Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04295

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04290 and CA264_04295 overlap by 4 nucleotidesCA264_04295 and CA264_04300 are separated by 12 nucleotides CA264_04290: CA264_04290 - ABC transporter permease, at 989,656 to 990,741 _04290 CA264_04295: CA264_04295 - hypothetical protein, at 990,738 to 992,126 _04295 CA264_04300: CA264_04300 - ABC transporter substrate-binding protein, at 992,139 to 993,863 _04300 Position (kb) 990 991 992 993Strain fitness (log2 ratio) -1 0 1 2at 989.809 kb on - strand, within CA264_04290at 989.821 kb on - strand, within CA264_04290at 989.835 kb on + strand, within CA264_04290at 989.886 kb on + strand, within CA264_04290at 989.886 kb on + strand, within CA264_04290at 990.127 kb on - strand, within CA264_04290at 990.283 kb on + strand, within CA264_04290at 990.308 kb on + strand, within CA264_04290at 990.309 kb on - strand, within CA264_04290at 990.320 kb on + strand, within CA264_04290at 990.329 kb on + strand, within CA264_04290at 990.330 kb on - strand, within CA264_04290at 990.405 kb on - strand, within CA264_04290at 990.439 kb on + strand, within CA264_04290at 990.439 kb on + strand, within CA264_04290at 990.730 kb on + strandat 990.757 kb on - strandat 990.757 kb on - strandat 990.779 kb on - strandat 990.814 kb on - strandat 990.814 kb on - strandat 990.829 kb on - strandat 990.968 kb on + strand, within CA264_04295at 990.968 kb on + strand, within CA264_04295at 991.053 kb on - strand, within CA264_04295at 991.055 kb on - strand, within CA264_04295at 991.055 kb on - strand, within CA264_04295at 991.065 kb on + strand, within CA264_04295at 991.105 kb on + strand, within CA264_04295at 991.106 kb on - strand, within CA264_04295at 991.106 kb on - strand, within CA264_04295at 991.110 kb on + strand, within CA264_04295at 991.111 kb on - strand, within CA264_04295at 991.111 kb on - strand, within CA264_04295at 991.111 kb on - strand, within CA264_04295at 991.131 kb on - strand, within CA264_04295at 991.133 kb on + strand, within CA264_04295at 991.134 kb on - strand, within CA264_04295at 991.134 kb on - strand, within CA264_04295at 991.204 kb on + strand, within CA264_04295at 991.362 kb on + strand, within CA264_04295at 991.363 kb on - strand, within CA264_04295at 991.367 kb on + strand, within CA264_04295at 991.523 kb on - strand, within CA264_04295at 991.570 kb on + strand, within CA264_04295at 991.591 kb on - strand, within CA264_04295at 991.591 kb on - strand, within CA264_04295at 991.638 kb on - strand, within CA264_04295at 991.667 kb on + strand, within CA264_04295at 991.703 kb on - strand, within CA264_04295at 991.710 kb on + strand, within CA264_04295at 991.943 kb on - strand, within CA264_04295at 991.951 kb on + strand, within CA264_04295at 991.951 kb on + strand, within CA264_04295at 991.988 kb on - strandat 992.010 kb on + strandat 992.010 kb on + strandat 992.053 kb on - strandat 992.097 kb on + strandat 992.098 kb on - strandat 992.101 kb on - strandat 992.101 kb on - strandat 992.116 kb on + strandat 992.116 kb on + strandat 992.117 kb on - strandat 992.117 kb on - strandat 992.117 kb on - strandat 992.140 kb on + strandat 992.140 kb on + strandat 992.141 kb on - strandat 992.152 kb on - strandat 992.173 kb on + strandat 992.272 kb on + strandat 992.272 kb on + strandat 992.272 kb on + strandat 992.276 kb on + strandat 992.276 kb on + strandat 992.276 kb on + strandat 992.324 kb on + strand, within CA264_04300at 992.337 kb on + strand, within CA264_04300at 992.397 kb on + strand, within CA264_04300at 992.407 kb on + strand, within CA264_04300at 992.573 kb on + strand, within CA264_04300at 992.731 kb on + strand, within CA264_04300at 992.732 kb on - strand, within CA264_04300at 992.912 kb on + strand, within CA264_04300at 993.000 kb on - strand, within CA264_04300at 993.110 kb on + strand, within CA264_04300at 993.111 kb on - strand, within CA264_04300at 993.116 kb on + strand, within CA264_04300at 993.120 kb on - strand, within CA264_04300

