Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01390 and CA264_01395 are separated by 0 nucleotides CA264_01395 and CA264_01400 are separated by 73 nucleotides
CA264_01390: CA264_01390 - iron ABC transporter permease, at 331,869 to 332,876
_01390
CA264_01395: CA264_01395 - 6-carboxytetrahydropterin synthase QueD, at 332,877 to 333,299
_01395
CA264_01400: CA264_01400 - lipid-A-disaccharide synthase, at 333,373 to 334,494
_01400
Position (kb) 332
333
334 Strain fitness (log2 ratio) -1
0
1 at 331.884 kb on + strand at 331.891 kb on + strand at 331.891 kb on + strand at 331.969 kb on + strand at 332.048 kb on - strand, within CA264_01390 at 332.048 kb on - strand, within CA264_01390 at 332.107 kb on + strand, within CA264_01390 at 332.108 kb on - strand, within CA264_01390 at 332.112 kb on - strand, within CA264_01390 at 332.112 kb on - strand, within CA264_01390 at 332.131 kb on - strand, within CA264_01390 at 332.333 kb on + strand, within CA264_01390 at 332.353 kb on + strand, within CA264_01390 at 332.353 kb on + strand, within CA264_01390 at 332.354 kb on - strand, within CA264_01390 at 332.354 kb on - strand, within CA264_01390 at 332.354 kb on - strand, within CA264_01390 at 332.527 kb on + strand, within CA264_01390 at 332.527 kb on + strand, within CA264_01390 at 332.528 kb on - strand, within CA264_01390 at 332.528 kb on - strand, within CA264_01390 at 332.660 kb on + strand, within CA264_01390 at 332.741 kb on + strand, within CA264_01390 at 332.807 kb on - strand at 332.836 kb on + strand at 332.874 kb on + strand at 332.954 kb on + strand, within CA264_01395 at 333.003 kb on + strand, within CA264_01395 at 333.004 kb on - strand, within CA264_01395 at 333.116 kb on + strand, within CA264_01395 at 333.259 kb on - strand at 333.281 kb on - strand at 333.285 kb on + strand at 333.298 kb on - strand at 333.321 kb on + strand at 333.334 kb on + strand at 333.344 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 331,884 + +1.3 331,891 + -0.4 331,891 + -0.2 331,969 + +1.6 332,048 - CA264_01390 0.18 -0.3 332,048 - CA264_01390 0.18 +0.7 332,107 + CA264_01390 0.24 -0.7 332,108 - CA264_01390 0.24 -0.1 332,112 - CA264_01390 0.24 +0.1 332,112 - CA264_01390 0.24 -0.5 332,131 - CA264_01390 0.26 +0.4 332,333 + CA264_01390 0.46 -1.2 332,353 + CA264_01390 0.48 +0.8 332,353 + CA264_01390 0.48 -0.6 332,354 - CA264_01390 0.48 -0.1 332,354 - CA264_01390 0.48 -0.1 332,354 - CA264_01390 0.48 +0.0 332,527 + CA264_01390 0.65 +0.1 332,527 + CA264_01390 0.65 -0.1 332,528 - CA264_01390 0.65 -0.4 332,528 - CA264_01390 0.65 -0.2 332,660 + CA264_01390 0.78 +0.9 332,741 + CA264_01390 0.87 -0.8 332,807 - +0.1 332,836 + -0.1 332,874 + +0.3 332,954 + CA264_01395 0.18 -0.7 333,003 + CA264_01395 0.30 +1.0 333,004 - CA264_01395 0.30 -1.0 333,116 + CA264_01395 0.57 +0.5 333,259 - -1.1 333,281 - -1.3 333,285 + +0.3 333,298 - +1.0 333,321 + -0.4 333,334 + -1.1 333,344 + -0.3
Or see this region's nucleotide sequence