Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01830

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01820 and CA264_01825 are separated by 185 nucleotidesCA264_01825 and CA264_01830 are separated by 170 nucleotidesCA264_01830 and CA264_01835 are separated by 126 nucleotidesCA264_01835 and CA264_01840 are separated by 240 nucleotides CA264_01820: CA264_01820 - hypothetical protein, at 427,257 to 427,988 _01820 CA264_01825: CA264_01825 - hypothetical protein, at 428,174 to 428,425 _01825 CA264_01830: CA264_01830 - Bcr/CflA family drug resistance efflux transporter, at 428,596 to 429,846 _01830 CA264_01835: CA264_01835 - GNAT family N-acetyltransferase, at 429,973 to 430,422 _01835 CA264_01840: CA264_01840 - pyridine nucleotide-disulfide oxidoreductase, at 430,663 to 431,721 _01840 Position (kb) 428 429 430Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 427.689 kb on + strand, within CA264_01820at 427.689 kb on + strand, within CA264_01820at 427.690 kb on - strand, within CA264_01820at 427.690 kb on - strand, within CA264_01820at 427.723 kb on + strand, within CA264_01820at 427.814 kb on + strand, within CA264_01820at 427.899 kb on - strand, within CA264_01820at 427.900 kb on + strand, within CA264_01820at 427.900 kb on + strand, within CA264_01820at 427.900 kb on + strand, within CA264_01820at 427.900 kb on + strand, within CA264_01820at 427.942 kb on - strandat 427.960 kb on + strandat 427.984 kb on - strandat 427.984 kb on - strandat 427.999 kb on + strandat 428.000 kb on - strandat 428.050 kb on - strandat 428.234 kb on + strand, within CA264_01825at 428.474 kb on + strandat 428.506 kb on - strandat 428.506 kb on - strandat 428.531 kb on - strandat 428.531 kb on - strandat 428.594 kb on - strandat 428.594 kb on - strandat 428.594 kb on - strandat 428.596 kb on - strandat 428.612 kb on - strandat 428.620 kb on - strandat 428.629 kb on - strandat 428.674 kb on + strandat 428.716 kb on - strandat 428.812 kb on - strand, within CA264_01830at 428.872 kb on - strand, within CA264_01830at 428.907 kb on + strand, within CA264_01830at 428.907 kb on + strand, within CA264_01830at 428.908 kb on - strand, within CA264_01830at 428.910 kb on - strand, within CA264_01830at 428.910 kb on - strand, within CA264_01830at 428.910 kb on - strand, within CA264_01830at 429.006 kb on + strand, within CA264_01830at 429.059 kb on + strand, within CA264_01830at 429.059 kb on + strand, within CA264_01830at 429.090 kb on + strand, within CA264_01830at 429.090 kb on + strand, within CA264_01830at 429.091 kb on - strand, within CA264_01830at 429.095 kb on + strand, within CA264_01830at 429.105 kb on + strand, within CA264_01830at 429.106 kb on - strand, within CA264_01830at 429.242 kb on - strand, within CA264_01830at 429.341 kb on - strand, within CA264_01830at 429.393 kb on + strand, within CA264_01830at 429.393 kb on + strand, within CA264_01830at 429.393 kb on + strand, within CA264_01830at 429.393 kb on + strand, within CA264_01830at 429.415 kb on + strand, within CA264_01830at 429.416 kb on - strand, within CA264_01830at 429.417 kb on + strand, within CA264_01830at 429.418 kb on - strand, within CA264_01830at 429.490 kb on + strand, within CA264_01830at 429.491 kb on - strand, within CA264_01830at 429.494 kb on - strand, within CA264_01830at 429.511 kb on + strand, within CA264_01830at 429.512 kb on - strand, within CA264_01830at 429.696 kb on + strand, within CA264_01830at 429.697 kb on - strand, within CA264_01830at 429.712 kb on - strand, within CA264_01830at 429.735 kb on + strandat 429.811 kb on - strandat 429.825 kb on - strandat 429.844 kb on + strandat 429.845 kb on - strandat 429.876 kb on - strandat 429.992 kb on - strandat 430.034 kb on - strand, within CA264_01835at 430.211 kb on + strand, within CA264_01835at 430.265 kb on + strand, within CA264_01835at 430.266 kb on - strand, within CA264_01835at 430.267 kb on + strand, within CA264_01835at 430.267 kb on + strand, within CA264_01835at 430.383 kb on + strandat 430.493 kb on - strandat 430.523 kb on + strandat 430.567 kb on - strandat 430.632 kb on + strandat 430.632 kb on + strandat 430.633 kb on - strandat 430.664 kb on + strandat 430.675 kb on + strandat 430.675 kb on + strandat 430.675 kb on + strandat 430.676 kb on - strandat 430.734 kb on + strandat 430.769 kb on - strand, within CA264_01840

