Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02960

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02955 and CA264_02960 are separated by 37 nucleotidesCA264_02960 and CA264_02965 are separated by 28 nucleotidesCA264_02965 and CA264_02970 are separated by 154 nucleotides CA264_02955: CA264_02955 - undecaprenyl-phosphate glucose phosphotransferase, at 679,276 to 680,670 _02955 CA264_02960: CA264_02960 - glycosyltransferase, at 680,708 to 681,481 _02960 CA264_02965: CA264_02965 - hypothetical protein, at 681,510 to 681,707 _02965 CA264_02970: CA264_02970 - glucose-1-phosphate cytidylyltransferase, at 681,862 to 682,665 _02970 Position (kb) 680 681 682Strain fitness (log2 ratio) -2 -1 0 1 2at 679.825 kb on + strand, within CA264_02955at 679.826 kb on - strand, within CA264_02955at 679.827 kb on + strand, within CA264_02955at 679.897 kb on + strand, within CA264_02955at 679.969 kb on + strand, within CA264_02955at 680.016 kb on + strand, within CA264_02955at 680.016 kb on + strand, within CA264_02955at 680.069 kb on + strand, within CA264_02955at 680.179 kb on - strand, within CA264_02955at 680.251 kb on + strand, within CA264_02955at 680.278 kb on - strand, within CA264_02955at 680.456 kb on + strand, within CA264_02955at 680.457 kb on - strand, within CA264_02955at 680.457 kb on - strand, within CA264_02955at 680.457 kb on - strand, within CA264_02955at 680.457 kb on - strand, within CA264_02955at 680.467 kb on - strand, within CA264_02955at 680.569 kb on + strandat 680.569 kb on + strandat 680.569 kb on + strandat 680.570 kb on - strandat 680.581 kb on + strandat 680.581 kb on + strandat 680.582 kb on - strandat 680.582 kb on - strandat 680.601 kb on + strandat 680.602 kb on - strandat 680.646 kb on - strandat 680.646 kb on - strandat 680.665 kb on + strandat 680.666 kb on - strandat 680.676 kb on + strandat 680.676 kb on + strandat 680.740 kb on + strandat 680.752 kb on + strandat 680.753 kb on - strandat 680.794 kb on + strand, within CA264_02960at 680.797 kb on + strand, within CA264_02960at 680.798 kb on - strand, within CA264_02960at 680.811 kb on - strand, within CA264_02960at 680.978 kb on - strand, within CA264_02960at 680.978 kb on - strand, within CA264_02960at 681.029 kb on + strand, within CA264_02960at 681.284 kb on + strand, within CA264_02960at 681.285 kb on - strand, within CA264_02960at 681.285 kb on - strand, within CA264_02960at 681.285 kb on - strand, within CA264_02960at 681.285 kb on - strand, within CA264_02960at 681.294 kb on - strand, within CA264_02960at 681.294 kb on - strand, within CA264_02960at 681.294 kb on - strand, within CA264_02960at 681.354 kb on - strand, within CA264_02960at 681.476 kb on - strandat 681.480 kb on - strandat 681.480 kb on - strandat 681.537 kb on + strand, within CA264_02965at 681.537 kb on + strand, within CA264_02965at 681.538 kb on - strand, within CA264_02965at 681.559 kb on - strand, within CA264_02965at 681.559 kb on - strand, within CA264_02965at 681.591 kb on + strand, within CA264_02965at 681.591 kb on + strand, within CA264_02965at 681.593 kb on + strand, within CA264_02965at 681.594 kb on - strand, within CA264_02965at 681.607 kb on - strand, within CA264_02965at 681.672 kb on + strand, within CA264_02965at 681.673 kb on - strand, within CA264_02965at 681.677 kb on - strand, within CA264_02965at 681.719 kb on + strandat 681.746 kb on + strandat 681.846 kb on + strandat 681.854 kb on + strandat 681.858 kb on - strandat 681.859 kb on + strandat 681.860 kb on - strandat 681.874 kb on - strandat 681.875 kb on + strandat 681.875 kb on + strandat 681.875 kb on + strandat 681.980 kb on + strand, within CA264_02970at 681.980 kb on + strand, within CA264_02970at 681.981 kb on - strand, within CA264_02970at 681.983 kb on - strand, within CA264_02970at 681.983 kb on - strand, within CA264_02970at 681.992 kb on - strand, within CA264_02970at 681.992 kb on - strand, within CA264_02970at 682.070 kb on - strand, within CA264_02970at 682.221 kb on + strand, within CA264_02970at 682.462 kb on + strand, within CA264_02970at 682.463 kb on - strand, within CA264_02970

