Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04010

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04000 and CA264_04005 are separated by 274 nucleotidesCA264_04005 and CA264_04010 are separated by 43 nucleotidesCA264_04010 and CA264_04015 are separated by 174 nucleotides CA264_04000: CA264_04000 - hypothetical protein, at 927,321 to 928,562 _04000 CA264_04005: CA264_04005 - transporter, at 928,837 to 929,250 _04005 CA264_04010: CA264_04010 - YeeE/YedE family protein, at 929,294 to 929,851 _04010 CA264_04015: CA264_04015 - MBL fold metallo-hydrolase, at 930,026 to 931,375 _04015 Position (kb) 929 930Strain fitness (log2 ratio) -2 -1 0 1 2at 928.362 kb on + strand, within CA264_04000at 928.363 kb on - strand, within CA264_04000at 928.364 kb on + strand, within CA264_04000at 928.364 kb on + strand, within CA264_04000at 928.373 kb on + strand, within CA264_04000at 928.373 kb on + strand, within CA264_04000at 928.373 kb on + strand, within CA264_04000at 928.374 kb on - strand, within CA264_04000at 928.374 kb on - strand, within CA264_04000at 928.376 kb on - strand, within CA264_04000at 928.377 kb on + strand, within CA264_04000at 928.546 kb on + strandat 928.546 kb on + strandat 928.634 kb on - strandat 928.640 kb on - strandat 928.640 kb on - strandat 928.640 kb on - strandat 928.644 kb on - strandat 928.674 kb on - strandat 928.685 kb on + strandat 928.686 kb on - strandat 928.686 kb on - strandat 928.693 kb on + strandat 928.694 kb on - strandat 928.786 kb on + strandat 928.787 kb on - strandat 928.802 kb on + strandat 928.803 kb on - strandat 928.838 kb on + strandat 928.838 kb on + strandat 928.838 kb on + strandat 928.838 kb on + strandat 928.839 kb on - strandat 928.868 kb on + strandat 928.868 kb on + strandat 928.868 kb on + strandat 928.868 kb on + strandat 928.869 kb on - strandat 928.869 kb on - strandat 928.869 kb on - strandat 928.869 kb on - strandat 928.872 kb on + strandat 928.872 kb on + strandat 928.872 kb on + strandat 928.873 kb on - strandat 928.873 kb on - strandat 928.873 kb on - strandat 928.873 kb on - strandat 928.873 kb on - strandat 928.873 kb on - strandat 928.874 kb on + strandat 928.874 kb on + strandat 928.874 kb on + strandat 928.874 kb on + strandat 928.875 kb on - strandat 928.875 kb on - strandat 928.875 kb on - strandat 928.875 kb on - strandat 928.875 kb on - strandat 928.875 kb on - strandat 928.931 kb on - strand, within CA264_04005at 928.931 kb on - strand, within CA264_04005at 928.944 kb on + strand, within CA264_04005at 928.944 kb on + strand, within CA264_04005at 928.945 kb on - strand, within CA264_04005at 928.945 kb on - strand, within CA264_04005at 929.038 kb on + strand, within CA264_04005at 929.073 kb on - strand, within CA264_04005at 929.087 kb on + strand, within CA264_04005at 929.088 kb on - strand, within CA264_04005at 929.088 kb on - strand, within CA264_04005at 929.133 kb on - strand, within CA264_04005at 929.255 kb on + strandat 929.255 kb on + strandat 929.258 kb on + strandat 929.258 kb on + strandat 929.414 kb on - strand, within CA264_04010at 929.445 kb on - strand, within CA264_04010at 929.449 kb on + strand, within CA264_04010at 929.449 kb on + strand, within CA264_04010at 929.484 kb on - strand, within CA264_04010at 929.567 kb on + strand, within CA264_04010at 929.567 kb on + strand, within CA264_04010at 929.646 kb on - strand, within CA264_04010at 929.838 kb on - strandat 929.847 kb on - strandat 929.930 kb on - strandat 929.954 kb on + strandat 929.955 kb on - strandat 929.955 kb on - strandat 929.956 kb on + strandat 930.053 kb on + strandat 930.260 kb on + strand, within CA264_04015at 930.276 kb on + strand, within CA264_04015at 930.276 kb on + strand, within CA264_04015at 930.363 kb on - strand, within CA264_04015at 930.363 kb on - strand, within CA264_04015at 930.375 kb on + strand, within CA264_04015at 930.376 kb on - strand, within CA264_04015at 930.380 kb on + strand, within CA264_04015at 930.381 kb on - strand, within CA264_04015at 930.401 kb on + strand, within CA264_04015at 930.401 kb on + strand, within CA264_04015at 930.402 kb on - strand, within CA264_04015at 930.402 kb on - strand, within CA264_04015at 930.431 kb on + strand, within CA264_04015at 930.431 kb on + strand, within CA264_04015at 930.431 kb on + strand, within CA264_04015at 930.432 kb on - strand, within CA264_04015at 930.432 kb on - strand, within CA264_04015at 930.438 kb on + strand, within CA264_04015at 930.506 kb on - strand, within CA264_04015at 930.519 kb on + strand, within CA264_04015at 930.520 kb on - strand, within CA264_04015at 930.520 kb on - strand, within CA264_04015at 930.520 kb on - strand, within CA264_04015at 930.619 kb on + strand, within CA264_04015at 930.631 kb on + strand, within CA264_04015at 930.632 kb on - strand, within CA264_04015at 930.744 kb on + strand, within CA264_04015at 930.767 kb on - strand, within CA264_04015

