Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04300 and CA264_04305 are separated by 513 nucleotides CA264_04305 and CA264_04310 are separated by 731 nucleotides
CA264_04300: CA264_04300 - ABC transporter substrate-binding protein, at 992,139 to 993,863
_04300
CA264_04305: CA264_04305 - hypothetical protein, at 994,377 to 995,858
_04305
CA264_04310: CA264_04310 - hypothetical protein, at 996,590 to 997,402
_04310
Position (kb) 994
995
996 Strain fitness (log2 ratio) -2
-1
0
1
2 at 993.491 kb on + strand, within CA264_04300 at 993.496 kb on - strand, within CA264_04300 at 993.524 kb on + strand, within CA264_04300 at 993.525 kb on - strand, within CA264_04300 at 993.590 kb on - strand, within CA264_04300 at 993.593 kb on + strand, within CA264_04300 at 993.594 kb on - strand, within CA264_04300 at 993.705 kb on - strand at 993.740 kb on + strand at 993.741 kb on - strand at 993.780 kb on + strand at 993.829 kb on - strand at 993.846 kb on + strand at 993.865 kb on + strand at 993.865 kb on + strand at 993.866 kb on - strand at 993.866 kb on - strand at 993.869 kb on + strand at 993.870 kb on - strand at 993.934 kb on + strand at 993.991 kb on + strand at 993.992 kb on - strand at 994.029 kb on - strand at 994.076 kb on - strand at 994.081 kb on - strand at 994.081 kb on - strand at 994.116 kb on + strand at 994.132 kb on + strand at 994.266 kb on + strand at 994.277 kb on - strand at 994.345 kb on - strand at 994.373 kb on + strand at 994.405 kb on + strand at 994.405 kb on + strand at 994.409 kb on + strand at 994.409 kb on + strand at 994.409 kb on + strand at 994.417 kb on + strand at 994.417 kb on + strand at 994.417 kb on + strand at 994.418 kb on - strand at 994.500 kb on + strand at 994.512 kb on + strand at 994.513 kb on - strand at 994.513 kb on - strand at 994.516 kb on + strand at 994.516 kb on + strand at 994.533 kb on + strand, within CA264_04305 at 994.539 kb on - strand, within CA264_04305 at 994.571 kb on - strand, within CA264_04305 at 994.601 kb on + strand, within CA264_04305 at 994.606 kb on + strand, within CA264_04305 at 994.630 kb on - strand, within CA264_04305 at 994.705 kb on + strand, within CA264_04305 at 994.729 kb on - strand, within CA264_04305 at 994.733 kb on - strand, within CA264_04305 at 994.753 kb on + strand, within CA264_04305 at 994.757 kb on + strand, within CA264_04305 at 994.776 kb on - strand, within CA264_04305 at 994.801 kb on + strand, within CA264_04305 at 994.807 kb on + strand, within CA264_04305 at 994.808 kb on - strand, within CA264_04305 at 994.830 kb on - strand, within CA264_04305 at 994.833 kb on + strand, within CA264_04305 at 994.836 kb on - strand, within CA264_04305 at 994.865 kb on - strand, within CA264_04305 at 994.969 kb on + strand, within CA264_04305 at 995.002 kb on - strand, within CA264_04305 at 995.039 kb on + strand, within CA264_04305 at 995.039 kb on + strand, within CA264_04305 at 995.040 kb on - strand, within CA264_04305 