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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427,689 + CA264_01820 0.59 -1.2
427,689 + CA264_01820 0.59 -1.5
427,690 - CA264_01820 0.59 -0.0
427,690 - CA264_01820 0.59 -1.3
427,723 + CA264_01820 0.64 -1.8
427,814 + CA264_01820 0.76 -1.8
427,899 - CA264_01820 0.88 -0.4
427,900 + CA264_01820 0.88 -0.9
427,900 + CA264_01820 0.88 -1.7
427,900 + CA264_01820 0.88 +0.1
427,900 + CA264_01820 0.88 -1.2
427,942 - -1.3
427,960 + -2.5
427,984 - -1.7
427,984 - -0.6
427,999 + -0.3
428,000 - +0.1
428,050 - -0.3
428,234 + CA264_01825 0.24 -3.1
428,474 + -0.5
428,506 - -1.9
428,506 - +0.6
428,531 - -0.6
428,531 - -1.7
428,594 - +0.0
428,594 - +0.5
428,594 - +1.0
428,596 - -0.2
428,612 - +0.6
428,620 - -0.7
428,629 - -0.2
428,674 + -0.3
428,716 - -2.0
428,812 - CA264_01830 0.17 -0.1
428,872 - CA264_01830 0.22 -0.2
428,907 + CA264_01830 0.25 +0.1
428,907 + CA264_01830 0.25 +0.3
428,908 - CA264_01830 0.25 -0.3
428,910 - CA264_01830 0.25 +1.0
428,910 - CA264_01830 0.25 +1.0
428,910 - CA264_01830 0.25 -0.1
429,006 + CA264_01830 0.33 -0.7
429,059 + CA264_01830 0.37 -0.4
429,059 + CA264_01830 0.37 -0.2
429,090 + CA264_01830 0.39 +2.0
429,090 + CA264_01830 0.39 -0.3
429,091 - CA264_01830 0.40 +0.4
429,095 + CA264_01830 0.40 -0.5
429,105 + CA264_01830 0.41 +0.5
429,106 - CA264_01830 0.41 -0.7
429,242 - CA264_01830 0.52 -0.3
429,341 - CA264_01830 0.60 -0.1
429,393 + CA264_01830 0.64 -0.0
429,393 + CA264_01830 0.64 +0.8
429,393 + CA264_01830 0.64 +0.5
429,393 + CA264_01830 0.64 -1.1
429,415 + CA264_01830 0.65 +0.2
429,416 - CA264_01830 0.66 +0.3
429,417 + CA264_01830 0.66 -0.1
429,418 - CA264_01830 0.66 +1.3
429,490 + CA264_01830 0.71 +1.2
429,491 - CA264_01830 0.72 -0.3
429,494 - CA264_01830 0.72 +0.1
429,511 + CA264_01830 0.73 -0.5
429,512 - CA264_01830 0.73 +0.9
429,696 + CA264_01830 0.88 -0.9
429,697 - CA264_01830 0.88 +0.8
429,712 - CA264_01830 0.89 -0.5
429,735 + -0.5
429,811 - -1.0
429,825 - -0.5
429,844 + +0.1
429,845 - -0.3
429,876 - -0.2
429,992 - -1.0
430,034 - CA264_01835 0.14 +1.0
430,211 + CA264_01835 0.53 -0.9
430,265 + CA264_01835 0.65 -0.7
430,266 - CA264_01835 0.65 +1.5
430,267 + CA264_01835 0.65 -0.6
430,267 + CA264_01835 0.65 +0.1
430,383 + -0.1
430,493 - -0.2
430,523 + -0.3
430,567 - +1.5
430,632 + -1.3
430,632 + +0.4
430,633 - +0.1
430,664 + -0.3
430,675 + +0.5
430,675 + +1.5
430,675 + -0.1
430,676 - -0.4
430,734 + -0.9
430,769 - CA264_01840 0.10 +0.3

Or see this region's nucleotide sequence