Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04300

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04295 and CA264_04300 are separated by 12 nucleotidesCA264_04300 and CA264_04305 are separated by 513 nucleotides CA264_04295: CA264_04295 - hypothetical protein, at 990,738 to 992,126 _04295 CA264_04300: CA264_04300 - ABC transporter substrate-binding protein, at 992,139 to 993,863 _04300 CA264_04305: CA264_04305 - hypothetical protein, at 994,377 to 995,858 _04305 Position (kb) 992 993 994Strain fitness (log2 ratio) -2 -1 0 1 2at 991.204 kb on + strand, within CA264_04295at 991.362 kb on + strand, within CA264_04295at 991.363 kb on - strand, within CA264_04295at 991.367 kb on + strand, within CA264_04295at 991.523 kb on - strand, within CA264_04295at 991.570 kb on + strand, within CA264_04295at 991.591 kb on - strand, within CA264_04295at 991.591 kb on - strand, within CA264_04295at 991.638 kb on - strand, within CA264_04295at 991.667 kb on + strand, within CA264_04295at 991.703 kb on - strand, within CA264_04295at 991.710 kb on + strand, within CA264_04295at 991.943 kb on - strand, within CA264_04295at 991.951 kb on + strand, within CA264_04295at 991.951 kb on + strand, within CA264_04295at 991.988 kb on - strandat 992.010 kb on + strandat 992.010 kb on + strandat 992.053 kb on - strandat 992.097 kb on + strandat 992.098 kb on - strandat 992.101 kb on - strandat 992.101 kb on - strandat 992.116 kb on + strandat 992.116 kb on + strandat 992.117 kb on - strandat 992.117 kb on - strandat 992.117 kb on - strandat 992.140 kb on + strandat 992.140 kb on + strandat 992.141 kb on - strandat 992.152 kb on - strandat 992.173 kb on + strandat 992.272 kb on + strandat 992.272 kb on + strandat 992.272 kb on + strandat 992.276 kb on + strandat 992.276 kb on + strandat 992.276 kb on + strandat 992.324 kb on + strand, within CA264_04300at 992.337 kb on + strand, within CA264_04300at 992.397 kb on + strand, within CA264_04300at 992.407 kb on + strand, within CA264_04300at 992.573 kb on + strand, within CA264_04300at 992.731 kb on + strand, within CA264_04300at 992.732 kb on - strand, within CA264_04300at 992.912 kb on + strand, within CA264_04300at 993.000 kb on - strand, within CA264_04300at 993.110 kb on + strand, within CA264_04300at 993.111 kb on - strand, within CA264_04300at 993.116 kb on + strand, within CA264_04300at 993.120 kb on - strand, within CA264_04300at 993.187 kb on + strand, within CA264_04300at 993.343 kb on + strand, within CA264_04300at 993.491 kb on + strand, within CA264_04300at 993.496 kb on - strand, within CA264_04300at 993.524 kb on + strand, within CA264_04300at 993.525 kb on - strand, within CA264_04300at 993.590 kb on - strand, within CA264_04300at 993.593 kb on + strand, within CA264_04300at 993.594 kb on - strand, within CA264_04300at 993.705 kb on - strandat 993.740 kb on + strandat 993.741 kb on - strandat 993.780 kb on + strandat 993.829 kb on - strandat 993.846 kb on + strandat 993.865 kb on + strandat 993.865 kb on + strandat 993.866 kb on - strandat 993.866 kb on - strandat 993.869 kb on + strandat 993.870 kb on - strandat 993.934 kb on + strandat 993.991 kb on + strandat 993.992 kb on - strandat 994.029 kb on - strandat 994.076 kb on - strandat 994.081 kb on - strandat 994.081 kb on - strandat 994.116 kb on + strandat 994.132 kb on + strandat 994.266 kb on + strandat 994.277 kb on - strandat 994.345 kb on - strandat 994.373 kb on + strandat 994.405 kb on + strandat 994.405 kb on + strandat 994.409 kb on + strandat 994.409 kb on + strandat 994.409 kb on + strandat 994.417 kb on + strandat 994.417 kb on + strandat 994.417 kb on + strandat 994.418 kb on - strandat 994.500 kb on + strandat 994.512 kb on + strandat 994.513 kb on - strandat 994.513 kb on - strandat 994.516 kb on + strandat 994.516 kb on + strandat 994.533 kb on + strand, within CA264_04305at 994.539 kb on - strand, within CA264_04305at 994.571 kb on - strand, within CA264_04305at 994.601 kb on + strand, within CA264_04305at 994.606 kb on + strand, within CA264_04305at 994.630 kb on - strand, within CA264_04305at 994.705 kb on + strand, within CA264_04305at 994.729 kb on - strand, within CA264_04305at 994.733 kb on - strand, within CA264_04305at 994.753 kb on + strand, within CA264_04305at 994.757 kb on + strand, within CA264_04305at 994.776 kb on - strand, within CA264_04305at 994.801 kb on + strand, within CA264_04305at 994.807 kb on + strand, within CA264_04305at 994.808 kb on - strand, within CA264_04305at 994.830 kb on - strand, within CA264_04305at 994.833 kb on + strand, within CA264_04305at 994.836 kb on - strand, within CA264_04305

