Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04555

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04545 and CA264_04550 are separated by 4 nucleotidesCA264_04550 and CA264_04555 are separated by 129 nucleotidesCA264_04555 and CA264_04560 are separated by 134 nucleotides CA264_04545: CA264_04545 - dTDP-Rha--alpha-D-GlcNAc-pyrophosphate polyprenol alpha-3-L-rhamnosyltransferase, at 1,049,757 to 1,050,764 _04545 CA264_04550: CA264_04550 - nucleoid-associated protein, YbaB/EbfC family, at 1,050,769 to 1,051,104 _04550 CA264_04555: CA264_04555 - T9SS C-terminal target domain-containing protein, at 1,051,234 to 1,053,171 _04555 CA264_04560: CA264_04560 - histidine ammonia-lyase, at 1,053,306 to 1,054,796 _04560 Position (kb) 1051 1052 1053 1054Strain fitness (log2 ratio) -2 -1 0 1 2at 1051.021 kb on - strand, within CA264_04550at 1051.095 kb on + strandat 1051.095 kb on + strandat 1051.095 kb on + strandat 1051.104 kb on + strandat 1051.122 kb on + strandat 1051.159 kb on + strandat 1051.159 kb on + strandat 1051.160 kb on - strandat 1051.167 kb on + strandat 1051.167 kb on + strandat 1051.169 kb on + strandat 1051.169 kb on + strandat 1051.197 kb on + strandat 1051.210 kb on + strandat 1051.296 kb on + strandat 1051.383 kb on + strandat 1051.384 kb on - strandat 1051.418 kb on + strandat 1051.452 kb on + strand, within CA264_04555at 1051.496 kb on + strand, within CA264_04555at 1051.531 kb on - strand, within CA264_04555at 1051.535 kb on + strand, within CA264_04555at 1051.591 kb on + strand, within CA264_04555at 1051.591 kb on + strand, within CA264_04555at 1051.592 kb on - strand, within CA264_04555at 1051.592 kb on - strand, within CA264_04555at 1051.617 kb on + strand, within CA264_04555at 1051.685 kb on + strand, within CA264_04555at 1051.686 kb on - strand, within CA264_04555at 1051.694 kb on - strand, within CA264_04555at 1051.694 kb on - strand, within CA264_04555at 1051.694 kb on - strand, within CA264_04555at 1051.694 kb on - strand, within CA264_04555at 1051.716 kb on - strand, within CA264_04555at 1051.735 kb on + strand, within CA264_04555at 1051.735 kb on + strand, within CA264_04555at 1051.870 kb on - strand, within CA264_04555at 1051.870 kb on - strand, within CA264_04555at 1051.871 kb on + strand, within CA264_04555at 1051.871 kb on + strand, within CA264_04555at 1051.871 kb on + strand, within CA264_04555at 1051.872 kb on - strand, within CA264_04555at 1051.872 kb on - strand, within CA264_04555at 1051.872 kb on - strand, within CA264_04555at 1051.872 kb on - strand, within CA264_04555at 1051.872 kb on - strand, within CA264_04555at 1051.902 kb on + strand, within CA264_04555at 1051.905 kb on - strand, within CA264_04555at 1051.905 kb on - strand, within CA264_04555at 1051.905 kb on - strand, within CA264_04555at 1051.969 kb on - strand, within CA264_04555at 1051.969 kb on - strand, within CA264_04555at 1051.992 kb on + strand, within CA264_04555at 1051.993 kb on - strand, within CA264_04555at 1052.073 kb on - strand, within CA264_04555at 1052.073 kb on - strand, within CA264_04555at 1052.111 kb on + strand, within CA264_04555at 1052.111 kb on + strand, within CA264_04555at 1052.111 kb on + strand, within CA264_04555at 1052.112 kb on - strand, within CA264_04555at 1052.112 kb on - strand, within CA264_04555at 1052.112 kb on - strand, within CA264_04555at 1052.112 kb on - strand, within