Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02445

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02440 and CA264_02445 are separated by 22 nucleotidesCA264_02445 and CA264_02450 are separated by 158 nucleotidesCA264_02450 and CA264_02455 are separated by 65 nucleotides CA264_02440: CA264_02440 - vitamin K epoxide reductase, at 568,994 to 570,556 _02440 CA264_02445: CA264_02445 - trehalase-like protein, at 570,579 to 571,853 _02445 CA264_02450: CA264_02450 - hypothetical protein, at 572,012 to 572,236 _02450 CA264_02455: CA264_02455 - hypothetical protein, at 572,302 to 572,970 _02455 Position (kb) 570 571 572Strain fitness (log2 ratio) -2 -1 0 1 2at 569.615 kb on + strand, within CA264_02440at 569.615 kb on + strand, within CA264_02440at 569.616 kb on - strand, within CA264_02440at 569.711 kb on + strand, within CA264_02440at 570.040 kb on - strand, within CA264_02440at 570.052 kb on - strand, within CA264_02440at 570.474 kb on + strandat 570.474 kb on + strandat 570.475 kb on - strandat 570.528 kb on - strandat 570.634 kb on + strandat 570.635 kb on - strandat 570.691 kb on - strandat 570.731 kb on + strand, within CA264_02445at 570.731 kb on + strand, within CA264_02445at 570.732 kb on - strand, within CA264_02445at 570.732 kb on - strand, within CA264_02445at 570.734 kb on - strand, within CA264_02445at 570.821 kb on + strand, within CA264_02445at 570.822 kb on - strand, within CA264_02445at 570.822 kb on - strand, within CA264_02445at 570.824 kb on + strand, within CA264_02445at 570.824 kb on + strand, within CA264_02445at 570.824 kb on + strand, within CA264_02445at 570.824 kb on + strand, within CA264_02445at 570.825 kb on - strand, within CA264_02445at 570.825 kb on - strand, within CA264_02445at 570.825 kb on - strand, within CA264_02445at 570.988 kb on - strand, within CA264_02445at 571.023 kb on + strand, within CA264_02445at 571.024 kb on - strand, within CA264_02445at 571.074 kb on - strand, within CA264_02445at 571.074 kb on - strand, within CA264_02445at 571.076 kb on + strand, within CA264_02445at 571.077 kb on - strand, within CA264_02445at 571.077 kb on - strand, within CA264_02445at 571.211 kb on + strand, within CA264_02445at 571.211 kb on - strand, within CA264_02445at 571.212 kb on - strand, within CA264_02445at 571.258 kb on + strand, within CA264_02445at 571.275 kb on + strand, within CA264_02445at 571.275 kb on + strand, within CA264_02445at 571.276 kb on - strand, within CA264_02445at 571.341 kb on + strand, within CA264_02445at 571.383 kb on + strand, within CA264_02445at 571.389 kb on + strand, within CA264_02445at 571.389 kb on + strand, within CA264_02445at 571.390 kb on - strand, within CA264_02445at 571.390 kb on - strand, within CA264_02445at 571.390 kb on - strand, within CA264_02445at 571.390 kb on - strand, within CA264_02445at 571.413 kb on + strand, within CA264_02445at 571.464 kb on - strand, within CA264_02445at 571.600 kb on - strand, within CA264_02445at 