Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03805 and CA264_03810 are separated by 99 nucleotides CA264_03810 and CA264_03815 are separated by 6 nucleotides
CA264_03805: CA264_03805 - serine protease, at 889,515 to 890,885
_03805
CA264_03810: CA264_03810 - hypothetical protein, at 890,985 to 891,761
_03810
CA264_03815: CA264_03815 - peptidoglycan-binding protein, at 891,768 to 892,748
_03815
Position (kb) 890
891
892 Strain fitness (log2 ratio) -1
0
1
2 at 890.056 kb on + strand, within CA264_03805 at 890.056 kb on + strand, within CA264_03805 at 890.057 kb on - strand, within CA264_03805 at 890.059 kb on + strand, within CA264_03805 at 890.060 kb on - strand, within CA264_03805 at 890.060 kb on - strand, within CA264_03805 at 890.060 kb on - strand, within CA264_03805 at 890.060 kb on - strand, within CA264_03805 at 890.071 kb on + strand, within CA264_03805 at 890.072 kb on - strand, within CA264_03805 at 890.113 kb on - strand, within CA264_03805 at 890.137 kb on + strand, within CA264_03805 at 890.153 kb on + strand, within CA264_03805 at 890.337 kb on - strand, within CA264_03805 at 890.368 kb on - strand, within CA264_03805 at 890.368 kb on - strand, within CA264_03805 at 890.435 kb on + strand, within CA264_03805 at 890.449 kb on + strand, within CA264_03805 at 890.449 kb on + strand, within CA264_03805 at 890.449 kb on + strand, within CA264_03805 at 890.450 kb on - strand, within CA264_03805 at 890.458 kb on + strand, within CA264_03805 at 890.459 kb on - strand, within CA264_03805 at 890.530 kb on + strand, within CA264_03805 at 890.596 kb on + strand, within CA264_03805 at 890.596 kb on + strand, within CA264_03805 at 890.596 kb on + strand, within CA264_03805 at 890.597 kb on - strand, within CA264_03805 at 890.597 kb on - strand, within CA264_03805 at 890.846 kb on - strand at 890.848 kb on + strand at 890.848 kb on + strand at 890.848 kb on + strand at 890.848 kb on + strand at 890.849 kb on - strand at 890.902 kb on - strand at 890.923 kb on - strand at 890.925 kb on + strand at 890.946 kb on - strand at 890.946 kb on - strand at 890.946 kb on - strand at 890.946 kb on - strand at 890.951 kb on - strand at 890.951 kb on - strand at 890.951 kb on - strand at 890.963 kb on + strand at 890.963 kb on + strand at 891.067 kb on - strand, within CA264_03810 at 891.451 kb on - strand, within CA264_03810 at 891.529 kb on + strand, within CA264_03810 at 891.529 kb on + strand, within CA264_03810 at 891.530 kb on - strand, within CA264_03810 at 891.595 kb on + strand, within CA264_03810 at 891.595 kb on + strand, within CA264_03810 at 891.596 kb on - strand, within CA264_03810 at 891.608 kb on - strand, within CA264_03810 at 891.710 kb on - strand at 891.773 kb on - strand at 891.773 kb on - strand at 891.773 kb on - strand at 891.859 kb on + strand at 891.900 kb on - strand, within CA264_03815 at 891.985 kb on + strand, within CA264_03815 at 892.122 kb on - strand, within CA264_03815 at 892.291 kb on - strand, within CA264_03815 at 892.446 kb on + strand, within CA264_03815 at 892.539 kb on + strand, within CA264_03815 at 892.539 kb on + strand, within CA264_03815 at 892.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 890,056 + CA264_03805 0.39 -0.3 890,056 + CA264_03805 0.39 +1.3 890,057 - CA264_03805 0.40 -0.2 890,059 + CA264_03805 0.40 +1.2 890,060 - CA264_03805 0.40 +0.9 890,060 - CA264_03805 0.40 +0.6 890,060 - CA264_03805 0.40 -0.7 890,060 - CA264_03805 0.40 +1.4 890,071 + CA264_03805 0.41 +0.2 890,072 - CA264_03805 0.41 -0.5 890,113 - CA264_03805 0.44 +0.6 890,137 + CA264_03805 0.45 -0.4 890,153 + CA264_03805 0.47 -0.8 890,337 - CA264_03805 0.60 +1.4 890,368 - CA264_03805 0.62 -0.5 890,368 - CA264_03805 0.62 +2.3 890,435 + CA264_03805 0.67 -0.0 890,449 + CA264_03805 0.68 -1.6 890,449 + CA264_03805 0.68 -0.1 890,449 + CA264_03805 0.68 -0.8 890,450 - CA264_03805 0.68 +0.3 890,458 + CA264_03805 0.69 +0.1 890,459 - CA264_03805 0.69 +0.3 890,530 + CA264_03805 0.74 -0.5 890,596 + CA264_03805 0.79 +0.1 890,596 + CA264_03805 0.79 -0.4 890,596 + CA264_03805 0.79 +1.8 890,597 - CA264_03805 0.79 -0.9 890,597 - CA264_03805 0.79 +1.9 890,846 - +0.0 890,848 + -0.6 890,848 + -0.0 890,848 + -0.2 890,848 + -0.4 890,849 - -0.5 890,902 - -0.3 890,923 - +0.1 890,925 + -0.7 890,946 - -0.4 890,946 - -0.1 890,946 - +1.1 890,946 - +0.0 890,951 - +0.3 890,951 - +0.3 890,951 - -0.9 890,963 + -0.5 890,963 + -1.6 891,067 - CA264_03810 0.11 -1.6 891,451 - CA264_03810 0.60 -0.7 891,529 + CA264_03810 0.70 -1.2 891,529 + CA264_03810 0.70 +0.3 891,530 - CA264_03810 0.70 +0.7 891,595 + CA264_03810 0.79 +1.3 891,595 + CA264_03810 0.79 -0.4 891,596 - CA264_03810 0.79 -1.1 891,608 - CA264_03810 0.80 +0.3 891,710 - -1.1 891,773 - -0.5 891,773 - +0.9 891,773 - +1.2 891,859 + -1.1 891,900 - CA264_03815 0.13 -1.7 891,985 + CA264_03815 0.22 -1.5 892,122 - CA264_03815 0.36 -0.9 892,291 - CA264_03815 0.53 -1.1 892,446 + CA264_03815 0.69 -1.3 892,539 + CA264_03815 0.79 -0.8 892,539 + CA264_03815 0.79 +0.2 892,737 + -1.1
Or see this region's nucleotide sequence