Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08320 and CA264_08325 are separated by 74 nucleotides CA264_08325 and CA264_08330 are separated by 158 nucleotides CA264_08330 and CA264_08335 are separated by 75 nucleotides CA264_08335 and CA264_08340 are separated by 228 nucleotides CA264_08340 and CA264_08345 are separated by 197 nucleotides
CA264_08320: CA264_08320 - hypothetical protein, at 1,924,080 to 1,925,078
_08320
CA264_08325: CA264_08325 - SIMPL domain-containing protein, at 1,925,153 to 1,925,869
_08325
CA264_08330: CA264_08330 - hypothetical protein, at 1,926,028 to 1,926,360
_08330
CA264_08335: CA264_08335 - hypothetical protein, at 1,926,436 to 1,926,711
_08335
CA264_08340: CA264_08340 - tRNA-Glu, at 1,926,940 to 1,927,014
_08340
CA264_08345: CA264_08345 - DNA-binding response regulator, at 1,927,212 to 1,927,919
_08345
Position (kb)
1926
1927 Strain fitness (log2 ratio)
-2
-1
0
1 at 1925.116 kb on + strand at 1925.120 kb on + strand at 1925.121 kb on - strand at 1925.145 kb on + strand at 1925.145 kb on + strand at 1925.236 kb on - strand, within CA264_08325 at 1925.254 kb on + strand, within CA264_08325 at 1925.255 kb on - strand, within CA264_08325 at 1925.263 kb on + strand, within CA264_08325 at 1925.266 kb on - strand, within CA264_08325 at 1925.310 kb on + strand, within CA264_08325 at 1925.311 kb on - strand, within CA264_08325 at 1925.327 kb on - strand, within CA264_08325 at 1925.403 kb on + strand, within CA264_08325 at 1925.404 kb on - strand, within CA264_08325 at 1925.404 kb on - strand, within CA264_08325 at 1925.536 kb on - strand, within CA264_08325 at 1925.575 kb on - strand, within CA264_08325 at 1925.724 kb on - strand, within CA264_08325 at 1925.840 kb on - strand at 1925.840 kb on - strand at 1925.876 kb on - strand at 1925.887 kb on + strand at 1925.888 kb on - strand at 1925.889 kb on + strand at 1925.889 kb on + strand at 1925.895 kb on - strand at 1925.910 kb on + strand at 1925.910 kb on + strand at 1925.910 kb on + strand at 1925.923 kb on + strand at 1925.923 kb on + strand at 1925.925 kb on + strand at 1925.926 kb on - strand at 1925.927 kb on + strand at 1925.963 kb on - strand at 1926.008 kb on + strand at 1926.008 kb on + strand at 1926.008 kb on + strand at 1926.009 kb on - strand at 1926.009 kb on - strand at 1926.009 kb on - strand at 1926.030 kb on - strand at 1926.041 kb on + strand at 1926.042 kb on - strand at 1926.063 kb on - strand, within CA264_08330 at 1926.111 kb on + strand, within CA264_08330 at 1926.111 kb on + strand, within CA264_08330 at 1926.171 kb on + strand, within CA264_08330 at 1926.223 kb on + strand, within CA264_08330 at 1926.237 kb on + strand, within CA264_08330 at 1926.237 kb on + strand, within CA264_08330 at 1926.237 kb on + strand, within CA264_08330 at 1926.238 kb on - strand, within CA264_08330 at 1926.238 kb on - strand, within CA264_08330 at 1926.313 kb on - strand, within CA264_08330 at 1926.349 kb on - strand at 1926.360 kb on + strand at 1926.361 kb on - strand at 1926.361 kb on - strand at 1926.382 kb on + strand at 1926.389 kb on - strand at 1926.389 kb on - strand at 1926.400 kb on + strand at 1926.402 kb on + strand at 1926.402 kb on + strand at 1926.402 kb on + strand at 1926.402 kb on + strand at 1926.403 kb on - strand at 1926.403 kb on - strand at 1926.413 kb on - strand at 1926.418 kb on - strand at 1926.495 kb on + strand, within CA264_08335 at 1926.513 kb on + strand, within CA264_08335 at 1926.514 kb on - strand, within CA264_08335 at 1926.578 kb on + strand, within CA264_08335 at 1926.578 kb on + strand, within CA264_08335 at 1926.578 kb on + strand, within CA264_08335 at 1926.578 kb on + strand, within CA264_08335 at 1926.578 kb on + strand, within CA264_08335 at 1926.578 kb on + strand, within CA264_08335 at 1926.578 kb on + strand, within CA264_08335 at 1926.578 kb on + strand, within CA264_08335 at 1926.579 kb on - strand, within CA264_08335 at 1926.579 kb on - strand, within CA264_08335 at 1926.579 kb on - strand, within CA264_08335 at 1926.579 kb on - strand, within CA264_08335 at 1926.579 kb on - strand, within CA264_08335 at 1926.583 kb on - strand, within CA264_08335 at 1926.638 kb on + strand, within CA264_08335 at 1926.638 kb on + strand, within CA264_08335 at 1926.693 kb on - strand at 1926.693 kb on - strand at 1926.728 kb on - strand at 1926.741 kb on - strand at 1926.749 kb on + strand at 1926.749 kb on + strand at 1927.057 kb on - strand at 1927.057 kb on - strand at 1927.059 kb on - strand at 1927.082 kb on + strand at 1927.122 kb on - strand at 1927.140 kb on + strand at 1927.141 kb on - strand at 1927.167 kb on + strand at 1927.194 kb on + strand at 1927.195 kb on - strand at 1927.195 kb on - strand at 1927.196 kb on + strand at 1927.196 kb on + strand at 1927.197 kb on - strand at 1927.214 kb on - strand at 1927.217 kb on + strand at 1927.218 kb on - strand at 1927.253 kb on + strand at 1927.254 kb on - strand at 1927.282 kb on - strand at 1927.302 kb on + strand, within CA264_08345 at 1927.303 kb on - strand, within CA264_08345 at 1927.310 kb on + strand, within CA264_08345 at 1927.327 kb on - strand, within CA264_08345 at 1927.328 kb on + strand, within CA264_08345 at 1927.331 kb on + strand, within CA264_08345 at 1927.332 kb on - strand, within CA264_08345 at 1927.333 kb on + strand, within CA264_08345 at 1927.334 kb on - strand, within CA264_08345 at 1927.340 kb on + strand, within CA264_08345 at 1927.340 kb on + strand, within CA264_08345 at 1927.340 kb on + strand, within CA264_08345 at 1927.341 kb on - strand, within CA264_08345