571.649 kb on + strand, within CA264_02445at 571.658 kb on + strand, within CA264_02445at 571.658 kb on + strand, within CA264_02445at 571.658 kb on + strand, within CA264_02445at 571.721 kb on + strand, within CA264_02445at 571.722 kb on - strand, within CA264_02445at 571.722 kb on - strand, within CA264_02445at 571.758 kb on + strandat 571.758 kb on + strandat 571.759 kb on - strandat 571.759 kb on - strandat 571.759 kb on - strandat 571.770 kb on - strandat 571.851 kb on + strandat 571.919 kb on + strandat 571.920 kb on - strandat 571.930 kb on - strandat 571.940 kb on - strandat 571.940 kb on - strandat 571.940 kb on - strandat 571.977 kb on + strandat 572.053 kb on - strand, within CA264_02450at 572.053 kb on - strand, within CA264_02450at 572.053 kb on - strand, within CA264_02450at 572.056 kb on - strand, within CA264_02450at 572.071 kb on + strand, within CA264_02450at 572.071 kb on + strand, within CA264_02450at 572.076 kb on + strand, within CA264_02450at 572.078 kb on + strand, within CA264_02450at 572.102 kb on + strand, within CA264_02450at 572.199 kb on + strandat 572.219 kb on + strandat 572.219 kb on + strandat 572.222 kb on + strandat 572.222 kb on + strandat 572.246 kb on - strandat 572.248 kb on - strandat 572.259 kb on - strandat 572.263 kb on - strandat 572.321 kb on + strandat 572.321 kb on + strandat 572.321 kb on + strandat 572.321 kb on + strandat 572.322 kb on - strandat 572.367 kb on + strandat 572.408 kb on + strand, within CA264_02455at 572.409 kb on - strand, within CA264_02455at 572.422 kb on - strand, within CA264_02455at 572.499 kb on + strand, within CA264_02455at 572.535 kb on - strand, within CA264_02455at 572.535 kb on - strand, within CA264_02455at 572.592 kb on + strand, within CA264_02455at 572.614 kb on - strand, within CA264_02455at 572.617 kb on + strand, within CA264_02455at 572.618 kb on - strand, within CA264_02455at 572.618 kb on - strand, within CA264_02455at 572.618 kb on - strand, within CA264_02455at 572.632 kb on - strand, within CA264_02455at 572.632 kb on - strand, within CA264_02455at 572.642 kb on - strand, within CA264_02455at 572.723 kb on - strand, within CA264_02455at 572.723 kb on - strand, within CA264_02455at 572.739 kb on + strand, within CA264_02455at 572.739 kb on + strand, within CA264_02455at 572.740 kb on - strand, within CA264_02455at 572.746 kb on - strand, within CA264_02455at 572.770 kb on + strand, within CA264_02455at 572.833 kb on + strand, within CA264_02455

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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569,615 + CA264_02440 0.40 -0.5
569,615 + CA264_02440 0.40 -1.3
569,616 - CA264_02440 0.40 -0.7
569,711 + CA264_02440 0.46 +0.6
570,040 - CA264_02440 0.67 +0.6
570,052 - CA264_02440 0.68 -0.1
570,474 + +0.3
570,474 + +0.8
570,475 - -0.4
570,528 - +0.8
570,634 + +0.7
570,635 - -1.0
570,691 - -0.2
570,731 + CA264_02445 0.12 +0.1
570,731 + CA264_02445 0.12 -0.1
