Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04245

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04240 and CA264_04245 overlap by 31 nucleotidesCA264_04245 and CA264_04250 overlap by 19 nucleotides CA264_04240: CA264_04240 - NADH-quinone oxidoreductase subunit H, at 978,795 to 979,757 _04240 CA264_04245: CA264_04245 - NADH-quinone oxidoreductase subunit G, at 979,727 to 982,456 _04245 CA264_04250: CA264_04250 - NADH oxidoreductase (quinone) subunit F, at 982,438 to 983,739 _04250 Position (kb) 979 980 981 982 983Strain fitness (log2 ratio) -2 -1 0 1 2at 978.748 kb on - strandat 978.771 kb on + strandat 978.778 kb on - strandat 978.953 kb on + strand, within CA264_04240at 978.954 kb on - strand, within CA264_04240at 979.009 kb on + strand, within CA264_04240at 979.009 kb on + strand, within CA264_04240at 979.010 kb on - strand, within CA264_04240at 979.051 kb on + strand, within CA264_04240at 979.383 kb on + strand, within CA264_04240at 979.383 kb on + strand, within CA264_04240at 979.385 kb on + strand, within CA264_04240at 979.385 kb on + strand, within CA264_04240at 979.385 kb on + strand, within CA264_04240at 979.385 kb on + strand, within CA264_04240at 979.386 kb on - strand, within CA264_04240at 979.386 kb on - strand, within CA264_04240at 979.393 kb on + strand, within CA264_04240at 979.393 kb on + strand, within CA264_04240at 979.394 kb on - strand, within CA264_04240at 979.394 kb on - strand, within CA264_04240at 979.499 kb on + strand, within CA264_04240at 979.569 kb on - strand, within CA264_04240at 979.637 kb on - strand, within CA264_04240at 979.637 kb on - strand, within CA264_04240at 979.680 kb on - strandat 979.775 kb on + strandat 979.853 kb on - strandat 979.853 kb on - strandat 979.865 kb on - strandat 979.897 kb on + strandat 979.897 kb on + strandat 979.898 kb on - strandat 979.963 kb on - strandat 979.963 kb on - strandat 979.976 kb on - strandat 980.046 kb on + strand, within CA264_04245at 980.047 kb on - strand, within CA264_04245at 980.424 kb on - strand, within CA264_04245at 980.453 kb on - strand, within CA264_04245at 980.466 kb on + strand, within CA264_04245at 980.719 kb on + strand, within CA264_04245at 980.768 kb on - strand, within CA264_04245at 980.768 kb on - strand, within CA264_04245at 980.867 kb on + strand, within CA264_04245at 980.867 kb on + strand, within CA264_04245at 980.868 kb on - strand, within CA264_04245at 980.868 kb on - strand, within CA264_04245at 980.873 kb on + strand, within CA264_04245at 981.121 kb on - strand, within CA264_04245at 981.194 kb on + strand, within CA264_04245at 981.195 kb on - strand, within CA264_04245at 981.195 kb on - strand, within CA264_04245at 981.317 kb on - strand, within CA264_04245at 981.317 kb on - strand, within CA264_04245at 981.334 kb on + strand, within CA264_04245at 981.404 kb on + strand, within CA264_04245at 981.433 kb on + strand, within CA264_04245at 981.433 kb on + strand, within CA264_04245at 981.434 kb on - strand, within CA264_04245at 981.486 kb on + strand, within CA264_04245at 981.571 kb on + strand, within CA264_04245at 981.573 kb on + strand, within CA264_04245at 981.573 kb on + strand, within CA264_04245at 981.574 kb on - strand, within CA264_04245at 981.574 kb on - strand, within CA264_04245at 981.686 kb on + strand, within CA264_04245at 981.687 kb on - strand, within CA264_04245at 981.813 kb on + strand, within CA264_04245at 981.814 kb on - strand, within CA264_04245at 981.832 kb on + strand, within CA264_04245at 981.838 kb on + strand, within CA264_04245at 981.842 kb on + strand, within CA264_04245at 981.843 kb on - strand, within CA264_04245at 981.843 kb on - strand, within CA264_04245at 981.843 kb on - strand, within CA264_04245at 981.918 kb on + strand, within CA264_04245at 981.919 kb on - strand, within CA264_04245at 981.921 kb on - strand, within CA264_04245at 981.966 kb on + strand, within CA264_04245at 981.975 kb on + strand, within CA264_04245at 982.053 kb on + strand, within CA264_04245at 982.053 kb on + strand, within CA264_04245at 982.053 kb on + strand, within CA264_04245at 982.053 kb on + strand, within CA264_04245at 982.054 kb on - strand, within CA264_04245at 982.074 kb on + strand, within CA264_04245at 982.084 kb on - strand, within CA264_04245at 982.300 kb on - strandat 982.418 kb on + strandat 982.440 kb on - strandat 982.440 kb on - strandat 982.443 kb on + strandat 982.443 kb on + strandat 982.443 kb on + strandat 982.593 kb on - strand, within CA264_04250at 982.660 kb on + strand, within CA264_04250at 982.660 kb on + strand, within CA264_04250at 982.829 kb on + strand, within CA264_04250at 982.908 kb on - strand, within CA264_04250at 983.012 kb on + strand, within CA264_04250at 983.091 kb on + strand, within CA264_04250at 983.092 kb on - strand, within CA264_04250at 983.266 kb on - strand, within CA264_04250at 983.281 kb on + strand, within CA264_04250at 983.290 kb on - strand, within CA264_04250at 983.298 kb on - strand, within CA264_04250at 983.310 kb on - strand, within CA264_04250at 983.321 kb on - strand, within CA264_04250at 983.355 kb on - strand, within CA264_04250at 983.355 kb on - strand, within CA264_04250at 983.375 kb on + strand, within CA264_04250at 983.393 kb on - strand, within CA264_04250

