Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02175 and CA264_02180 are separated by 313 nucleotides CA264_02180 and CA264_02185 are separated by 156 nucleotides CA264_02185 and CA264_02190 are separated by 89 nucleotides
CA264_02175: CA264_02175 - acyl-CoA desaturase, at 501,120 to 502,232
_02175
CA264_02180: CA264_02180 - response regulator, at 502,546 to 502,914
_02180
CA264_02185: CA264_02185 - GNAT family N-acetyltransferase, at 503,071 to 503,595
_02185
CA264_02190: CA264_02190 - hypothetical protein, at 503,685 to 504,674
_02190
Position (kb) 502
503 Strain fitness (log2 ratio) -1
0
1 at 501.594 kb on + strand, within CA264_02175 at 501.594 kb on + strand, within CA264_02175 at 501.595 kb on - strand, within CA264_02175 at 501.616 kb on - strand, within CA264_02175 at 501.630 kb on + strand, within CA264_02175 at 501.649 kb on - strand, within CA264_02175 at 501.678 kb on + strand, within CA264_02175 at 501.704 kb on - strand, within CA264_02175 at 501.704 kb on - strand, within CA264_02175 at 501.768 kb on + strand, within CA264_02175 at 501.769 kb on - strand, within CA264_02175 at 501.769 kb on - strand, within CA264_02175 at 501.974 kb on + strand, within CA264_02175 at 502.017 kb on + strand, within CA264_02175 at 502.129 kb on + strand at 502.129 kb on + strand at 502.129 kb on + strand at 502.130 kb on - strand at 502.130 kb on - strand at 502.130 kb on - strand at 502.130 kb on - strand at 502.135 kb on - strand at 502.135 kb on - strand at 502.135 kb on - strand at 502.135 kb on - strand at 502.242 kb on + strand at 502.243 kb on - strand at 502.245 kb on - strand at 502.245 kb on - strand at 502.250 kb on - strand at 502.250 kb on - strand at 502.463 kb on - strand at 502.471 kb on + strand at 502.472 kb on - strand at 502.472 kb on - strand at 502.474 kb on + strand at 502.474 kb on + strand at 502.474 kb on + strand at 502.474 kb on + strand at 502.475 kb on - strand at 502.476 kb on + strand at 502.476 kb on + strand at 502.476 kb on + strand at 502.476 kb on + strand at 502.476 kb on + strand at 502.476 kb on + strand at 502.477 kb on - strand at 502.477 kb on - strand at 502.477 kb on - strand at 502.534 kb on - strand at 502.543 kb on + strand at 502.544 kb on - strand at 502.544 kb on - strand at 502.544 kb on - strand at 502.572 kb on + strand at 502.616 kb on + strand, within CA264_02180 at 502.645 kb on - strand, within CA264_02180 at 502.831 kb on + strand, within CA264_02180 at 502.857 kb on - strand, within CA264_02180 at 502.889 kb on + strand at 502.889 kb on + strand at 502.890 kb on - strand at 502.913 kb on - strand at 502.932 kb on + strand at 502.933 kb on - strand at 502.967 kb on + strand at 503.031 kb on - strand at 503.031 kb on - strand at 503.042 kb on + strand at 503.043 kb on - strand at 503.155 kb on + strand, within CA264_02185 at 503.156 kb on - strand, within CA264_02185 at 503.189 kb on - strand, within CA264_02185 at 503.263 kb on + strand, within CA264_02185 at 503.304 kb on - strand, within CA264_02185 at 503.362 kb on + strand, within CA264_02185 at 503.426 kb on - strand, within CA264_02185 at 503.460 kb on - strand, within CA264_02185 at 503.658 kb on - strand at 503.672 kb on - strand at 503.680 kb on - strand at 503.712 kb on + strand at 503.712 kb on + strand at 503.713 kb on - strand at 503.713 kb on - strand at 503.713 kb on - strand at 503.713 kb on - strand at 503.713 kb on - strand at 503.717 kb on + strand at 503.718 kb on - strand at 503.719 kb on + strand at 503.719 kb on + strand at 503.720 kb on - strand at 503.784 kb on - strand, within CA264_02190 at 503.784 kb on - strand, within CA264_02190 at 503.784 kb on - strand, within CA264_02190
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 501,594 + CA264_02175 0.43 -0.5 501,594 + CA264_02175 0.43 -0.2 501,595 - CA264_02175 0.43 -0.2 501,616 - CA264_02175 0.45 +1.4 501,630 + CA264_02175 0.46 -0.1 501,649 - CA264_02175 0.48 -0.3 501,678 + CA264_02175 0.50 -0.3 501,704 - CA264_02175 0.52 -0.1 501,704 - CA264_02175 0.52 -0.4 501,768 + CA264_02175 0.58 -0.1 501,769 - CA264_02175 0.58 +1.0 501,769 - CA264_02175 0.58 -0.3 501,974 + CA264_02175 0.77 -0.2 502,017 + CA264_02175 0.81 +1.2 502,129 + -1.5 502,129 + +0.2 502,129 + +0.8 502,130 - -0.9 502,130 - -0.2 502,130 - -0.1 502,130 - -0.4 502,135 - +0.1 502,135 - +0.4 502,135 - -1.5 502,135 - -1.0 502,242 + -0.0 502,243 - +1.5 502,245 - -0.8 502,245 - +0.6 502,250 - +0.6 502,250 - -0.3 502,463 - -1.1 502,471 + +0.4 502,472 - -0.8 502,472 - -0.3 502,474 + -0.0 502,474 + -1.5 502,474 + +0.0 502,474 + +0.6 502,475 - +0.0 502,476 + -0.5 502,476 + -0.3 502,476 + -0.1 502,476 + +1.1 502,476 + -0.7 502,476 + -1.1 502,477 - -0.5 502,477 - +0.7 502,477 - -0.1 502,534 - -1.7 502,543 + -0.1 502,544 - -1.3 502,544 - -0.5 502,544 - -0.6 502,572 + +0.4 502,616 + CA264_02180 0.19 -0.2 502,645 - CA264_02180 0.27 -0.5 502,831 + CA264_02180 0.77 +1.7 502,857 - CA264_02180 0.84 +1.2 502,889 + -0.2 502,889 + -0.8 502,890 - -0.2 502,913 - +0.4 502,932 + +0.9 502,933 - -0.5 502,967 + -0.0 503,031 - -0.8 503,031 - -0.2 503,042 + -0.6 503,043 - +0.5 503,155 + CA264_02185 0.16 -0.6 503,156 - CA264_02185 0.16 -0.3 503,189 - CA264_02185 0.22 +0.7 503,263 + CA264_02185 0.37 -0.3 503,304 - CA264_02185 0.44 +0.8 503,362 + CA264_02185 0.55 -0.7 503,426 - CA264_02185 0.68 +1.1 503,460 - CA264_02185 0.74 -1.3 503,658 - -1.0 503,672 - -0.1 503,680 - +0.6 503,712 + -1.1 503,712 + -0.7 503,713 - +0.0 503,713 - +0.3 503,713 - -0.2 503,713 - -0.6 503,713 - +0.1 503,717 + -1.6 503,718 - -0.6 503,719 + +0.1 503,719 + -1.6 503,720 - -0.4 503,784 - CA264_02190 0.10 +0.1 503,784 - CA264_02190 0.10 -0.8 503,784 - CA264_02190 0.10 -0.3
Or see this region's nucleotide sequence