Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03630 and CA264_03635 are separated by 212 nucleotides CA264_03635 and CA264_03640 are separated by 195 nucleotides CA264_03640 and CA264_03645 are separated by 183 nucleotides
CA264_03630: CA264_03630 - PAS domain-containing sensor histidine kinase, at 846,043 to 848,001
_03630
CA264_03635: CA264_03635 - DoxX family protein, at 848,214 to 848,666
_03635
CA264_03640: CA264_03640 - TetR family transcriptional regulator, at 848,862 to 849,434
_03640
CA264_03645: CA264_03645 - hypothetical protein, at 849,618 to 850,949
_03645
Position (kb) 848
849 Strain fitness (log2 ratio) -2
-1
0
1
2 at 847.506 kb on + strand, within CA264_03630 at 847.726 kb on - strand, within CA264_03630 at 847.734 kb on - strand, within CA264_03630 at 847.746 kb on + strand, within CA264_03630 at 847.746 kb on + strand, within CA264_03630 at 847.763 kb on - strand, within CA264_03630 at 847.763 kb on - strand, within CA264_03630 at 847.834 kb on - strand at 847.854 kb on - strand at 847.914 kb on + strand at 847.915 kb on - strand at 847.918 kb on - strand at 847.918 kb on - strand at 847.929 kb on + strand at 847.960 kb on + strand at 847.961 kb on - strand at 847.961 kb on - strand at 848.089 kb on - strand at 848.105 kb on + strand at 848.128 kb on + strand at 848.147 kb on - strand at 848.150 kb on + strand at 848.150 kb on + strand at 848.151 kb on - strand at 848.198 kb on - strand at 848.282 kb on + strand, within CA264_03635 at 848.438 kb on + strand, within CA264_03635 at 848.552 kb on + strand, within CA264_03635 at 848.552 kb on + strand, within CA264_03635 at 848.553 kb on - strand, within CA264_03635 at 848.553 kb on - strand, within CA264_03635 at 848.553 kb on - strand, within CA264_03635 at 848.553 kb on - strand, within CA264_03635 at 848.562 kb on + strand, within CA264_03635 at 848.562 kb on + strand, within CA264_03635 at 848.692 kb on - strand at 848.695 kb on + strand at 848.696 kb on - strand at 848.696 kb on - strand at 848.696 kb on - strand at 848.699 kb on + strand at 848.700 kb on - strand at 848.700 kb on - strand at 848.700 kb on - strand at 848.700 kb on - strand at 848.707 kb on + strand at 848.707 kb on + strand at 848.809 kb on + strand at 848.810 kb on - strand at 848.810 kb on - strand at 848.818 kb on - strand at 848.939 kb on + strand, within CA264_03640 at 848.939 kb on + strand, within CA264_03640 at 848.940 kb on - strand, within CA264_03640 at 848.940 kb on - strand, within CA264_03640 at 849.113 kb on + strand, within CA264_03640 at 849.141 kb on + strand, within CA264_03640 at 849.143 kb on + strand, within CA264_03640 at 849.183 kb on - strand, within CA264_03640 at 849.183 kb on - strand, within CA264_03640 at 849.200 kb on + strand, within CA264_03640 at 849.292 kb on + strand, within CA264_03640 at 849.454 kb on + strand at 849.455 kb on - strand at 849.513 kb on + strand at 849.593 kb on - strand at 849.615 kb on + strand at 849.616 kb on - strand at 849.643 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 847,506 + CA264_03630 0.75 -2.4 847,726 - CA264_03630 0.86 -0.7 847,734 - CA264_03630 0.86 +0.4 847,746 + CA264_03630 0.87 +0.3 847,746 + CA264_03630 0.87 -0.9 847,763 - CA264_03630 0.88 +0.9 847,763 - CA264_03630 0.88 -1.0 847,834 - -0.1 847,854 - +0.0 847,914 + -0.1 847,915 - +0.3 847,918 - -0.0 847,918 - -0.9 847,929 + -1.3 847,960 + +0.3 847,961 - -0.4 847,961 - -0.9 848,089 - +0.4 848,105 + -1.2 848,128 + -0.3 848,147 - -1.2 848,150 + -0.5 848,150 + -1.1 848,151 - +0.4 848,198 - -0.0 848,282 + CA264_03635 0.15 -0.8 848,438 + CA264_03635 0.49 -1.2 848,552 + CA264_03635 0.75 -1.8 848,552 + CA264_03635 0.75 -1.6 848,553 - CA264_03635 0.75 -0.4 848,553 - CA264_03635 0.75 +0.2 848,553 - CA264_03635 0.75 -0.8 848,553 - CA264_03635 0.75 -0.6 848,562 + CA264_03635 0.77 -2.4 848,562 + CA264_03635 0.77 +1.9 848,692 - -0.7 848,695 + -1.1 848,696 - -1.1 848,696 - -0.1 848,696 - +0.1 848,699 + -1.3 848,700 - -0.6 848,700 - -0.0 848,700 - -0.1 848,700 - +0.0 848,707 + -0.2 848,707 + -2.5 848,809 + +0.3 848,810 - -0.1 848,810 - +0.0 848,818 - -0.5 848,939 + CA264_03640 0.13 -1.6 848,939 + CA264_03640 0.13 -2.0 848,940 - CA264_03640 0.14 -0.2 848,940 - CA264_03640 0.14 -0.9 849,113 + CA264_03640 0.44 -0.5 849,141 + CA264_03640 0.49 +0.7 849,143 + CA264_03640 0.49 -2.3 849,183 - CA264_03640 0.56 -0.6 849,183 - CA264_03640 0.56 -0.5 849,200 + CA264_03640 0.59 -1.7 849,292 + CA264_03640 0.75 -1.1 849,454 + -2.6 849,455 - -0.4 849,513 + -1.5 849,593 - -2.1 849,615 + -0.9 849,616 - +0.5 849,643 + +0.2
Or see this region's nucleotide sequence