CA264_04555at 1052.112 kb on - strand, within CA264_04555at 1052.112 kb on - strand, within CA264_04555at 1052.114 kb on + strand, within CA264_04555at 1052.115 kb on - strand, within CA264_04555at 1052.120 kb on + strand, within CA264_04555at 1052.120 kb on + strand, within CA264_04555at 1052.121 kb on - strand, within CA264_04555at 1052.121 kb on - strand, within CA264_04555at 1052.137 kb on - strand, within CA264_04555at 1052.154 kb on - strand, within CA264_04555at 1052.154 kb on - strand, within CA264_04555at 1052.173 kb on + strand, within CA264_04555at 1052.185 kb on + strand, within CA264_04555at 1052.185 kb on + strand, within CA264_04555at 1052.211 kb on - strand, within CA264_04555at 1052.377 kb on - strand, within CA264_04555at 1052.457 kb on - strand, within CA264_04555at 1052.469 kb on + strand, within CA264_04555at 1052.471 kb on + strand, within CA264_04555at 1052.471 kb on + strand, within CA264_04555at 1052.471 kb on + strand, within CA264_04555at 1052.471 kb on + strand, within CA264_04555at 1052.472 kb on - strand, within CA264_04555at 1052.472 kb on - strand, within CA264_04555at 1052.472 kb on - strand, within CA264_04555at 1052.594 kb on - strand, within CA264_04555at 1052.636 kb on + strand, within CA264_04555at 1052.637 kb on - strand, within CA264_04555at 1052.660 kb on + strand, within CA264_04555at 1052.678 kb on + strand, within CA264_04555at 1052.678 kb on + strand, within CA264_04555at 1052.678 kb on + strand, within CA264_04555at 1052.678 kb on + strand, within CA264_04555at 1052.679 kb on - strand, within CA264_04555at 1052.679 kb on - strand, within CA264_04555at 1052.679 kb on - strand, within CA264_04555at 1052.682 kb on + strand, within CA264_04555at 1052.743 kb on - strand, within CA264_04555at 1052.743 kb on - strand, within CA264_04555at 1052.744 kb on + strand, within CA264_04555at 1052.744 kb on + strand, within CA264_04555at 1052.744 kb on + strand, within CA264_04555at 1052.744 kb on + strand, within CA264_04555at 1052.744 kb on + strand, within CA264_04555at 1052.744 kb on + strand, within CA264_04555at 1052.744 kb on + strand, within CA264_04555at 1052.745 kb on - strand, within CA264_04555at 1052.745 kb on - strand, within CA264_04555at 1052.745 kb on - strand, within CA264_04555at 1052.748 kb on + strand, within CA264_04555at 1052.749 kb on - strand, within CA264_04555at 1052.749 kb on - strand, within CA264_04555at 1052.749 kb on - strand, within CA264_04555at 1052.753 kb on + strand, within CA264_04555at 1052.753 kb on + strand, within CA264_04555at 1052.754 kb on - strand, within CA264_04555at 1052.834 kb on - strand, within CA264_04555at 1052.841 kb on - strand, within CA264_04555at 1052.901 kb on + strand, within CA264_04555at 1052.901 kb on + strand, within CA264_04555at 1052.902 kb on - strand, within CA264_04555at 1052.903 kb on + strand, within CA264_04555at 1052.903 kb on + strand, within CA264_04555at 1052.904 kb on - strand, within CA264_04555at 1052.904 kb on - strand, within CA264_04555at 1052.999 kb on + strandat 1052.999 kb on + strandat 1053.030 kb on + strandat 1053.031 kb on - strandat 1053.031 kb on - strandat 1053.070 kb on + strandat 1053.139 kb on - strandat 1053.139 kb on - strandat 1053.165 kb on - strandat 1053.165 kb on - strandat 1053.201 kb on + strandat 1053.214 kb on + strandat 1053.230 kb on + strandat 1053.231 kb on - strandat 1053.280 