at 995.046 kb on + strand, within CA264_04305 at 995.049 kb on + strand, within CA264_04305 at 995.049 kb on + strand, within CA264_04305 at 995.049 kb on + strand, within CA264_04305 at 995.050 kb on - strand, within CA264_04305 at 995.052 kb on - strand, within CA264_04305 at 995.052 kb on - strand, within CA264_04305 at 995.052 kb on - strand, within CA264_04305 at 995.068 kb on - strand, within CA264_04305 at 995.068 kb on - strand, within CA264_04305 at 995.107 kb on + strand, within CA264_04305 at 995.107 kb on + strand, within CA264_04305 at 995.107 kb on + strand, within CA264_04305 at 995.114 kb on - strand, within CA264_04305 at 995.147 kb on - strand, within CA264_04305 at 995.150 kb on + strand, within CA264_04305 at 995.157 kb on - strand, within CA264_04305 at 995.175 kb on - strand, within CA264_04305 at 995.177 kb on + strand, within CA264_04305 at 995.178 kb on - strand, within CA264_04305 at 995.190 kb on - strand, within CA264_04305 at 995.222 kb on + strand, within CA264_04305 at 995.236 kb on - strand, within CA264_04305 at 995.236 kb on - strand, within CA264_04305 at 995.252 kb on - strand, within CA264_04305 at 995.289 kb on + strand, within CA264_04305 at 995.290 kb on - strand, within CA264_04305 at 995.311 kb on + strand, within CA264_04305 at 995.312 kb on - strand, within CA264_04305 at 995.312 kb on - strand, within CA264_04305 at 995.317 kb on + strand, within CA264_04305 at 995.318 kb on - strand, within CA264_04305 at 995.370 kb on - strand, within CA264_04305 at 995.376 kb on - strand, within CA264_04305 at 995.376 kb on - strand, within CA264_04305 at 995.390 kb on - strand, within CA264_04305 at 995.419 kb on + strand, within CA264_04305 at 995.420 kb on - strand, within CA264_04305 at 995.420 kb on - strand, within CA264_04305 at 995.421 kb on + strand, within CA264_04305 at 995.421 kb on + strand, within CA264_04305 at 995.422 kb on + strand, within CA264_04305 at 995.431 kb on - strand, within CA264_04305 at 995.489 kb on - strand, within CA264_04305 at 995.491 kb on + strand, within CA264_04305 at 995.493 kb on + strand, within CA264_04305 at 995.493 kb on + strand, within CA264_04305 at 995.494 kb on - strand, within CA264_04305 at 995.505 kb on + strand, within CA264_04305 at 995.507 kb on + strand, within CA264_04305 at 995.510 kb on + strand, within CA264_04305 at 995.510 kb on + strand, within CA264_04305 at 995.511 kb on - strand, within CA264_04305 at 995.517 kb on - strand, within CA264_04305 at 995.534 kb on - strand, within CA264_04305 at 995.534 kb on - strand, within CA264_04305 at 995.621 kb on + strand, within CA264_04305 at 995.621 kb on + strand, within CA264_04305 at 995.621 kb on + strand, within CA264_04305 at 995.622 kb on - strand, within CA264_04305 at 995.628 kb on - strand, within CA264_04305 at 995.660 kb on + strand, within CA264_04305 at 995.687 kb on + strand, within CA264_04305 at 995.693 kb on - strand, within CA264_04305 at 995.791 