Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02635

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02625 and CA264_02630 are separated by 50 nucleotidesCA264_02630 and CA264_02635 are separated by 69 nucleotidesCA264_02635 and CA264_02640 are separated by 214 nucleotides CA264_02625: CA264_02625 - hypothetical protein, at 607,759 to 609,330 _02625 CA264_02630: CA264_02630 - carbonic anhydrase, at 609,381 to 610,022 _02630 CA264_02635: CA264_02635 - hypothetical protein, at 610,092 to 610,700 _02635 CA264_02640: CA264_02640 - SWFGD domain-containing protein, at 610,915 to 611,886 _02640 Position (kb) 610 611Strain fitness (log2 ratio) -1 0 1 2at 609.108 kb on + strand, within CA264_02625at 609.152 kb on + strand, within CA264_02625at 609.153 kb on - strand, within CA264_02625at 609.153 kb on - strand, within CA264_02625at 609.153 kb on - strand, within CA264_02625at 609.153 kb on - strand, within CA264_02625at 609.219 kb on - strandat 609.224 kb on - strandat 609.230 kb on + strandat 609.252 kb on + strandat 609.253 kb on - strandat 609.328 kb on + strandat 609.376 kb on + strandat 609.377 kb on - strandat 609.377 kb on - strandat 609.377 kb on - strandat 609.379 kb on - strandat 609.379 kb on - strandat 609.379 kb on - strandat 609.619 kb on - strand, within CA264_02630at 609.635 kb on + strand, within CA264_02630at 609.635 kb on + strand, within CA264_02630at 609.667 kb on - strand, within CA264_02630at 609.740 kb on + strand, within CA264_02630at 609.740 kb on + strand, within CA264_02630at 609.864 kb on - strand, within CA264_02630at 609.915 kb on + strand, within CA264_02630at 609.915 kb on + strand, within CA264_02630at 609.987 kb on + strandat 609.987 kb on + strandat 609.987 kb on + strandat 610.021 kb on - strandat 610.034 kb on - strandat 610.040 kb on - strandat 610.173 kb on + strand, within CA264_02635at 610.173 kb on + strand, within CA264_02635at 610.173 kb on + strand, within CA264_02635at 610.173 kb on + strand, within CA264_02635at 610.173 kb on + strand, within CA264_02635at 610.268 kb on + strand, within CA264_02635at 610.321 kb on - strand, within CA264_02635at 610.423 kb on + strand, within CA264_02635at 610.424 kb on - strand, within CA264_02635at 610.549 kb on - strand, within CA264_02635at 610.786 kb on - strandat 610.786 kb on - strandat 610.787 kb on + strandat 610.787 kb on + strandat 610.787 kb on + strandat 610.788 kb on - strandat 610.789 kb on + strandat 610.789 kb on + strandat 610.790 kb on - strandat 610.790 kb on - strandat 610.793 kb on + strandat 610.848 kb on + strandat 610.862 kb on + strandat 610.863 kb on - strandat 610.917 kb on - strandat 610.925 kb on + strandat 610.926 kb on - strandat 610.926 kb on - strandat 610.955 kb on + strandat 610.955 kb on + strandat 610.956 kb on - strandat 610.970 kb on + strandat 610.970 kb on + strandat 610.970 kb on + strandat 610.970 kb on + strandat 610.970 kb on + strandat 610.970 kb on + strandat 610.971 kb on - strandat 610.971 kb on - strandat 610.971 kb on - strandat 610.986 kb on + strandat 610.986 kb on + strandat 611.001 kb on - strandat 611.024 kb on + strand, within CA264_02640at 611.024 kb on + strand, within CA264_02640at 611.025 kb on - strand, within CA264_02640at 611.029 kb on - strand, within CA264_02640at 611.030 kb on + strand, within CA264_02640at 611.030 kb on + strand, within CA264_02640at 611.030 kb on + strand, within CA264_02640at 611.110 kb on - strand, within CA264_02640at 611.213 kb on + strand, within CA264_02640at 611.213 kb on + strand, within CA264_02640at 611.235 kb on - strand, within CA264_02640at 611.280 kb on - strand, within CA264_02640at 611.306 kb on + strand, within CA264_02640at 611.338 kb on - strand, within CA264_02640at 611.466 kb on - strand, within CA264_02640at 611.474 kb on + strand, within CA264_02640at 611.539 kb on + strand, within CA264_02640at 611.600 kb on + strand, within CA264_02640at 611.613 kb on - strand, within CA264_02640at 611.617 kb on - strand, within CA264_02640at 611.639 kb on + strand, within CA264_02640at 611.639 kb on + strand, within CA264_02640at 611.640 kb on - strand, within CA264_02640at 611.640 kb on - strand, within CA264_02640

