Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02625 and CA264_02630 are separated by 50 nucleotides CA264_02630 and CA264_02635 are separated by 69 nucleotides CA264_02635 and CA264_02640 are separated by 214 nucleotides
CA264_02625: CA264_02625 - hypothetical protein, at 607,759 to 609,330
_02625
CA264_02630: CA264_02630 - carbonic anhydrase, at 609,381 to 610,022
_02630
CA264_02635: CA264_02635 - hypothetical protein, at 610,092 to 610,700
_02635
CA264_02640: CA264_02640 - SWFGD domain-containing protein, at 610,915 to 611,886
_02640
Position (kb) 609
610
611 Strain fitness (log2 ratio) -1
0
1
2 at 608.431 kb on + strand, within CA264_02625 at 608.431 kb on + strand, within CA264_02625 at 608.432 kb on - strand, within CA264_02625 at 608.468 kb on + strand, within CA264_02625 at 608.554 kb on + strand, within CA264_02625 at 608.554 kb on + strand, within CA264_02625 at 608.554 kb on + strand, within CA264_02625 at 608.561 kb on + strand, within CA264_02625 at 608.561 kb on + strand, within CA264_02625 at 608.562 kb on - strand, within CA264_02625 at 608.568 kb on + strand, within CA264_02625 at 608.682 kb on - strand, within CA264_02625 at 608.685 kb on + strand, within CA264_02625 at 608.686 kb on - strand, within CA264_02625 at 608.686 kb on - strand, within CA264_02625 at 608.686 kb on - strand, within CA264_02625 at 608.729 kb on + strand, within CA264_02625 at 608.729 kb on + strand, within CA264_02625 at 608.835 kb on - strand, within CA264_02625 at 608.911 kb on + strand, within CA264_02625 at 608.975 kb on + strand, within CA264_02625 at 609.049 kb on + strand, within CA264_02625 at 609.049 kb on + strand, within CA264_02625 at 609.050 kb on - strand, within CA264_02625 at 609.062 kb on - strand, within CA264_02625 at 609.067 kb on + strand, within CA264_02625 at 609.108 kb on + strand, within CA264_02625 at 609.152 kb on + strand, within CA264_02625 at 609.153 kb on - strand, within CA264_02625 at 609.153 kb on - strand, within CA264_02625 at 609.153 kb on - strand, within CA264_02625 at 609.153 kb on - strand, within CA264_02625 at 609.219 kb on - strand at 609.224 kb on - strand at 609.230 kb on + strand at 609.252 kb on + strand at 609.253 kb on - strand at 609.328 kb on + strand at 609.376 kb on + strand at 609.377 kb on - strand at 609.377 kb on - strand at 609.377 kb on - strand at 609.379 kb on - strand at 609.379 kb on - strand at 609.379 kb on - strand at 609.619 kb on - strand, within CA264_02630 at 609.635 kb on + strand, within CA264_02630 at 609.635 kb on + strand, within CA264_02630 at 609.667 kb on - strand, within CA264_02630 at 609.740 kb on + strand, within CA264_02630 at 609.740 kb on + strand, within CA264_02630 at 609.864 kb on - strand, within CA264_02630 at 609.915 kb on + strand, within CA264_02630 at 609.915 kb on + strand, within CA264_02630 at 609.987 kb on + strand at 609.987 kb on + strand at 609.987 kb on + strand at 610.021 kb on - strand at 610.034 kb on - strand at 610.040 kb on - strand at 610.173 kb on + strand, within CA264_02635 at 610.173 kb on + strand, within CA264_02635 at 610.173 kb on + strand, within CA264_02635 at 610.173 kb on + strand, within CA264_02635 at 610.173 kb on + strand, within CA264_02635 at 610.268 kb on + strand, within CA264_02635 at 610.321 kb on - strand, within CA264_02635 at 610.423 kb on + strand, within CA264_02635 at 610.424 kb on - strand, within CA264_02635 