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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978,748 - +0.6
978,771 + -0.7
978,778 - -0.4
978,953 + CA264_04240 0.16 -0.2
978,954 - CA264_04240 0.17 -0.9
979,009 + CA264_04240 0.22 -0.5
979,009 + CA264_04240 0.22 -0.1
979,010 - CA264_04240 0.22 -0.8
979,051 + CA264_04240 0.27 -2.3
979,383 + CA264_04240 0.61 +0.1
979,383 + CA264_04240 0.61 +0.1
979,385 + CA264_04240 0.61 +0.7
979,385 + CA264_04240 0.61 -0.2
979,385 + CA264_04240 0.61 +0.1
979,385 + CA264_04240 0.61 -0.9
979,386 - CA264_04240 0.61 -1.0
979,386 - CA264_04240 0.61 +0.3
979,393 + CA264_04240 0.62 -0.3
979,393 + CA264_04240 0.62 +0.5
979,394 - CA264_04240 0.62 -0.1
979,394 - CA264_04240 0.62 +0.2
979,499 + CA264_04240 0.73 -0.4
979,569 - CA264_04240 0.80 -0.3
979,637 - CA264_04240 0.87 -0.3
979,637 - CA264_04240 0.87 -0.6
979,680 - -0.3
979,775 + -0.5
979,853 - +0.5
979,853 - -0.0
979,865 - -0.2
979,897 + +0.0
979,897 + +0.6
979,898 - +0.3
979,963 - -0.1
979,963 - -0.2
979,976 - -0.1
980,046 + CA264_04245 0.12 -0.2
980,047 - CA264_04245 0.12 +0.1
980,424 - CA264_04245 0.26 -0.3
980,453 - CA264_04245 0.27 -0.2
980,466 + CA264_04245 0.27 -0.1
980,719 + CA264_04245 0.36 -0.3
980,768 - CA264_04245 0.38 -0.2
980,768 - CA264_04245 0.38 -1.2
980,867 + CA264_04245 0.42 +0.3
980,867 + CA264_04245 0.42 -0.1
980,868 - CA264_04245 0.42 -0.5
980,868 - CA264_04245 0.42 -0.5
980,873 + CA264_04245 0.42 +0.4
981,121 - CA264_04245 0.51 +0.7
981,194 + CA264_04245 0.54 -0.5
981,195 - CA264_04245 0.54 -1.3
981,195 - CA264_04245 0.54 -2.1
981,317 - CA264_04245 0.58 +1.9
981,317 - CA264_04245 0.58 +0.3
981,334 + CA264_04245 0.59 -0.5
981,404 + CA264_04245 0.61 +0.0
981,433 + CA264_04245 0.62 +0.7
981,433 + CA264_04245 0.62 -0.7
981,434 - CA264_04245 0.63 -0.0
981,486 + CA264_04245 0.64 -0.0
981,571 + CA264_04245 0.68 -0.6
981,573 + CA264_04245 0.68 +0.4
981,573 + CA264_04245 0.68 +0.6
981,574 - CA264_04245 0.68 +0.1
981,574 - CA264_04245 0.68 -0.4
981,686 + CA264_04245 0.72 -0.1
981,687 - CA264_04245 0.72 -0.6
981,813 + CA264_04245 0.76 +0.4
981,814 - CA264_04245 0.76 -0.1
981,832 + CA264_04245 0.77 -0.3
981,838 + CA264_04245 0.77 -0.2
981,842 + CA264_04245 0.77 +0.4
981,843 - CA264_04245 0.78 -0.3
981,843 - CA264_04245 0.78 +0.2
981,843 - CA264_04245 0.78 -0.1
981,918 + CA264_04245 0.80 +0.2
981,919 - CA264_04245 0.80 -0.8
981,921 - CA264_04245 0.80 -0.2
981,966 + CA264_04245 0.82 -0.8
981,975 + CA264_04245 0.82 +1.1
982,053 + CA264_04245 0.85 -0.0
982,053 + CA264_04245 0.85 +0.2
982,053 + CA264_04245 0.85 -0.1
982,053 + CA264_04245 0.85 -0.2
982,054 - CA264_04245 0.85 +1.8
982,074 + CA264_04245 0.86 +0.1
982,084 - CA264_04245 0.86 -0.0
982,300 - -0.0
982,418 + -0.5
982,440 - +0.5
982,440 - +0.5
982,443 + +1.1
982,443 + -0.3
982,443 + -0.4
982,593 - CA264_04250 0.12 +0.2
982,660 + CA264_04250 0.17 -0.5
982,660 + CA264_04250 0.17 -0.4
982,829 + CA264_04250 0.30 +0.9
982,908 - CA264_04250 0.36 -0.3
983,012 + CA264_04250 0.44 +1.1
983,091 + CA264_04250 0.50 -1.7
983,092 - CA264_04250 0.50 -1.3
983,266 - CA264_04250 0.64 +0.7
983,281 + CA264_04250 0.65 +0.4
983,290 - CA264_04250 0.65 +1.2
983,298 - CA264_04250 0.66 +0.6
983,310 - CA264_04250 0.67 -0.2
983,321 - CA264_04250 0.68 +1.3
983,355 - CA264_04250 0.70 +0.3
983,355 - CA264_04250 0.70 -0.4
983,375 + CA264_04250 0.72 +0.6
983,393 - CA264_04250 0.73 +0.5

Or see this region's nucleotide sequence