kb on + strandat 1053.283 kb on - strandat 1053.291 kb on + strandat 1053.291 kb on + strandat 1053.301 kb on + strandat 1053.307 kb on + strandat 1053.376 kb on - strandat 1053.406 kb on - strandat 1053.481 kb on - strand, within CA264_04560at 1053.549 kb on + strand, within CA264_04560at 1053.549 kb on + strand, within CA264_04560at 1053.549 kb on + strand, within CA264_04560at 1053.550 kb on - strand, within CA264_04560at 1053.550 kb on - strand, within CA264_04560at 1053.582 kb on - strand, within CA264_04560at 1053.588 kb on + strand, within CA264_04560at 1053.644 kb on - strand, within CA264_04560at 1053.656 kb on + strand, within CA264_04560at 1053.656 kb on + strand, within CA264_04560at 1053.656 kb on + strand, within CA264_04560at 1053.657 kb on - strand, within CA264_04560at 1053.657 kb on - strand, within CA264_04560at 1053.657 kb on - strand, within CA264_04560at 1053.658 kb on + strand, within CA264_04560at 1053.658 kb on + strand, within CA264_04560at 1053.746 kb on + strand, within CA264_04560at 1053.934 kb on - strand, within CA264_04560at 1053.969 kb on + strand, within CA264_04560at 1053.970 kb on - strand, within CA264_04560at 1054.169 kb on + strand, within CA264_04560at 1054.169 kb on + strand, within CA264_04560at 1054.169 kb on + strand, within CA264_04560at 1054.169 kb on + strand, within CA264_04560

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,051,021 - CA264_04550 0.75 -0.1
1,051,095 + -0.1
1,051,095 + -0.5
1,051,095 + +1.4
1,051,104 + +0.6
1,051,122 + +0.6
1,051,159 + +0.2
1,051,159 + -0.6
1,051,160 - +1.0
1,051,167 + -0.2
1,051,167 + -0.1
1,051,169 + -0.1
1,051,169 + -0.8
1,051,197 + -0.4
1,051,210 + +0.7
1,051,296 + +1.3
1,051,383 + -0.2
1,051,384 - -0.0
1,051,418 + -0.3
1,051,452 + CA264_04555 0.11 +0.9
1,051,496 + CA264_04555 0.14 -1.0
1,051,531 - CA264_04555 0.15 +0.4
1,051,535 + CA264_04555 0.16 +0.1
1,051,591 + CA264_04555 0.18 -0.7
1,051,591 + CA264_04555 0.18 +0.0
1,051,592 - CA264_04555 0.18 -0.5
1,051,592 - CA264_04555 0.18 -0.4
1,051,617 + CA264_04555 0.20 -0.6
1,051,685 + CA264_04555 0.23 -0.3
1,051,686 - CA264_04555 0.23 +1.2
1,051,694 - CA264_04555 0.24 +0.6
1,051,694 - CA264_04555 0.24 -0.0
1,051,694 - CA264_04555 0.24 -0.2
1,051,694 - CA264_04555 0.24 -0.1
1,051,716 - CA264_04555 0.25 +0.1
1,051,735 + CA264_04555 0.26 +0.7
1,051,735 + CA264_04555 0.26 +0.4
1,051,870 - CA264_04555 0.33 -0.5
1,051,870 - CA264_04555 0.33 +0.5
1,051,871 + CA264_04555 0.33 -0.5
1,051,871 + CA264_04555 0.33 +1.0
1,051,871 + CA264_04555 0.33 +0.4
1,051,872 - CA264_04555 0.33 +0.7
1,051,872 - CA264_04555 0.33 -0.5
1,051,872 - CA264_04555 0.33 +0.1
1,051,872 - CA264_04555 0.33 -0.1
1,051,872 - CA264_04555 0.33 +0.1
1,051,902 + CA264_04555 0.34 -1.0
1,051,905 - CA264_04555 0.35 +0.2
1,051,905 - CA264_04555 0.35 -0.3
1,051,905 - CA264_04555 0.35 +0.2
1,051,969 - CA264_04555 0.38 +0.6
1,051,969 - CA264_04555 0.38 -0.4
1,051,992 + CA264_04555 0.39 +0.7
1,051,993 - CA264_04555 0.39 -0.1
1,052,073 - CA264_04555 0.43 +0.4
1,052,073 - CA264_04555 0.43 +0.2
1,052,111 + CA264_04555 0.45 -1.7
1,052,111 + CA264_04555 0.45 -0.2
1,052,111 + CA264_04555 0.45 -0.5
1,052,112 - CA264_04555 0.45 -0.3
1,052,112 - CA264_04555 0.45 +0.1
1,052,112 - CA264_04555 0.45 +0.5
1,052,112 - CA264_04555 0.45 -0.5
1,052,112 - CA264_04555 0.45 +0.1
1,052,112 - CA264_04555 0.45 +0.3
1,052,114 + CA264_04555 0.45 -0.1