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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928,362 + CA264_04000 0.84 -0.2
928,363 - CA264_04000 0.84 -0.6
928,364 + CA264_04000 0.84 -0.3
928,364 + CA264_04000 0.84 +0.1
928,373 + CA264_04000 0.85 -1.2
928,373 + CA264_04000 0.85 -0.1
928,373 + CA264_04000 0.85 -0.5
928,374 - CA264_04000 0.85 +1.2
928,374 - CA264_04000 0.85 -1.0
928,376 - CA264_04000 0.85 -0.8
928,377 + CA264_04000 0.85 +1.8
928,546 + +1.4
928,546 + +0.8
928,634 - +0.5
928,640 - +0.8
928,640 - +1.5
928,640 - -1.1
928,644 - -0.1
928,674 - +0.4
928,685 + +0.1
928,686 - -0.1
928,686 - +0.9
928,693 + -0.4
928,694 - -0.3
928,786 + +1.0
928,787 - -0.5
928,802 + +1.3
928,803 - +0.0
928,838 + -0.8
928,838 + -0.7
928,838 + +0.2
928,838 + -0.2
928,839 - -0.5
928,868 + -1.1
928,868 + -0.1
928,868 + -0.7
928,868 + -0.4
928,869 - -0.9
928,869 - -0.3
928,869 - +0.1
928,869 - -0.4
928,872 + -0.4
928,872 + -0.1
928,872 + +0.7
928,873 - -1.1
928,873 - +0.0
928,873 - -0.6
928,873 - -0.3
928,873 - -0.2
928,873 - -1.2
928,874 + -0.1
928,874 + -0.1
928,874 + -0.6
928,874 + -0.5
928,875 - -0.6
928,875 - -0.2
928,875 - +1.3
928,875 - -0.4
928,875 - -0.3
928,875 - -0.4
928,931 - CA264_04005 0.23 +0.4
928,931 - CA264_04005 0.23 -0.8
928,944 + CA264_04005 0.26 -0.2
928,944 + CA264_04005 0.26 -1.4
928,945 - CA264_04005 0.26 +0.2
928,945 - CA264_04005 0.26 +0.4
929,038 + CA264_04005 0.49 -0.3
929,073 - CA264_04005 0.57 +1.1
929,087 + CA264_04005 0.60 -0.0
929,088 - CA264_04005 0.61 +0.1
929,088 - CA264_04005 0.61 +0.0
929,133 - CA264_04005 0.71 -0.8
929,255 + -0.2
929,255 + -0.8
929,258 + -0.7
929,258 + +0.4
929,414 - CA264_04010 0.22 -2.0
929,445 - CA264_04010 0.27 -0.8
929,449 + CA264_04010 0.28 -0.2
929,449 + CA264_04010 0.28 -0.5
929,484 - CA264_04010 0.34 -0.3
929,567 + CA264_04010 0.49 -0.6
929,567 + CA264_04010 0.49 -0.8
929,646 - CA264_04010 0.63 -0.9
929,838 - -0.8
929,847 - -0.9
929,930 - -0.3
929,954 + +0.1
929,955 - +0.0
929,955 - -0.1
929,956 + +0.2
930,053 + -0.2
930,260 + CA264_04015 0.17 -0.1
930,276 + CA264_04015 0.19 +1.5
930,276 + CA264_04015 0.19 -0.3
930,363 - CA264_04015 0.25 -0.1
930,363 - CA264_04015 0.25 -0.1
930,375 + CA264_04015 0.26 +0.6
930,376 - CA264_04015 0.26 -0.1
930,380 + CA264_04015 0.26 -0.0
930,381 - CA264_04015 0.26 -0.5
930,401 + CA264_04015 0.28 -0.6
930,401 + CA264_04015 0.28 -0.2
930,402 - CA264_04015 0.28 -0.4
930,402 - CA264_04015 0.28 +0.7
930,431 + CA264_04015 0.30 -0.9
930,431 + CA264_04015 0.30 +0.2
930,431 + CA264_04015 0.30 -0.2
930,432 - CA264_04015 0.30 -0.8
930,432 - CA264_04015 0.30 -0.5
930,438 + CA264_04015 0.31 +0.9
930,506 - CA264_04015 0.36 -0.0
930,519 + CA264_04015 0.37 +0.6
930,520 - CA264_04015 0.37 +0.1
930,520 - CA264_04015 0.37 +0.5
930,520 - CA264_04015 0.37 -0.0
930,619 + CA264_04015 0.44 +0.2
930,631 + CA264_04015 0.45 +0.1
930,632 - CA264_04015 0.45 -0.1
930,744 + CA264_04015 0.53 +0.1
930,767 - CA264_04015 0.55 -0.3

Or see this region's nucleotide sequence