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,925,116 + +0.5 1,925,120 + +0.5 1,925,121 - -1.0 1,925,145 + -0.5 1,925,145 + -0.2 1,925,236 - CA264_08325 0.12 -2.3 1,925,254 + CA264_08325 0.14 -0.0 1,925,255 - CA264_08325 0.14 -0.1 1,925,263 + CA264_08325 0.15 +0.1 1,925,266 - CA264_08325 0.16 -0.1 1,925,310 + CA264_08325 0.22 +0.6 1,925,311 - CA264_08325 0.22 +1.2 1,925,327 - CA264_08325 0.24 -0.2 1,925,403 + CA264_08325 0.35 +0.2 1,925,404 - CA264_08325 0.35 -0.5 1,925,404 - CA264_08325 0.35 -0.8 1,925,536 - CA264_08325 0.53 -0.2 1,925,575 - CA264_08325 0.59 -0.6 1,925,724 - CA264_08325 0.80 +0.2 1,925,840 - +0.8 1,925,840 - -0.8 1,925,876 - -0.2 1,925,887 + -1.8 1,925,888 - -0.3 1,925,889 + -0.4 1,925,889 + +1.1 1,925,895 - -0.3 1,925,910 + -0.2 1,925,910 + +0.2 1,925,910 + -0.3 1,925,923 + -1.6 1,925,923 + -0.5 1,925,925 + -0.7 1,925,926 - +0.3 1,925,927 + +0.5 1,925,963 - -0.1 1,926,008 + +0.2 1,926,008 + -0.6 1,926,008 + -2.2 1,926,009 - +0.9 1,926,009 - +1.2 1,926,009 - +0.0 1,926,030 - -0.6 1,926,041 + +0.7 1,926,042 - +0.1 1,926,063 - CA264_08330 0.11 +0.7 1,926,111 + CA264_08330 0.25 +0.1 1,926,111 + CA264_08330 0.25 -0.5 1,926,171 + CA264_08330 0.43 +0.3 1,926,223 + CA264_08330 0.59 +0.2 1,926,237 + CA264_08330 0.63 +1.7 1,926,237 + CA264_08330 0.63 +0.3 1,926,237 + CA264_08330 0.63 +0.7 1,926,238 - CA264_08330 0.63 -1.0 1,926,238 - CA264_08330 0.63 -0.3 1,926,313 - CA264_08330 0.86 -0.3 1,926,349 - +0.1 1,926,360 + -0.0 1,926,361 - -0.1 1,926,361 - -0.1 1,926,382 + +0.1 1,926,389 - +0.1 1,926,389 - -0.1 1,926,400 + -0.0 1,926,402 + -0.0 1,926,402 + -1.3 1,926,402 + +0.4 1,926,402 + -0.6 1,926,403 - -0.3 1,926,403 - -0.7 1,926,413 - -0.2 1,926,418 - -0.5 1,926,495 + CA264_08335 0.21 -0.6 1,926,513 + CA264_08335 0.28 -0.8 1,926,514 - CA264_08335 0.28 -1.7 1,926,578 + CA264_08335 0.51 -0.6 1,926,578 + CA264_08335 0.51 -0.2 1,926,578 + CA264_08335 0.51 -1.2 1,926,578 + CA264_08335 0.51 -0.1 1,926,578 + CA264_08335 0.51 -0.4 1,926,578 + CA264_08335 0.51 +0.5 1,926,578 + CA264_08335 0.51 +0.1 1,926,578 + CA264_08335 0.51 +0.0 1,926,579 - CA264_08335 0.52 +0.7 1,926,579 - CA264_08335 0.52 -0.1 1,926,579 - CA264_08335 0.52 -0.4 1,926,579 - CA264_08335 0.52 +1.1 1,926,579 - CA264_08335 0.52 -0.1 1,926,583 - CA264_08335 0.53 +0.1 1,926,638 + CA264_08335 0.73 +0.1 1,926,638 + CA264_08335 0.73 +0.7 1,926,693 - -0.9 1,926,693 - -1.1 1,926,728 - -0.6 1,926,741 - -0.7 1,926,749 + -0.7 1,926,749 + -0.0 1,927,057 - +0.9 1,927,057 - -0.3 1,927,059 - +0.6 1,927,082 + -0.3 1,927,122 - -0.4 1,927,140 + +0.8 1,927,141 - +0.8 1,927,167 + +0.1 1,927,194 + +0.7 1,927,195 - -0.5 1,927,195 - -0.6 1,927,196 + +0.2 1,927,196 + -1.4 1,927,197 - +0.8 1,927,214 - -0.6 1,927,217 + +0.2 1,927,218 - -0.1 1,927,253 + -0.4 1,927,254 - -0.1 1,927,282 - -0.1 1,927,302 + CA264_08345 0.13 -0.1 1,927,303 - CA264_08345 0.13 -0.1 1,927,310 + CA264_08345 0.14 +0.9 1,927,327 - CA264_08345 0.16 +0.8 1,927,328 + CA264_08345 0.16 +0.3 1,927,331 + CA264_08345 0.17 +0.6 1,927,332 - CA264_08345 0.17 -0.4 1,927,333 + CA264_08345 0.17 -0.2 1,927,334 - CA264_08345 0.17 -0.0 1,927,340 + CA264_08345 0.18 +0.5 1,927,340 + CA264_08345 0.18 -1.0 1,927,340 + CA264_08345 0.18 +0.4 1,927,341 - CA264_08345 0.18 -0.1
Or see this region's nucleotide sequence