at 610.549 kb on - strand, within CA264_02635 at 610.786 kb on - strand at 610.786 kb on - strand at 610.787 kb on + strand at 610.787 kb on + strand at 610.787 kb on + strand at 610.788 kb on - strand at 610.789 kb on + strand at 610.789 kb on + strand at 610.790 kb on - strand at 610.790 kb on - strand at 610.793 kb on + strand at 610.848 kb on + strand at 610.862 kb on + strand at 610.863 kb on - strand at 610.917 kb on - strand at 610.925 kb on + strand at 610.926 kb on - strand at 610.926 kb on - strand at 610.955 kb on + strand at 610.955 kb on + strand at 610.956 kb on - strand at 610.970 kb on + strand at 610.970 kb on + strand at 610.970 kb on + strand at 610.970 kb on + strand at 610.970 kb on + strand at 610.970 kb on + strand at 610.971 kb on - strand at 610.971 kb on - strand at 610.971 kb on - strand at 610.986 kb on + strand at 610.986 kb on + strand at 611.001 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 608,431 + CA264_02625 0.43 -1.0 608,431 + CA264_02625 0.43 -0.3 608,432 - CA264_02625 0.43 +0.1 608,468 + CA264_02625 0.45 -0.9 608,554 + CA264_02625 0.51 +0.7 608,554 + CA264_02625 0.51 -0.6 608,554 + CA264_02625 0.51 -0.4 608,561 + CA264_02625 0.51 +0.0 608,561 + CA264_02625 0.51 +1.4 608,562 - CA264_02625 0.51 +0.0 608,568 + CA264_02625 0.51 -0.0 608,682 - CA264_02625 0.59 +0.3 608,685 + CA264_02625 0.59 -0.4 608,686 - CA264_02625 0.59 -0.5 608,686 - CA264_02625 0.59 -0.5 608,686 - CA264_02625 0.59 +0.5 608,729 + CA264_02625 0.62 -0.7 608,729 + CA264_02625 0.62 -1.3 608,835 - CA264_02625 0.68 +0.9 608,911 + CA264_02625 0.73 -0.3 608,975 + CA264_02625 0.77 -0.2 609,049 + CA264_02625 0.82 +0.0 609,049 + CA264_02625 0.82 -1.1 609,050 - CA264_02625 0.82 +0.6 609,062 - CA264_02625 0.83 -0.2 609,067 + CA264_02625 0.83 +0.2 609,108 + CA264_02625 0.86 -0.3 609,152 + CA264_02625 0.89 -0.4 609,153 - CA264_02625 0.89 -0.9 609,153 - CA264_02625 0.89 -0.6 609,153 - CA264_02625 0.89 -0.2 609,153 - CA264_02625 0.89 -0.6 609,219 - -0.8 609,224 - +0.6 609,230 + -0.7 609,252 + +0.4 609,253 - -0.4 609,328 + -1.3 609,376 + -0.6 609,377 - +0.2 609,377 - -0.5 609,377 - +0.0 609,379 - +0.1 609,379 - -0.7 609,379 - +1.0 609,619 - CA264_02630 0.37 -1.4 609,635 + CA264_02630 0.40 +0.8 609,635 + CA264_02630 0.40 -0.4 609,667 - CA264_02630 0.45 +0.8 609,740 + CA264_02630 0.56 +2.2 609,740 + CA264_02630 0.56 -1.1 609,864 - CA264_02630 0.75 +0.2 609,915 + CA264_02630 0.83 +1.2 609,915 + CA264_02630 0.83 -0.2 609,987 + -0.2 609,987 + -0.3 609,987 + -0.2 610,021 - -0.1 610,034 - -0.0 610,040 - +0.6 610,173 + CA264_02635 0.13 -0.7 610,173 + CA264_02635 0.13 +0.2 610,173 + CA264_02635 0.13 +0.8 610,173 + CA264_02635 0.13 -0.2 610,173 + CA264_02635 0.13 -0.3 610,268 + CA264_02635 0.29 +0.4 610,321 - CA264_02635 0.38 +0.5 610,423 + CA264_02635 0.54 -0.9 610,424 - CA264_02635 0.55 -0.9 610,549 - CA264_02635 0.75 +0.1 610,786 - +1.4 610,786 - -0.7 610,787 + +0.6 610,787 + -0.4 610,787 + -0.6 610,788 - +0.2 610,789 + -0.9 610,789 + -0.6 610,790 - -0.3 610,790 - -0.3 610,793 + -0.9 610,848 + -0.1 610,862 + -0.5 610,863 - +0.6 610,917 - -0.2 610,925 + -0.3 610,926 - +0.2 610,926 - +0.1 610,955 + -0.3 610,955 + +0.7 610,956 - +0.8 610,970 + +0.0 610,970 + +0.7 610,970 + +0.4 610,970 + +0.0 610,970 + +0.6 610,970 + -0.6 610,971 - -0.6 610,971 - -0.4 610,971 - +0.6 610,986 + -1.1 610,986 + -1.3 611,001 - +0.1
Or see this region's nucleotide sequence