570,732 - CA264_02445 0.12 +0.5
570,732 - CA264_02445 0.12 +0.1
570,734 - CA264_02445 0.12 +0.3
570,821 + CA264_02445 0.19 -1.2
570,822 - CA264_02445 0.19 +2.2
570,822 - CA264_02445 0.19 -1.5
570,824 + CA264_02445 0.19 +0.3
570,824 + CA264_02445 0.19 +0.0
570,824 + CA264_02445 0.19 +0.3
570,824 + CA264_02445 0.19 -0.1
570,825 - CA264_02445 0.19 -1.1
570,825 - CA264_02445 0.19 +0.2
570,825 - CA264_02445 0.19 +0.5
570,988 - CA264_02445 0.32 +0.1
571,023 + CA264_02445 0.35 -0.4
571,024 - CA264_02445 0.35 -0.8
571,074 - CA264_02445 0.39 -0.2
571,074 - CA264_02445 0.39 -0.4
571,076 + CA264_02445 0.39 -0.1
571,077 - CA264_02445 0.39 +0.2
571,077 - CA264_02445 0.39 +0.8
571,211 + CA264_02445 0.50 -0.1
571,211 - CA264_02445 0.50 -0.6
571,212 - CA264_02445 0.50 +0.7
571,258 + CA264_02445 0.53 +0.1
571,275 + CA264_02445 0.55 +0.2
571,275 + CA264_02445 0.55 -0.1
571,276 - CA264_02445 0.55 +1.1
571,341 + CA264_02445 0.60 -0.9
571,383 + CA264_02445 0.63 +0.6
571,389 + CA264_02445 0.64 +0.8
571,389 + CA264_02445 0.64 -0.7
571,390 - CA264_02445 0.64 -0.0
571,390 - CA264_02445 0.64 -0.8
571,390 - CA264_02445 0.64 -0.5
571,390 - CA264_02445 0.64 -0.2
571,413 + CA264_02445 0.65 -0.6
571,464 - CA264_02445 0.69 -0.3
571,600 - CA264_02445 0.80 +0.9
571,649 + CA264_02445 0.84 -1.4
571,658 + CA264_02445 0.85 -0.6
571,658 + CA264_02445 0.85 -0.7
571,658 + CA264_02445 0.85 -0.4
571,721 + CA264_02445 0.90 -0.2
571,722 - CA264_02445 0.90 +0.5
571,722 - CA264_02445 0.90 +0.4
571,758 + -0.0
571,758 + -0.4
571,759 - +1.7
571,759 - -0.8
571,759 - -0.4
571,770 - -0.1
571,851 + +0.4
571,919 + -0.1
571,920 - -0.5
571,930 - -0.2
571,940 - -0.2
571,940 - -0.5
571,940 - -0.2
571,977 + +0.5
572,053 - CA264_02450 0.18 -0.0
572,053 - CA264_02450 0.18 +0.7
572,053 - CA264_02450 0.18 -0.6
572,056 - CA264_02450 0.20 -0.3
572,071 + CA264_02450 0.26 +0.7
572,071 + CA264_02450 0.26 -0.4
572,076 + CA264_02450 0.28 -0.8
572,078 + CA264_02450 0.29 +1.0
572,102 + CA264_02450 0.40 +0.7
572,199 + +0.1
572,219 + -0.3
572,219 + -0.8
572,222 + +1.7
572,222 + +0.1
572,246 - +0.3
572,248 - -0.7
572,259 - +0.2
572,263 - -0.2
572,321 + -1.4
572,321 + +0.1
572,321 + +0.4
572,321 + -0.9
572,322 - -0.5
572,367 + -0.1
572,408 + CA264_02455 0.16 +0.1
572,409 - CA264_02455 0.16 -0.1
572,422 - CA264_02455 0.18 +0.4
572,499 + CA264_02455 0.29 -0.6
572,535 - CA264_02455 0.35 +0.3
572,535 - CA264_02455 0.35 -1.1
572,592 + CA264_02455 0.43 +0.1
572,614 - CA264_02455 0.47 +0.5
572,617 + CA264_02455 0.47 -1.1
572,618 - CA264_02455 0.47 -1.4
572,618 - CA264_02455 0.47 -0.1
572,618 - CA264_02455 0.47 -0.4
572,632 - CA264_02455 0.49 -0.5
572,632 - CA264_02455 0.49 +0.6
572,642 - CA264_02455 0.51 +0.4
572,723 - CA264_02455 0.63 -0.1
572,723 - CA264_02455 0.63 -0.3
572,739 + CA264_02455 0.65 +0.2
572,739 + CA264_02455 0.65 -0.2
572,740 - CA264_02455 0.65 -2.2
572,746 - CA264_02455 0.66 -0.0
572,770 + CA264_02455 0.70 -1.1
572,833 + CA264_02455 0.79 +0.4

Or see this region's nucleotide sequence