kb on + strand at 995.806 kb on - strand at 995.826 kb on - strand at 995.850 kb on + strand at 995.856 kb on + strand at 995.869 kb on + strand at 995.872 kb on + strand at 995.872 kb on + strand at 995.872 kb on + strand at 995.873 kb on - strand at 995.894 kb on + strand at 995.895 kb on - strand at 995.897 kb on + strand at 995.904 kb on + strand at 995.904 kb on + strand at 995.905 kb on - strand at 995.906 kb on + strand at 995.907 kb on - strand at 995.913 kb on + strand at 995.913 kb on + strand at 995.914 kb on - strand at 995.914 kb on - strand at 995.923 kb on - strand at 995.928 kb on + strand at 995.958 kb on - strand at 995.958 kb on - strand at 995.958 kb on - strand at 996.032 kb on + strand at 996.032 kb on + strand at 996.032 kb on + strand at 996.034 kb on + strand at 996.034 kb on + strand at 996.038 kb on - strand at 996.097 kb on + strand at 996.100 kb on + strand at 996.100 kb on + strand at 996.101 kb on - strand at 996.101 kb on - strand at 996.101 kb on - strand at 996.101 kb on - strand at 996.112 kb on + strand at 996.127 kb on - strand at 996.153 kb on - strand at 996.153 kb on - strand at 996.172 kb on - strand at 996.218 kb on - strand at 996.262 kb on - strand at 996.269 kb on + strand at 996.296 kb on + strand at 996.296 kb on + strand at 996.297 kb on - strand at 996.300 kb on + strand at 996.303 kb on + strand at 996.303 kb on + strand at 996.310 kb on - strand at 996.382 kb on - strand at 996.398 kb on + strand at 996.431 kb on + strand at 996.434 kb on + strand at 996.434 kb on + strand at 996.435 kb on - strand at 996.469 kb on - strand at 996.521 kb on - strand at 996.525 kb on + strand at 996.525 kb on + strand at 996.526 kb on - strand at 996.526 kb on - strand at 996.534 kb on + strand at 996.539 kb on - strand at 996.555 kb on + strand at 996.588 kb on + strand at 996.588 kb on + strand at 996.593 kb on + strand at 996.594 kb on - strand at 996.599 kb on + strand at 996.599 kb on + strand at 996.599 kb on + strand at 996.600 kb on - strand at 996.600 kb on - strand at 996.600 kb on - strand at 996.603 kb on + strand at 996.604 kb on - strand at 996.622 kb on - strand at 996.622 kb on - strand at 996.623 kb on + strand at 996.623 kb on + strand at 996.624 kb on - strand at 996.624 kb on - strand at 996.644 kb on + strand at 996.644 kb on + strand at 996.645 kb on - strand at 996.645 kb on - strand at 996.645 kb on - strand at 996.645 kb on - strand at 996.655 kb on - strand at 996.666 kb on + strand at 996.666 kb on + strand at 996.728 kb on + strand, within CA264_04310 at 996.728 kb on + strand, within CA264_04310 at 996.728 kb on + strand, within CA264_04310 at 996.729 kb on - strand, within CA264_04310 at 996.730 kb on + strand, within CA264_04310 at 996.737 kb on + strand, within CA264_04310 at 996.737 kb on + strand, within CA264_04310 at 996.737 kb on + strand, within CA264_04310 at 996.738 kb on - strand, within CA264_04310 at 996.738 kb on - strand, within CA264_04310 at 996.830 kb on + strand, within CA264_04310 at 996.830 kb on + strand, within CA264_04310 at 996.831 kb on - strand, within CA264_04310 at 996.857 kb on + strand, within CA264_04310 at 996.857 kb on + strand, within CA264_04310