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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679,825 + CA264_02955 0.39 -0.2
679,826 - CA264_02955 0.39 -0.4
679,827 + CA264_02955 0.39 -0.0
679,897 + CA264_02955 0.45 -0.5
679,969 + CA264_02955 0.50 -0.4
680,016 + CA264_02955 0.53 -0.4
680,016 + CA264_02955 0.53 +0.6
680,069 + CA264_02955 0.57 -0.6
680,179 - CA264_02955 0.65 -0.4
680,251 + CA264_02955 0.70 -0.0
680,278 - CA264_02955 0.72 -0.4
680,456 + CA264_02955 0.85 -2.4
680,457 - CA264_02955 0.85 -0.3
680,457 - CA264_02955 0.85 -0.7
680,457 - CA264_02955 0.85 -0.2
680,457 - CA264_02955 0.85 -0.5
680,467 - CA264_02955 0.85 -1.5
680,569 + -0.1
680,569 + -0.6
680,569 + -0.1
680,570 - -0.2
680,581 + -0.5
680,581 + +0.8
680,582 - -0.3
680,582 - -0.1
680,601 + -0.1
680,602 - -0.1
680,646 - -0.1
680,646 - -0.2
680,665 + +0.1
680,666 - +0.2
680,676 + -0.3
680,676 + -0.1
680,740 + -0.7
680,752 + +0.6
680,753 - +0.4
680,794 + CA264_02960 0.11 +0.4
680,797 + CA264_02960 0.11 -0.1
680,798 - CA264_02960 0.12 -0.0
680,811 - CA264_02960 0.13 +0.3
680,978 - CA264_02960 0.35 +0.6
680,978 - CA264_02960 0.35 -1.4
681,029 + CA264_02960 0.41 -1.9
681,284 + CA264_02960 0.74 -0.1
681,285 - CA264_02960 0.75 +0.8
681,285 - CA264_02960 0.75 +0.2
681,285 - CA264_02960 0.75 +0.6
681,285 - CA264_02960 0.75 -0.5
681,294 - CA264_02960 0.76 +0.2
681,294 - CA264_02960 0.76 +0.5
681,294 - CA264_02960 0.76 -0.7
681,354 - CA264_02960 0.83 +0.4
681,476 - -0.2
681,480 - +1.8
681,480 - -1.7
681,537 + CA264_02965 0.14 -0.3
681,537 + CA264_02965 0.14 -0.9
681,538 - CA264_02965 0.14 -0.3
681,559 - CA264_02965 0.25 +0.0
681,559 - CA264_02965 0.25 +0.2
681,591 + CA264_02965 0.41 +0.5
681,591 + CA264_02965 0.41 -0.2
681,593 + CA264_02965 0.42 -0.8
681,594 - CA264_02965 0.42 -0.3
681,607 - CA264_02965 0.49 +1.4
681,672 + CA264_02965 0.82 -0.2
681,673 - CA264_02965 0.82 +0.4
681,677 - CA264_02965 0.84 +0.4
681,719 + +0.5
681,746 + -1.0
681,846 + -1.5
681,854 + -1.4
681,858 - +1.6
681,859 + +0.2
681,860 - -0.7
681,874 - -0.8
681,875 + +0.3
681,875 + +0.1
681,875 + -0.1
681,980 + CA264_02970 0.15 -0.6
681,980 + CA264_02970 0.15 -0.4
681,981 - CA264_02970 0.15 +0.3
681,983 - CA264_02970 0.15 +0.3
681,983 - CA264_02970 0.15 -0.1
681,992 - CA264_02970 0.16 +0.2
681,992 - CA264_02970 0.16 -1.5
682,070 - CA264_02970 0.26 +1.1
682,221 + CA264_02970 0.45 +0.1
682,462 + CA264_02970 0.75 -0.9
682,463 - CA264_02970 0.75 +0.1

Or see this region's nucleotide sequence