1,052,115 - CA264_04555 0.45 -0.6
1,052,120 + CA264_04555 0.46 +0.3
1,052,120 + CA264_04555 0.46 +0.5
1,052,121 - CA264_04555 0.46 +0.1
1,052,121 - CA264_04555 0.46 +0.2
1,052,137 - CA264_04555 0.47 +1.8
1,052,154 - CA264_04555 0.47 -0.6
1,052,154 - CA264_04555 0.47 -1.1
1,052,173 + CA264_04555 0.48 -0.8
1,052,185 + CA264_04555 0.49 +0.4
1,052,185 + CA264_04555 0.49 -0.9
1,052,211 - CA264_04555 0.50 +0.2
1,052,377 - CA264_04555 0.59 +0.6
1,052,457 - CA264_04555 0.63 +0.8
1,052,469 + CA264_04555 0.64 -0.2
1,052,471 + CA264_04555 0.64 -0.3
1,052,471 + CA264_04555 0.64 -0.4
1,052,471 + CA264_04555 0.64 -0.6
1,052,471 + CA264_04555 0.64 +0.1
1,052,472 - CA264_04555 0.64 -0.5
1,052,472 - CA264_04555 0.64 -0.3
1,052,472 - CA264_04555 0.64 +1.2
1,052,594 - CA264_04555 0.70 -0.4
1,052,636 + CA264_04555 0.72 +0.6
1,052,637 - CA264_04555 0.72 -0.6
1,052,660 + CA264_04555 0.74 -0.6
1,052,678 + CA264_04555 0.75 -1.5
1,052,678 + CA264_04555 0.75 +0.1
1,052,678 + CA264_04555 0.75 +0.0
1,052,678 + CA264_04555 0.75 +1.2
1,052,679 - CA264_04555 0.75 -0.5
1,052,679 - CA264_04555 0.75 +0.9
1,052,679 - CA264_04555 0.75 -1.7
1,052,682 + CA264_04555 0.75 +0.4
1,052,743 - CA264_04555 0.78 -0.4
1,052,743 - CA264_04555 0.78 -0.0
1,052,744 + CA264_04555 0.78 +0.7
1,052,744 + CA264_04555 0.78 -1.6
1,052,744 + CA264_04555 0.78 -0.5
1,052,744 + CA264_04555 0.78 +0.2
1,052,744 + CA264_04555 0.78 -0.5
1,052,744 + CA264_04555 0.78 -0.2
1,052,744 + CA264_04555 0.78 -0.3
1,052,745 - CA264_04555 0.78 -0.1
1,052,745 - CA264_04555 0.78 +0.3
1,052,745 - CA264_04555 0.78 +0.6
1,052,748 + CA264_04555 0.78 +0.2
1,052,749 - CA264_04555 0.78 +0.8
1,052,749 - CA264_04555 0.78 +0.4
1,052,749 - CA264_04555 0.78 +0.2
1,052,753 + CA264_04555 0.78 -0.4
1,052,753 + CA264_04555 0.78 +1.2
1,052,754 - CA264_04555 0.78 -0.3
1,052,834 - CA264_04555 0.83 -0.2
1,052,841 - CA264_04555 0.83 -0.4
1,052,901 + CA264_04555 0.86 +0.3
1,052,901 + CA264_04555 0.86 -0.9
1,052,902 - CA264_04555 0.86 +0.1
1,052,903 + CA264_04555 0.86 +0.4
1,052,903 + CA264_04555 0.86 -0.3
1,052,904 - CA264_04555 0.86 -0.4
1,052,904 - CA264_04555 0.86 -0.9
1,052,999 + +0.0
1,052,999 + -0.7
1,053,030 + -0.8
1,053,031 - +0.1
1,053,031 - +0.6
1,053,070 + -1.5
1,053,139 - -0.1
1,053,139 - +0.3
1,053,165 - +0.1
1,053,165 - +0.1
1,053,201 + +0.6
1,053,214 + -0.2
1,053,230 + +0.7
1,053,231 - +0.1
1,053,280 + +0.0
1,053,283 - -1.0
1,053,291 + +1.1
1,053,291 + +0.2
1,053,301 + -0.1
1,053,307 + -0.6
1,053,376 - +1.0
1,053,406 - -0.7
1,053,481 - CA264_04560 0.12 +0.7
1,053,549 + CA264_04560 0.16 +0.3
1,053,549 + CA264_04560 0.16 +0.1
1,053,549 + CA264_04560 0.16 -0.3
1,053,550 - CA264_04560 0.16 -2.7
1,053,550 - CA264_04560 0.16 -0.8
1,053,582 - CA264_04560 0.19 -0.1
1,053,588 + CA264_04560 0.19 -0.2
1,053,644 - CA264_04560 0.23 -0.3
1,053,656 + CA264_04560 0.23 +0.1
1,053,656 + CA264_04560 0.23 -0.2
1,053,656 + CA264_04560 0.23 -1.1
1,053,657 - CA264_04560 0.24 +0.2
1,053,657 - CA264_04560 0.24 +0.2
1,053,657 - CA264_04560 0.24 -1.1
1,053,658 + CA264_04560 0.24 -0.2
1,053,658 + CA264_04560 0.24 -1.1
1,053,746 + CA264_04560 0.30 +1.1
1,053,934 - CA264_04560 0.42 -1.8
1,053,969 + CA264_04560 0.44 +0.1
1,053,970 - CA264_04560 0.45 +0.1
1,054,169 + CA264_04560 0.58 -0.1
1,054,169 + CA264_04560 0.58 -1.3
1,054,169 + CA264_04560 0.58 -0.1
1,054,169 + CA264_04560 0.58 +0.1

Or see this region's nucleotide sequence