Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07340 and CA264_07345 are separated by 276 nucleotides CA264_07345 and CA264_07350 are separated by 76 nucleotides CA264_07350 and CA264_07355 are separated by 136 nucleotides CA264_07355 and CA264_07360 are separated by 65 nucleotides
CA264_07340: CA264_07340 - hypothetical protein, at 1,694,749 to 1,695,312
_07340
CA264_07345: CA264_07345 - hypothetical protein, at 1,695,589 to 1,696,164
_07345
CA264_07350: CA264_07350 - hypothetical protein, at 1,696,241 to 1,696,936
_07350
CA264_07355: CA264_07355 - hypothetical protein, at 1,697,073 to 1,697,798
_07355
CA264_07360: CA264_07360 - hypothetical protein, at 1,697,864 to 1,698,100
_07360
Position (kb)
1696
1697 Strain fitness (log2 ratio)
-2
-1
0
1 at 1695.241 kb on - strand, within CA264_07340 at 1695.286 kb on + strand at 1695.315 kb on + strand at 1695.315 kb on + strand at 1695.315 kb on + strand at 1695.316 kb on - strand at 1695.316 kb on - strand at 1695.333 kb on + strand at 1695.400 kb on + strand at 1695.401 kb on - strand at 1695.569 kb on - strand at 1695.598 kb on - strand at 1695.599 kb on + strand at 1695.600 kb on - strand at 1695.600 kb on - strand at 1695.618 kb on - strand at 1695.618 kb on - strand at 1695.620 kb on + strand at 1695.621 kb on - strand at 1695.624 kb on + strand at 1695.650 kb on + strand, within CA264_07345 at 1695.766 kb on - strand, within CA264_07345 at 1695.771 kb on - strand, within CA264_07345 at 1695.771 kb on - strand, within CA264_07345 at 1695.774 kb on + strand, within CA264_07345 at 1695.775 kb on - strand, within CA264_07345 at 1695.775 kb on - strand, within CA264_07345 at 1695.775 kb on - strand, within CA264_07345 at 1695.782 kb on + strand, within CA264_07345 at 1695.794 kb on + strand, within CA264_07345 at 1695.800 kb on + strand, within CA264_07345 at 1695.822 kb on - strand, within CA264_07345 at 1695.916 kb on - strand, within CA264_07345 at 1695.917 kb on + strand, within CA264_07345 at 1695.933 kb on - strand, within CA264_07345 at 1695.933 kb on - strand, within CA264_07345 at 1695.948 kb on - strand, within CA264_07345 at 1696.087 kb on - strand, within CA264_07345 at 1696.105 kb on - strand, within CA264_07345 at 1696.106 kb on + strand, within CA264_07345 at 1696.146 kb on + strand at 1696.147 kb on - strand at 1696.175 kb on + strand at 1696.176 kb on - strand at 1696.230 kb on - strand at 1696.242 kb on + strand at 1696.242 kb on + strand at 1696.243 kb on - strand at 1696.266 kb on + strand at 1696.267 kb on - strand at 1696.321 kb on - strand, within CA264_07350 at 1696.426 kb on - strand, within CA264_07350 at 1696.521 kb on + strand, within CA264_07350 at 1696.554 kb on + strand, within CA264_07350 at 1696.554 kb on + strand, within CA264_07350 at 1696.624 kb on - strand, within CA264_07350 at 1696.624 kb on - strand, within CA264_07350 at 1696.681 kb on - strand, within CA264_07350 at 1696.717 kb on - strand, within CA264_07350 at 1696.717 kb on - strand, within CA264_07350 at 1696.744 kb on + strand, within CA264_07350 at 1696.819 kb on - strand, within CA264_07350 at 1696.911 kb on + strand at 1696.912 kb on - strand at 1696.912 kb on - strand at 1696.915 kb on + strand at 1696.915 kb on + strand at 1696.916 kb on - strand at 1696.943 kb on - strand at 1696.948 kb on - strand at 1696.955 kb on + strand at 1696.955 kb on + strand at 1696.981 kb on - strand at 1697.072 kb on + strand at 1697.073 kb on - strand at 1697.102 kb on + strand at 1697.102 kb on + strand at 1697.103 kb on - strand at 1697.103 kb on - strand at 1697.107 kb on - strand at 1697.107 kb on - strand at 1697.266 kb on - strand, within CA264_07355 at 1697.268 kb on - strand, within CA264_07355 at 1697.291 kb on + strand, within CA264_07355 at 1697.291 kb on + strand, within CA264_07355 at 1697.292 kb on - strand, within CA264_07355 at 1697.292 kb on - strand, within CA264_07355 at 1697.292 kb on - strand, within CA264_07355 