Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04230 and CA264_04235 are separated by 4 nucleotides CA264_04235 and CA264_04240 are separated by 231 nucleotides CA264_04240 and CA264_04245 overlap by 31 nucleotides
CA264_04230: CA264_04230 - NADH:ubiquinone oxidoreductase subunit J, at 977,507 to 978,043
_04230
CA264_04235: CA264_04235 - NADH-quinone oxidoreductase subunit I, at 978,048 to 978,563
_04235
CA264_04240: CA264_04240 - NADH-quinone oxidoreductase subunit H, at 978,795 to 979,757
_04240
CA264_04245: CA264_04245 - NADH-quinone oxidoreductase subunit G, at 979,727 to 982,456
_04245
Position (kb) 978
979
980 Strain fitness (log2 ratio) -2
-1
0
1 at 978.050 kb on - strand at 978.057 kb on + strand at 978.058 kb on - strand at 978.058 kb on - strand at 978.058 kb on - strand at 978.058 kb on - strand at 978.139 kb on + strand, within CA264_04235 at 978.139 kb on + strand, within CA264_04235 at 978.140 kb on - strand, within CA264_04235 at 978.142 kb on + strand, within CA264_04235 at 978.142 kb on + strand, within CA264_04235 at 978.143 kb on - strand, within CA264_04235 at 978.143 kb on - strand, within CA264_04235 at 978.148 kb on + strand, within CA264_04235 at 978.196 kb on + strand, within CA264_04235 at 978.256 kb on + strand, within CA264_04235 at 978.256 kb on + strand, within CA264_04235 at 978.280 kb on + strand, within CA264_04235 at 978.376 kb on - strand, within CA264_04235 at 978.494 kb on - strand, within CA264_04235 at 978.543 kb on - strand at 978.557 kb on + strand at 978.563 kb on + strand at 978.564 kb on - strand at 978.564 kb on - strand at 978.586 kb on + strand at 978.588 kb on + strand at 978.641 kb on + strand at 978.641 kb on + strand at 978.664 kb on + strand at 978.748 kb on - strand at 978.771 kb on + strand at 978.778 kb on - strand at 978.953 kb on + strand, within CA264_04240 at 978.954 kb on - strand, within CA264_04240 at 979.009 kb on + strand, within CA264_04240 at 979.009 kb on + strand, within CA264_04240 at 979.010 kb on - strand, within CA264_04240 at 979.051 kb on + strand, within CA264_04240 at 979.383 kb on + strand, within CA264_04240 at 979.383 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.386 kb on - strand, within CA264_04240 at 979.386 kb on - strand, within CA264_04240 at 979.393 kb on + strand, within CA264_04240 at 979.393 kb on + strand, within CA264_04240 at 979.394 kb on - strand, within CA264_04240 at 979.394 kb on - strand, within CA264_04240 at 979.499 kb on + strand, within CA264_04240 at 979.569 kb on - strand, within CA264_04240 at 979.637 kb on - strand, within CA264_04240 at 979.637 kb on - strand, within CA264_04240 at 979.680 kb on - strand at 979.775 kb on + strand at 979.853 kb on - strand at 979.853 kb on - strand at 979.865 kb on - strand at 979.897 kb on + strand at 979.897 kb on + strand at 979.898 kb on - strand at 979.963 kb on - strand at 979.963 kb on - strand at 979.976 kb on - strand at 980.046 kb on + strand, within CA264_04245 at 980.047 kb on - strand, within CA264_04245 at 980.424 kb on - strand, within CA264_04245 at 980.453 kb on - strand, within CA264_04245 at 980.466 kb on + strand, within CA264_04245 at 980.719 kb on + strand, within CA264_04245
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 978,050 - +0.7 978,057 + -0.5 978,058 - +0.4 978,058 - +0.1 978,058 - -1.7 978,058 - +0.0 978,139 + CA264_04235 0.18 +0.3 978,139 + CA264_04235 0.18 -0.3 978,140 - CA264_04235 0.18 -1.2 978,142 + CA264_04235 0.18 -0.1 978,142 + CA264_04235 0.18 -0.8 978,143 - CA264_04235 0.18 +0.0 978,143 - CA264_04235 0.18 +0.0 978,148 + CA264_04235 0.19 -1.0 978,196 + CA264_04235 0.29 +0.5 978,256 + CA264_04235 0.40 -0.3 978,256 + CA264_04235 0.40 -1.1 978,280 + CA264_04235 0.45 -0.9 978,376 - CA264_04235 0.64 -0.2 978,494 - CA264_04235 0.86 +0.1 978,543 - -1.1 978,557 + +0.9 978,563 + -0.2 978,564 - -0.3 978,564 - -0.4 978,586 + -0.3 978,588 + -0.2 978,641 + +0.2 978,641 + +0.8 978,664 + +0.5 978,748 - +0.6 978,771 + -0.7 978,778 - -0.4 978,953 + CA264_04240 0.16 -0.2 978,954 - CA264_04240 0.17 -0.9 979,009 + CA264_04240 0.22 -0.5 979,009 + CA264_04240 0.22 -0.1 979,010 - CA264_04240 0.22 -0.8 979,051 + CA264_04240 0.27 -2.3 979,383 + CA264_04240 0.61 +0.1 979,383 + CA264_04240 0.61 +0.1 979,385 + CA264_04240 0.61 +0.7 979,385 + CA264_04240 0.61 -0.2 979,385 + CA264_04240 0.61 +0.1 979,385 + CA264_04240 0.61 -0.9 979,386 - CA264_04240 0.61 -1.0 979,386 - CA264_04240 0.61 +0.3 979,393 + CA264_04240 0.62 -0.3 979,393 + CA264_04240 0.62 +0.5 979,394 - CA264_04240 0.62 -0.1 979,394 - CA264_04240 0.62 +0.2 979,499 + CA264_04240 0.73 -0.4 979,569 - CA264_04240 0.80 -0.3 979,637 - CA264_04240 0.87 -0.3 979,637 - CA264_04240 0.87 -0.6 979,680 - -0.3 979,775 + -0.5 979,853 - +0.5 979,853 - -0.0 979,865 - -0.2 979,897 + +0.0 979,897 + +0.6 979,898 - +0.3 979,963 - -0.1 979,963 - -0.2 979,976 - -0.1 980,046 + CA264_04245 0.12 -0.2 980,047 - CA264_04245 0.12 +0.1 980,424 - CA264_04245 0.26 -0.3 980,453 - CA264_04245 0.27 -0.2 980,466 + CA264_04245 0.27 -0.1 980,719 + CA264_04245 0.36 -0.3
Or see this region's nucleotide sequence