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 993,491 + CA264_04300 0.78 +0.5 993,496 - CA264_04300 0.79 +1.3 993,524 + CA264_04300 0.80 -0.0 993,525 - CA264_04300 0.80 +0.2 993,590 - CA264_04300 0.84 +0.6 993,593 + CA264_04300 0.84 -0.0 993,594 - CA264_04300 0.84 -0.7 993,705 - +1.0 993,740 + +0.3 993,741 - -0.5 993,780 + -0.9 993,829 - +0.0 993,846 + +1.3 993,865 + +0.4 993,865 + -1.0 993,866 - -0.1 993,866 - -0.0 993,869 + +1.0 993,870 - -2.0 993,934 + -0.5 993,991 + -0.2 993,992 - -0.5 994,029 - +1.0 994,076 - -0.2 994,081 - -0.5 994,081 - +0.9 994,116 + -0.7 994,132 + +0.3 994,266 + -0.7 994,277 - +0.2 994,345 - -0.4 994,373 + -0.7 994,405 + +0.5 994,405 + +0.5 994,409 + +0.4 994,409 + -0.3 994,409 + +0.3 994,417 + -0.0 994,417 + +0.3 994,417 + +0.5 994,418 - -1.0 994,500 + +0.0 994,512 + +0.4 994,513 - +0.4 994,513 - -0.2 994,516 + +0.4 994,516 + +0.1 994,533 + CA264_04305 0.11 +0.4 994,539 - CA264_04305 0.11 -0.4 994,571 - CA264_04305 0.13 +0.1 994,601 + CA264_04305 0.15 -0.3 994,606 + CA264_04305 0.15 -0.2 994,630 - CA264_04305 0.17 +0.2 994,705 + CA264_04305 0.22 +0.4 994,729 - CA264_04305 0.24 +0.2 994,733 - CA264_04305 0.24 -0.1 994,753 + CA264_04305 0.25 +0.1 994,757 + CA264_04305 0.26 +0.2 994,776 - CA264_04305 0.27 -0.2 994,801 + CA264_04305 0.29 +0.8 994,807 + CA264_04305 0.29 -1.7 994,808 - CA264_04305 0.29 -0.1 994,830 - CA264_04305 0.31 +0.4 994,833 + CA264_04305 0.31 +0.2 994,836 - CA264_04305 0.31 +2.3 994,865 - CA264_04305 0.33 -0.2 994,969 + CA264_04305 0.40 +1.3 995,002 - CA264_04305 0.42 +1.9 995,039 + CA264_04305 0.45 -0.0 995,039 + CA264_04305 0.45 -0.2 995,040 - CA264_04305 0.45 +0.1 995,046 + CA264_04305 0.45 +0.7 995,049 + CA264_04305 0.45 +0.1 995,049 + CA264_04305 0.45 -0.2 995,049 + CA264_04305 0.45 -0.9 995,050 - CA264_04305 0.45 +0.4 995,052 - CA264_04305 0.46 +0.1 995,052 - CA264_04305 0.46 +0.1 995,052 - CA264_04305 0.46 +0.2 995,068 - CA264_04305 0.47 -0.1 995,068 - CA264_04305 0.47 +0.5 995,107 + CA264_04305 0.49 -0.4 995,107 + CA264_04305 0.49 +0.5 995,107 + CA264_04305 0.49 +0.3 995,114 - CA264_04305 0.50 +1.0 995,147 - CA264_04305 0.52 +0.3 995,150 + CA264_04305 0.52 -1.4 995,157 - CA264_04305 0.53 -0.7 995,175 - CA264_04305 0.54 +0.0 995,177 + CA264_04305 0.54 -0.6 995,178 - CA264_04305 0.54 +0.1 995,190 - CA264_04305 0.55 +0.0 995,222 + CA264_04305 0.57 -0.1 995,236 - CA264_04305 0.58 -0.0 995,236 - CA264_04305 0.58 +0.0 995,252 - CA264_04305 0.59 +0.1 995,289 + CA264_04305 0.62 +0.1 995,290 - CA264_04305 0.62 +0.3 995,311 + CA264_04305 0.63 +1.1 995,312 - CA264_04305 0.63 -0.6 995,312 - CA264_04305 0.63 -0.9 995,317 + CA264_04305 0.63 -0.1 995,318 - CA264_04305 0.63 +1.2 995,370 - CA264_04305 0.67 -0.5 995,376 - CA264_04305 0.67 +0.2 995,376 - CA264_04305 0.67 -2.1 995,390 - CA264_04305 0.68 -0.2 995,419 + CA264_04305 0.70 +0.2 995,420 - CA264_04305 0.70 -0.1 995,420 - CA264_04305 0.70 +0.5 995,421 + CA264_04305 0.70 -0.1 995,421 + CA264_04305 0.70 +1.0 995,422 + CA264_04305 0.71 +0.6 995,431 - CA264_04305 0.71 +1.0 995,489 - CA264_04305 0.75 +0.5 995,491 + CA264_04305 0.75 +1.1 995,493 + CA264_04305 0.75 +0.4 995,493 + CA264_04305 0.75 +0.1 995,494 - CA264_04305 0.75 -0.7 995,505 + CA264_04305 0.76 +0.5 995,507 + CA264_04305 0.76 +0.1 995,510 + CA264_04305 0.76 +0.7 995,510 + CA264_04305 0.76 +0.1 995,511 - CA264_04305 0.77 +0.0 995,517 - CA264_04305 0.77 +0.1 995,534 - CA264_04305 0.78 +0.5 995,534 - CA264_04305 0.78 +0.0 995,621 + CA264_04305 0.84 -0.2 995,621 + CA264_04305 0.84 +0.1 995,621 + CA264_04305 0.84 +0.1 995,622 - CA264_04305 0.84 -0.1 995,628 - CA264_04305 0.84 -0.3 995,660 + CA264_04305 0.87 +1.7 995,687 + CA264_04305 0.88 +0.4 995,693 - CA264_04305 0.89 +0.0 995,791 + +0.1 995,806 - +0.2 995,826 - +0.2 995,850 + +0.1 995,856 + -0.1 995,869 + +0.8 995,872 + -0.2 995,872 + -0.7 995,872 + -0.3 995,873 - +0.7 995,894 + -0.3 995,895 - -0.6 995,897 + -0.5 995,904 + -0.1 995,904 + -1.1 995,905 - +0.3 995,906 + -0.3 995,907 - +0.0 995,913 + +0.4 995,913 + -0.3 995,914 - -1.4 995,914 - -0.1 995,923 - +0.1 995,928 + -0.2 995,958 - +0.1 995,958 - +0.6 995,958 - +0.1 996,032 + +1.0 996,032 + -2.1 996,032 + +0.6 996,034 + -0.1 996,034 + -0.7 996,038 - +0.8 996,097 + +0.6 996,100 + +0.5 996,100 + -0.2 996,101 - -0.1 996,101 - -0.6 996,101 - +0.1 996,101 - -0.3 996,112 + -1.0 996,127 - -0.3 996,153 - +0.1 996,153 - +0.1 996,172 - -0.4 996,218 - +0.5 996,262 - +1.3 996,269 + -2.3 996,296 + +0.3 996,296 + +0.6 996,297 - -0.1 996,300 + +0.4 996,303 + +0.2 996,303 + +0.1 996,310 - +0.6 996,382 - +0.3 996,398 + +1.0 996,431 + +1.3 996,434 + +0.5 996,434 + -0.0 996,435 - -0.1 996,469 - +0.2 996,521 - -0.2 996,525 + +0.1 996,525 + -0.6 996,526 - -0.2 996,526 - +0.3 996,534 + -0.0 996,539 - +1.3 996,555 + -2.3 996,588 + +0.0 996,588 + -0.6 996,593 + -0.3 996,594 - -0.1 996,599 + -0.1 996,599 + +1.7 996,599 + +0.2 996,600 - -0.3 996,600 - -0.2 996,600 - -0.9 996,603 + -0.2 996,604 - -0.4 996,622 - -0.8 996,622 - +1.7 996,623 + -0.6 996,623 + -0.2 996,624 - -0.3 996,624 - -0.5 996,644 + +0.6 996,644 + -1.4 996,645 - -0.9 996,645 - -0.3 996,645 - +1.4 996,645 - -0.1 996,655 - -0.1 996,666 + -0.3 996,666 + +0.4 996,728 + CA264_04310 0.17 -0.8 996,728 + CA264_04310 0.17 +1.3 996,728 + CA264_04310 0.17 +0.4 996,729 - CA264_04310 0.17 -0.7 996,730 + CA264_04310 0.17 -0.5 996,737 + CA264_04310 0.18 +0.7 996,737 + CA264_04310 0.18 -0.2 996,737 + CA264_04310 0.18 +0.1 996,738 - CA264_04310 0.18 +1.2 996,738 - CA264_04310 0.18 +0.6 996,830 + CA264_04310 0.30 +0.3 996,830 + CA264_04310 0.30 +0.6 996,831 - CA264_04310 0.30 -0.2 996,857 + CA264_04310 0.33 +0.7 996,857 + CA264_04310 0.33 -0.6
Or see this region's nucleotide sequence