at 1697.301 kb on + strand, within CA264_07355 at 1697.302 kb on - strand, within CA264_07355 at 1697.313 kb on + strand, within CA264_07355 at 1697.314 kb on - strand, within CA264_07355 at 1697.355 kb on + strand, within CA264_07355 at 1697.355 kb on + strand, within CA264_07355 at 1697.385 kb on + strand, within CA264_07355 at 1697.509 kb on + strand, within CA264_07355 at 1697.510 kb on - strand, within CA264_07355 at 1697.569 kb on - strand, within CA264_07355 at 1697.593 kb on - strand, within CA264_07355 at 1697.640 kb on - strand, within CA264_07355 at 1697.644 kb on - strand, within CA264_07355 at 1697.668 kb on - strand, within CA264_07355 at 1697.697 kb on + strand, within CA264_07355 at 1697.709 kb on + strand, within CA264_07355 at 1697.709 kb on + strand, within CA264_07355 at 1697.712 kb on - strand, within CA264_07355 at 1697.791 kb on - strand at 1697.796 kb on + strand at 1697.796 kb on + strand at 1697.850 kb on + strand at 1697.851 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,695,241 - CA264_07340 0.87 -2.1 1,695,286 + -0.0 1,695,315 + +0.0 1,695,315 + -0.8 1,695,315 + -0.1 1,695,316 - -0.2 1,695,316 - -0.3 1,695,333 + -0.9 1,695,400 + -1.4 1,695,401 - -1.0 1,695,569 - -0.5 1,695,598 - +0.3 1,695,599 + -0.1 1,695,600 - -0.2 1,695,600 - +1.0 1,695,618 - -0.4 1,695,618 - -0.2 1,695,620 + -0.5 1,695,621 - +0.7 1,695,624 + +0.6 1,695,650 + CA264_07345 0.11 +0.6 1,695,766 - CA264_07345 0.31 -0.8 1,695,771 - CA264_07345 0.32 -0.2 1,695,771 - CA264_07345 0.32 +0.6 1,695,774 + CA264_07345 0.32 -1.1 1,695,775 - CA264_07345 0.32 -0.2 1,695,775 - CA264_07345 0.32 -0.4 1,695,775 - CA264_07345 0.32 -0.3 1,695,782 + CA264_07345 0.34 -0.1 1,695,794 + CA264_07345 0.36 +0.2 1,695,800 + CA264_07345 0.37 -0.2 1,695,822 - CA264_07345 0.40 -0.2 1,695,916 - CA264_07345 0.57 +0.2 1,695,917 + CA264_07345 0.57 +0.4 1,695,933 - CA264_07345 0.60 +1.1 1,695,933 - CA264_07345 0.60 -0.6 1,695,948 - CA264_07345 0.62 -0.2 1,696,087 - CA264_07345 0.86 -1.0 1,696,105 - CA264_07345 0.90 -0.7 1,696,106 + CA264_07345 0.90 +0.3 1,696,146 + -0.8 1,696,147 - +0.4 1,696,175 + +0.6 1,696,176 - -1.3 1,696,230 - -0.0 1,696,242 + +1.5 1,696,242 + +0.4 1,696,243 - -0.7 1,696,266 + +0.1 1,696,267 - -0.6 1,696,321 - CA264_07350 0.11 +0.7 1,696,426 - CA264_07350 0.27 +0.1 1,696,521 + CA264_07350 0.40 +0.1 1,696,554 + CA264_07350 0.45 -0.2 1,696,554 + CA264_07350 0.45 -0.8 1,696,624 - CA264_07350 0.55 +0.1 1,696,624 - CA264_07350 0.55 +0.2 1,696,681 - CA264_07350 0.63 -0.2 1,696,717 - CA264_07350 0.68 -0.4 1,696,717 - CA264_07350 0.68 -0.3 1,696,744 + CA264_07350 0.72 +0.3 1,696,819 - CA264_07350 0.83 -0.4 1,696,911 + +0.0 1,696,912 - +1.6 1,696,912 - -0.3 1,696,915 + -0.5 1,696,915 + -0.0 1,696,916 - -0.1 1,696,943 - -0.2 1,696,948 - -0.1 1,696,955 + -0.1 1,696,955 + -0.7 1,696,981 - +0.4 1,697,072 + -0.3 1,697,073 - +0.8 1,697,102 + -0.6 1,697,102 + -1.4 1,697,103 - +0.3 1,697,103 - +0.8 1,697,107 - -0.2 1,697,107 - +0.8 1,697,266 - CA264_07355 0.27 +0.8 1,697,268 - CA264_07355 0.27 -0.4 1,697,291 + CA264_07355 0.30 +0.1 1,697,291 + CA264_07355 0.30 -2.0 1,697,292 - CA264_07355 0.30 +0.7 1,697,292 - CA264_07355 0.30 +0.6 1,697,292 - CA264_07355 0.30 -0.4 1,697,301 + CA264_07355 0.31 +0.1 1,697,302 - CA264_07355 0.32 -0.1 1,697,313 + CA264_07355 0.33 +0.1 1,697,314 - CA264_07355 0.33 +0.3 1,697,355 + CA264_07355 0.39 -1.8 1,697,355 + CA264_07355 0.39 +0.2 1,697,385 + CA264_07355 0.43 -1.0 1,697,509 + CA264_07355 0.60 +1.1 1,697,510 - CA264_07355 0.60 +0.7 1,697,569 - CA264_07355 0.68 -0.2 1,697,593 - CA264_07355 0.72 +1.3 1,697,640 - CA264_07355 0.78 +0.3 1,697,644 - CA264_07355 0.79 -0.2 1,697,668 - CA264_07355 0.82 -1.0 1,697,697 + CA264_07355 0.86 +0.4 1,697,709 + CA264_07355 0.88 -0.3 1,697,709 + CA264_07355 0.88 +1.4 1,697,712 - CA264_07355 0.88 -0.2 1,697,791 - -0.5 1,697,796 + +1.1 1,697,796 + -0.7 1,697,850 + -0.3 1,697,851 - -0.3
Or see this region's nucleotide sequence