Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02455 and CA264_02460 overlap by 91 nucleotides CA264_02460 and CA264_02465 overlap by 4 nucleotides CA264_02465 and CA264_02470 are separated by 99 nucleotides
CA264_02455: CA264_02455 - hypothetical protein, at 572,302 to 572,970
_02455
CA264_02460: CA264_02460 - sugar dehydrogenase, at 572,880 to 573,689
_02460
CA264_02465: CA264_02465 - hypothetical protein, at 573,686 to 573,901
_02465
CA264_02470: CA264_02470 - alkaline phosphatase family protein, at 574,001 to 575,404
_02470
Position (kb) 573
574 Strain fitness (log2 ratio) -2
-1
0
1 at 572.723 kb on - strand, within CA264_02455 at 572.723 kb on - strand, within CA264_02455 at 572.739 kb on + strand, within CA264_02455 at 572.739 kb on + strand, within CA264_02455 at 572.740 kb on - strand, within CA264_02455 at 572.746 kb on - strand, within CA264_02455 at 572.770 kb on + strand, within CA264_02455 at 572.833 kb on + strand, within CA264_02455 at 572.855 kb on - strand, within CA264_02455 at 572.882 kb on - strand at 572.923 kb on + strand at 572.924 kb on - strand at 572.940 kb on + strand at 572.945 kb on - strand at 572.945 kb on - strand at 572.945 kb on - strand at 572.976 kb on + strand, within CA264_02460 at 573.086 kb on + strand, within CA264_02460 at 573.407 kb on + strand, within CA264_02460 at 573.450 kb on + strand, within CA264_02460 at 573.451 kb on - strand, within CA264_02460 at 573.565 kb on + strand, within CA264_02460 at 573.682 kb on + strand at 573.783 kb on + strand, within CA264_02465 at 573.784 kb on - strand, within CA264_02465 at 573.784 kb on - strand, within CA264_02465 at 573.876 kb on - strand, within CA264_02465 at 573.881 kb on - strand at 573.896 kb on + strand at 573.923 kb on + strand at 573.924 kb on - strand at 573.939 kb on + strand at 573.939 kb on + strand at 573.966 kb on - strand at 573.995 kb on + strand at 573.995 kb on + strand at 574.004 kb on + strand at 574.004 kb on + strand at 574.004 kb on + strand at 574.004 kb on + strand at 574.004 kb on + strand at 574.004 kb on + strand at 574.037 kb on + strand at 574.053 kb on - strand at 574.057 kb on + strand at 574.057 kb on + strand at 574.058 kb on - strand at 574.058 kb on - strand at 574.060 kb on + strand at 574.060 kb on + strand at 574.061 kb on - strand at 574.061 kb on - strand at 574.106 kb on - strand at 574.106 kb on - strand at 574.108 kb on - strand at 574.139 kb on - strand at 574.193 kb on - strand, within CA264_02470 at 574.195 kb on + strand, within CA264_02470 at 574.313 kb on - strand, within CA264_02470 at 574.322 kb on + strand, within CA264_02470 at 574.372 kb on - strand, within CA264_02470 at 574.375 kb on + strand, within CA264_02470 at 574.437 kb on + strand, within CA264_02470 at 574.533 kb on + strand, within CA264_02470 at 574.533 kb on + strand, within CA264_02470 at 574.534 kb on - strand, within CA264_02470 at 574.681 kb on + strand, within CA264_02470 at 574.757 kb on + strand, within CA264_02470 at 574.815 kb on + strand, within CA264_02470 at 574.857 kb on + strand, within CA264_02470
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 572,723 - CA264_02455 0.63 -0.1 572,723 - CA264_02455 0.63 -0.3 572,739 + CA264_02455 0.65 +0.2 572,739 + CA264_02455 0.65 -0.2 572,740 - CA264_02455 0.65 -2.2 572,746 - CA264_02455 0.66 -0.0 572,770 + CA264_02455 0.70 -1.1 572,833 + CA264_02455 0.79 +0.4 572,855 - CA264_02455 0.83 -0.8 572,882 - +0.2 572,923 + -0.2 572,924 - -0.2 572,940 + -0.1 572,945 - +0.6 572,945 - -0.4 572,945 - +0.1 572,976 + CA264_02460 0.12 -2.1 573,086 + CA264_02460 0.25 -0.4 573,407 + CA264_02460 0.65 -1.1 573,450 + CA264_02460 0.70 -0.3 573,451 - CA264_02460 0.70 +0.4 573,565 + CA264_02460 0.85 -0.4 573,682 + -1.1 573,783 + CA264_02465 0.45 -0.6 573,784 - CA264_02465 0.45 +0.2 573,784 - CA264_02465 0.45 +0.3 573,876 - CA264_02465 0.88 +0.2 573,881 - +0.3 573,896 + -0.2 573,923 + -0.5 573,924 - -0.7 573,939 + -0.4 573,939 + +0.2 573,966 - -0.4 573,995 + +0.1 573,995 + -0.8 574,004 + +0.1 574,004 + -1.2 574,004 + +0.3 574,004 + +1.0 574,004 + +0.8 574,004 + -1.1 574,037 + +0.0 574,053 - +0.1 574,057 + +0.1 574,057 + +0.8 574,058 - -0.5 574,058 - +0.2 574,060 + -0.5 574,060 + -0.1 574,061 - -0.0 574,061 - -0.0 574,106 - +0.1 574,106 - -0.4 574,108 - +0.8 574,139 - -0.8 574,193 - CA264_02470 0.14 +0.2 574,195 + CA264_02470 0.14 -0.4 574,313 - CA264_02470 0.22 -0.7 574,322 + CA264_02470 0.23 -0.5 574,372 - CA264_02470 0.26 +0.8 574,375 + CA264_02470 0.27 -2.2 574,437 + CA264_02470 0.31 -0.5 574,533 + CA264_02470 0.38 +0.2 574,533 + CA264_02470 0.38 +0.4 574,534 - CA264_02470 0.38 +0.2 574,681 + CA264_02470 0.48 +0.6 574,757 + CA264_02470 0.54 -0.9 574,815 + CA264_02470 0.58 +0.5 574,857 + CA264_02470 0.61 -0.3
Or see this region's nucleotide sequence