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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609,108 + CA264_02625 0.86 -0.3
609,152 + CA264_02625 0.89 -0.4
609,153 - CA264_02625 0.89 -0.9
609,153 - CA264_02625 0.89 -0.6
609,153 - CA264_02625 0.89 -0.2
609,153 - CA264_02625 0.89 -0.6
609,219 - -0.8
609,224 - +0.6
609,230 + -0.7
609,252 + +0.4
609,253 - -0.4
609,328 + -1.3
609,376 + -0.6
609,377 - +0.2
609,377 - -0.5
609,377 - +0.0
609,379 - +0.1
609,379 - -0.7
609,379 - +1.0
609,619 - CA264_02630 0.37 -1.4
609,635 + CA264_02630 0.40 +0.8
609,635 + CA264_02630 0.40 -0.4
609,667 - CA264_02630 0.45 +0.8
609,740 + CA264_02630 0.56 +2.2
609,740 + CA264_02630 0.56 -1.1
609,864 - CA264_02630 0.75 +0.2
609,915 + CA264_02630 0.83 +1.2
609,915 + CA264_02630 0.83 -0.2
609,987 + -0.2
609,987 + -0.3
609,987 + -0.2
610,021 - -0.1
610,034 - -0.0
610,040 - +0.6
610,173 + CA264_02635 0.13 -0.7
610,173 + CA264_02635 0.13 +0.2
610,173 + CA264_02635 0.13 +0.8
610,173 + CA264_02635 0.13 -0.2
610,173 + CA264_02635 0.13 -0.3
610,268 + CA264_02635 0.29 +0.4
610,321 - CA264_02635 0.38 +0.5
610,423 + CA264_02635 0.54 -0.9
610,424 - CA264_02635 0.55 -0.9
610,549 - CA264_02635 0.75 +0.1
610,786 - +1.4
610,786 - -0.7
610,787 + +0.6
610,787 + -0.4
610,787 + -0.6
610,788 - +0.2
610,789 + -0.9
610,789 + -0.6
610,790 - -0.3
610,790 - -0.3
610,793 + -0.9
610,848 + -0.1
610,862 + -0.5
610,863 - +0.6
610,917 - -0.2
610,925 + -0.3
610,926 - +0.2
610,926 - +0.1
610,955 + -0.3
610,955 + +0.7
610,956 - +0.8
610,970 + +0.0
610,970 + +0.7
610,970 + +0.4
610,970 + +0.0
610,970 + +0.6
610,970 + -0.6
610,971 - -0.6
610,971 - -0.4
610,971 - +0.6
610,986 + -1.1
610,986 + -1.3
611,001 - +0.1
611,024 + CA264_02640 0.11 +0.0
611,024 + CA264_02640 0.11 +0.1
611,025 - CA264_02640 0.11 -0.7
611,029 - CA264_02640 0.12 -0.2
611,030 + CA264_02640 0.12 +0.3
611,030 + CA264_02640 0.12 +0.1
611,030 + CA264_02640 0.12 -0.6
611,110 - CA264_02640 0.20 -0.5
611,213 + CA264_02640 0.31 -0.4
611,213 + CA264_02640 0.31 +1.0
611,235 - CA264_02640 0.33 -0.8
611,280 - CA264_02640 0.38 -1.5
611,306 + CA264_02640 0.40 -0.2
611,338 - CA264_02640 0.44 -1.5
611,466 - CA264_02640 0.57 -0.2
611,474 + CA264_02640 0.58 +0.8
611,539 + CA264_02640 0.64 +0.1
611,600 + CA264_02640 0.70 +1.5
611,613 - CA264_02640 0.72 -0.8
611,617 - CA264_02640 0.72 -0.0
611,639 + CA264_02640 0.74 +0.6
611,639 + CA264_02640 0.74 +0.1
611,640 - CA264_02640 0.75 -0.2
611,640 - CA264_02640 0.75 -0.2

Or see this region's nucleotide sequence