Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01370 and CA264_01375 are separated by 168 nucleotides CA264_01375 and CA264_01380 are separated by 27 nucleotides
CA264_01370: CA264_01370 - hypothetical protein, at 325,822 to 329,289
_01370
CA264_01375: CA264_01375 - hypothetical protein, at 329,458 to 329,898
_01375
CA264_01380: CA264_01380 - ADP-L-glycero-D-mannoheptose-6-epimerase, at 329,926 to 330,891
_01380
Position (kb) 329
330 Strain fitness (log2 ratio) -2
-1
0
1
2 at 328.663 kb on + strand, within CA264_01370 at 328.668 kb on + strand, within CA264_01370 at 328.688 kb on - strand, within CA264_01370 at 328.699 kb on + strand, within CA264_01370 at 328.830 kb on + strand, within CA264_01370 at 328.830 kb on + strand, within CA264_01370 at 328.831 kb on - strand, within CA264_01370 at 328.831 kb on - strand, within CA264_01370 at 328.881 kb on - strand, within CA264_01370 at 328.945 kb on - strand at 328.949 kb on - strand at 328.949 kb on - strand at 328.954 kb on + strand at 328.955 kb on - strand at 328.955 kb on - strand at 329.046 kb on - strand at 329.073 kb on + strand at 329.073 kb on + strand at 329.074 kb on - strand at 329.074 kb on - strand at 329.074 kb on - strand at 329.113 kb on + strand at 329.113 kb on + strand at 329.113 kb on + strand at 329.114 kb on - strand at 329.114 kb on - strand at 329.122 kb on + strand at 329.218 kb on + strand at 329.219 kb on - strand at 329.243 kb on + strand at 329.244 kb on - strand at 329.339 kb on + strand at 329.367 kb on + strand at 329.368 kb on - strand at 329.416 kb on + strand at 329.417 kb on - strand at 329.419 kb on + strand at 329.420 kb on - strand at 329.420 kb on - strand at 329.421 kb on + strand at 329.421 kb on + strand at 329.422 kb on - strand at 329.428 kb on - strand at 329.454 kb on + strand at 329.502 kb on - strand, within CA264_01375 at 329.525 kb on + strand, within CA264_01375 at 329.525 kb on + strand, within CA264_01375 at 329.549 kb on - strand, within CA264_01375 at 329.581 kb on - strand, within CA264_01375 at 329.584 kb on + strand, within CA264_01375 at 329.585 kb on - strand, within CA264_01375 at 329.585 kb on - strand, within CA264_01375 at 329.634 kb on + strand, within CA264_01375 at 329.711 kb on + strand, within CA264_01375 at 329.711 kb on + strand, within CA264_01375 at 329.712 kb on - strand, within CA264_01375 at 329.716 kb on + strand, within CA264_01375 at 329.743 kb on - strand, within CA264_01375 at 329.748 kb on - strand, within CA264_01375 at 329.783 kb on - strand, within CA264_01375 at 329.783 kb on - strand, within CA264_01375 at 329.799 kb on + strand, within CA264_01375 at 329.800 kb on - strand, within CA264_01375 at 329.804 kb on + strand, within CA264_01375 at 329.832 kb on + strand, within CA264_01375 at 329.832 kb on + strand, within CA264_01375 at 329.833 kb on - strand, within CA264_01375 at 329.833 kb on - strand, within CA264_01375 at 329.833 kb on - strand, within CA264_01375 at 329.833 kb on - strand, within CA264_01375 at 329.833 kb on - strand, within CA264_01375 at 329.844 kb on + strand, within CA264_01375 at 329.845 kb on - strand, within CA264_01375 at 329.901 kb on + strand at 329.903 kb on + strand at 329.927 kb on + strand at 329.927 kb on + strand at 329.928 kb on - strand at 329.933 kb on + strand at 330.883 kb on + strand at 330.886 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 328,663 + CA264_01370 0.82 -0.2 328,668 + CA264_01370 0.82 -0.9 328,688 - CA264_01370 0.83 +0.2 328,699 + CA264_01370 0.83 -0.1 328,830 + CA264_01370 0.87 +0.1 328,830 + CA264_01370 0.87 -0.9 328,831 - CA264_01370 0.87 +0.5 328,831 - CA264_01370 0.87 -0.4 328,881 - CA264_01370 0.88 -0.3 328,945 - -1.2 328,949 - -1.1 328,949 - +0.7 328,954 + -0.7 328,955 - -0.6 328,955 - -0.3 329,046 - -0.5 329,073 + -1.5 329,073 + -0.3 329,074 - -2.4 329,074 - +0.7 329,074 - +0.1 329,113 + -0.7 329,113 + -0.8 329,113 + -0.6 329,114 - +1.9 329,114 - +0.2 329,122 + +0.1 329,218 + -0.9 329,219 - -0.4 329,243 + +0.0 329,244 - +0.1 329,339 + -0.1 329,367 + -0.3 329,368 - +0.7 329,416 + +0.3 329,417 - -0.3 329,419 + -0.9 329,420 - -0.2 329,420 - +2.1 329,421 + -0.1 329,421 + +0.1 329,422 - +0.5 329,428 - -0.2 329,454 + -2.6 329,502 - CA264_01375 0.10 +0.1 329,525 + CA264_01375 0.15 +0.5 329,525 + CA264_01375 0.15 -0.1 329,549 - CA264_01375 0.21 +0.0 329,581 - CA264_01375 0.28 -0.0 329,584 + CA264_01375 0.29 +0.7 329,585 - CA264_01375 0.29 +0.2 329,585 - CA264_01375 0.29 -1.1 329,634 + CA264_01375 0.40 -0.2 329,711 + CA264_01375 0.57 +0.4 329,711 + CA264_01375 0.57 -0.1 329,712 - CA264_01375 0.58 -0.3 329,716 + CA264_01375 0.59 -0.7 329,743 - CA264_01375 0.65 -0.2 329,748 - CA264_01375 0.66 +0.1 329,783 - CA264_01375 0.74 -0.0 329,783 - CA264_01375 0.74 +0.2 329,799 + CA264_01375 0.77 -0.1 329,800 - CA264_01375 0.78 -0.8 329,804 + CA264_01375 0.78 -0.9 329,832 + CA264_01375 0.85 -0.0 329,832 + CA264_01375 0.85 +1.2 329,833 - CA264_01375 0.85 +0.7 329,833 - CA264_01375 0.85 +0.7 329,833 - CA264_01375 0.85 -0.2 329,833 - CA264_01375 0.85 +0.3 329,833 - CA264_01375 0.85 -0.5 329,844 + CA264_01375 0.88 -0.1 329,845 - CA264_01375 0.88 +0.2 329,901 + +0.5 329,903 + -0.8 329,927 + -0.5 329,927 + -0.1 329,928 - -0.2 329,933 + +0.0 330,883 + -0.2 330,886 + +0.2
Or see this region's nucleotide sequence