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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991,204 + CA264_04295 0.34 -0.9
991,362 + CA264_04295 0.45 +1.2
991,363 - CA264_04295 0.45 +0.5
991,367 + CA264_04295 0.45 +0.1
991,523 - CA264_04295 0.57 +0.2
991,570 + CA264_04295 0.60 +0.9
991,591 - CA264_04295 0.61 +0.2
991,591 - CA264_04295 0.61 +0.1
991,638 - CA264_04295 0.65 +0.5
991,667 + CA264_04295 0.67 +0.2
991,703 - CA264_04295 0.69 +0.8
991,710 + CA264_04295 0.70 -0.6
991,943 - CA264_04295 0.87 -1.6
991,951 + CA264_04295 0.87 +0.1
991,951 + CA264_04295 0.87 +0.4
991,988 - +0.2
992,010 + +0.3
992,010 + +0.3
992,053 - +0.5
992,097 + +1.1
992,098 - +1.4
992,101 - -0.1
992,101 - +1.3
992,116 + +0.4
992,116 + -0.0
992,117 - -0.2
992,117 - +0.3
992,117 - +1.9
992,140 + -0.7
992,140 + +0.1
992,141 - +1.8
992,152 - -0.7
992,173 + +0.1
992,272 + +0.6
992,272 + +0.1
992,272 + +0.4
992,276 + +0.3
992,276 + +0.8
992,276 + -0.1
992,324 + CA264_04300 0.11 +0.4
992,337 + CA264_04300 0.11 +0.7
992,397 + CA264_04300 0.15 -0.0
992,407 + CA264_04300 0.16 +0.9
992,573 + CA264_04300 0.25 -1.4
992,731 + CA264_04300 0.34 +0.4
992,732 - CA264_04300 0.34 +0.3
992,912 + CA264_04300 0.45 +0.4
993,000 - CA264_04300 0.50 -0.3
993,110 + CA264_04300 0.56 -0.2
993,111 - CA264_04300 0.56 +0.2
993,116 + CA264_04300 0.57 +0.2
993,120 - CA264_04300 0.57 -0.3
993,187 + CA264_04300 0.61 +0.1
993,343 + CA264_04300 0.70 +0.2
993,491 + CA264_04300 0.78 +0.5
993,496 - CA264_04300 0.79 +1.3
993,524 + CA264_04300 0.80 -0.0
993,525 - CA264_04300 0.80 +0.2
993,590 - CA264_04300 0.84 +0.6
993,593 + CA264_04300 0.84 -0.0
993,594 - CA264_04300 0.84 -0.7
993,705 - +1.0
993,740 + +0.3
993,741 - -0.5
993,780 + -0.9
993,829 - +0.0
993,846 + +1.3
993,865 + +0.4
993,865 + -1.0
993,866 - -0.1
993,866 - -0.0
993,869 + +1.0
993,870 - -2.0
993,934 + -0.5
993,991 + -0.2
993,992 - -0.5
994,029 - +1.0
994,076 - -0.2
994,081 - -0.5
994,081 - +0.9
994,116 + -0.7
994,132 + +0.3
994,266 + -0.7
994,277 - +0.2
994,345 - -0.4
994,373 + -0.7
994,405 + +0.5
994,405 + +0.5
994,409 + +0.4
994,409 + -0.3
994,409 + +0.3
994,417 + -0.0
994,417 + +0.3
994,417 + +0.5
994,418 - -1.0
994,500 + +0.0
994,512 + +0.4
994,513 - +0.4
994,513 - -0.2
994,516 + +0.4
994,516 + +0.1
994,533 + CA264_04305 0.11 +0.4
994,539 - CA264_04305 0.11 -0.4
994,571 - CA264_04305 0.13 +0.1
994,601 + CA264_04305 0.15 -0.3
994,606 + CA264_04305 0.15 -0.2
994,630 - CA264_04305 0.17 +0.2
994,705 + CA264_04305 0.22 +0.4
994,729 - CA264_04305 0.24 +0.2
994,733 - CA264_04305 0.24 -0.1
994,753 + CA264_04305 0.25 +0.1
994,757 + CA264_04305 0.26 +0.2
994,776 - CA264_04305 0.27 -0.2
994,801 + CA264_04305 0.29 +0.8
994,807 + CA264_04305 0.29 -1.7
994,808 - CA264_04305 0.29 -0.1
994,830 - CA264_04305 0.31 +0.4
994,833 + CA264_04305 0.31 +0.2
994,836 - CA264_04305 0.31 +2.3

Or see this region's nucleotide sequence