.9
2,809,858	+				-0.6
2,809,990	-				-1.1
2,809,990	-				-0.1
2,810,023	+				-0.5
2,810,024	-				-1.0
2,810,132	-				-0.2
2,810,132	-				-0.1
2,810,277	+				+0.3
2,810,279	+				+0.4
2,810,280	-				-0.4
2,810,284	+				-0.1
2,810,285	-				-1.2
2,810,285	-				-0.3
2,810,288	+				-0.4
2,810,293	+				-0.5
2,810,323	+				-1.7
2,810,324	-				-0.4
2,810,347	+				-0.2
2,810,348	-				-0.2
2,810,348	-				-0.2
2,810,488	-				-0.8
2,810,524	-				-0.8
2,810,524	-				-0.1
2,810,552	+		CA264_12065	0.11	+0.6
2,810,553	-		CA264_12065	0.11	-0.1
2,810,553	-		CA264_12065	0.11	+0.3
2,810,564	+		CA264_12065	0.11	+0.3
2,810,564	+		CA264_12065	0.11	+0.6
2,810,694	-		CA264_12065	0.17	-0.3
2,810,727	+		CA264_12065	0.18	+1.2
2,810,749	+		CA264_12065	0.19	-0.2
2,810,798	+		CA264_12065	0.21	+0.8
2,810,800	+		CA264_12065	0.21	-0.8
2,810,823	+		CA264_12065	0.22	-0.4
2,810,916	+		CA264_12065	0.26	-0.9
2,810,945	+		CA264_12065	0.27	+0.4
2,810,946	-		CA264_12065	0.27	+0.7
2,810,946	-		CA264_12065	0.27	+1.4
2,810,972	+		CA264_12065	0.28	-1.0
2,811,012	+		CA264_12065	0.30	-0.3
2,811,012	+		CA264_12065	0.30	+1.2
2,811,053	-		CA264_12065	0.32	-0.9
2,811,077	+		CA264_12065	0.33	-0.2
2,811,078	-		CA264_12065	0.33	-0.1
2,811,078	-		CA264_12065	0.33	-0.4
2,811,137	-		CA264_12065	0.35	-0.2
2,811,144	-		CA264_12065	0.36	-1.2
2,811,149	+		CA264_12065	0.36	+0.7
2,811,149	+		CA264_12065	0.36	-0.4
2,811,150	-		CA264_12065	0.36	+0.6
2,811,150	-		CA264_12065	0.36	-0.8
2,811,168	-		CA264_12065	0.37	+0.0
2,811,222	-		CA264_12065	0.39	-0.3