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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989,809 - CA264_04290 0.14 +0.2
989,821 - CA264_04290 0.15 +0.5
989,835 + CA264_04290 0.16 +0.8
989,886 + CA264_04290 0.21 -0.1
989,886 + CA264_04290 0.21 +0.2
990,127 - CA264_04290 0.43 +0.3
990,283 + CA264_04290 0.58 +0.6
990,308 + CA264_04290 0.60 -0.2
990,309 - CA264_04290 0.60 +0.3
990,320 + CA264_04290 0.61 +0.6
990,329 + CA264_04290 0.62 -0.2
990,330 - CA264_04290 0.62 +0.5
990,405 - CA264_04290 0.69 -0.3
990,439 + CA264_04290 0.72 +0.2
990,439 + CA264_04290 0.72 +0.6
990,730 + +0.1
990,757 - -0.3
990,757 - -0.8
990,779 - -0.3
990,814 - +0.1
990,814 - +0.0
990,829 - +0.4
990,968 + CA264_04295 0.17 -0.3
990,968 + CA264_04295 0.17 +0.6
991,053 - CA264_04295 0.23 +0.6
991,055 - CA264_04295 0.23 -0.6
991,055 - CA264_04295 0.23 +0.8
991,065 + CA264_04295 0.24 +1.3
991,105 + CA264_04295 0.26 +0.7
991,106 - CA264_04295 0.26 +0.0
991,106 - CA264_04295 0.26 +0.2
991,110 + CA264_04295 0.27 +0.1
991,111 - CA264_04295 0.27 -0.1
991,111 - CA264_04295 0.27 +0.1
991,111 - CA264_04295 0.27 +0.3
991,131 - CA264_04295 0.28 +0.2
991,133 + CA264_04295 0.28 +0.8
991,134 - CA264_04295 0.29 -0.8
991,134 - CA264_04295 0.29 -0.6
991,204 + CA264_04295 0.34 -0.9
991,362 + CA264_04295 0.45 +1.2
991,363 - CA264_04295 0.45 +0.5
991,367 + CA264_04295 0.45 +0.1
991,523 - CA264_04295 0.57 +0.2
991,570 + CA264_04295 0.60 +0.9
991,591 - CA264_04295 0.61 +0.2
991,591 - CA264_04295 0.61 +0.1
991,638 - CA264_04295 0.65 +0.5
991,667 + CA264_04295 0.67 +0.2
991,703 - CA264_04295 0.69 +0.8
991,710 + CA264_04295 0.70 -0.6
991,943 - CA264_04295 0.87 -1.6
991,951 + CA264_04295 0.87 +0.1
991,951 + CA264_04295 0.87 +0.4
991,988 - +0.2
992,010 + +0.3
992,010 + +0.3
992,053 - +0.5
992,097 + +1.1
992,098 - +1.4
992,101 - -0.1
992,101 - +1.3
992,116 + +0.4
992,116 + -0.0
992,117 - -0.2
992,117 - +0.3
992,117 - +1.9
992,140 + -0.7
992,140 + +0.1
992,141 - +1.8
992,152 - -0.7
992,173 + +0.1
992,272 + +0.6
992,272 + +0.1
992,272 + +0.4
992,276 + +0.3
992,276 + +0.8
992,276 + -0.1
992,324 + CA264_04300 0.11 +0.4
992,337 + CA264_04300 0.11 +0.7
992,397 + CA264_04300 0.15 -0.0
992,407 + CA264_04300 0.16 +0.9
992,573 + CA264_04300 0.25 -1.4
992,731 + CA264_04300 0.34 +0.4
992,732 - CA264_04300 0.34 +0.3
992,912 + CA264_04300 0.45 +0.4
993,000 - CA264_04300 0.50 -0.3
993,110 + CA264_04300 0.56 -0.2
993,111 - CA264_04300 0.56 +0.2
993,116 + CA264_04300 0.57 +0.2
993,120 - CA264_04300 0.57 -0.3

Or see this region's nucleotide sequence