Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00715 and CA264_00720 are separated by 195 nucleotides CA264_00720 and CA264_00725 are separated by 391 nucleotides CA264_00725 and CA264_00730 are separated by 2 nucleotides CA264_00730 and CA264_00735 are separated by 153 nucleotides CA264_00735 and CA264_00740 are separated by 59 nucleotides
CA264_00715: CA264_00715 - hypothetical protein, at 154,645 to 155,742
_00715
CA264_00720: CA264_00720 - 30S ribosomal protein S20, at 155,938 to 156,195
_00720
CA264_00725: CA264_00725 - pyruvate kinase, at 156,587 to 158,014
_00725
CA264_00730: CA264_00730 - hypothetical protein, at 158,017 to 158,445
_00730
CA264_00735: CA264_00735 - acyl carrier protein, at 158,599 to 158,835
_00735
CA264_00740: CA264_00740 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 158,895 to 160,148
_00740
Position (kb) 156
157
158
159 Strain fitness (log2 ratio) -2
-1
0
1 at 155.598 kb on + strand, within CA264_00715 at 155.598 kb on + strand, within CA264_00715 at 155.598 kb on + strand, within CA264_00715 at 155.659 kb on + strand at 155.727 kb on - strand at 155.730 kb on + strand at 155.743 kb on - strand at 155.788 kb on - strand at 155.822 kb on + strand at 155.822 kb on + strand at 155.823 kb on - strand at 156.193 kb on + strand at 156.230 kb on + strand at 156.277 kb on + strand at 156.283 kb on + strand at 156.284 kb on - strand at 156.330 kb on + strand at 156.401 kb on - strand at 156.413 kb on + strand at 156.414 kb on - strand at 156.414 kb on - strand at 156.417 kb on + strand at 156.418 kb on - strand at 156.424 kb on + strand at 156.506 kb on - strand at 156.516 kb on - strand at 156.519 kb on - strand at 156.520 kb on + strand at 156.521 kb on - strand at 156.521 kb on - strand at 156.564 kb on + strand at 156.569 kb on + strand at 156.570 kb on - strand at 156.570 kb on - strand at 156.570 kb on - strand at 156.599 kb on + strand at 156.599 kb on + strand at 156.600 kb on - strand at 156.673 kb on + strand at 156.673 kb on + strand at 156.674 kb on - strand at 156.679 kb on - strand at 156.949 kb on + strand, within CA264_00725 at 156.987 kb on - strand, within CA264_00725 at 157.005 kb on - strand, within CA264_00725 at 157.257 kb on - strand, within CA264_00725 at 157.659 kb on - strand, within CA264_00725 at 157.748 kb on + strand, within CA264_00725 at 157.752 kb on - strand, within CA264_00725 at 157.920 kb on - strand at 157.973 kb on + strand at 158.014 kb on + strand at 158.015 kb on - strand at 158.018 kb on + strand at 158.019 kb on - strand at 158.037 kb on + strand at 158.068 kb on + strand, within CA264_00730 at 158.156 kb on + strand, within CA264_00730 at 158.170 kb on + strand, within CA264_00730 at 158.256 kb on + strand, within CA264_00730 at 158.256 kb on + strand, within CA264_00730 at 158.258 kb on + strand, within CA264_00730 at 158.264 kb on + strand, within CA264_00730 at 158.264 kb on + strand, within CA264_00730 at 158.417 kb on + strand at 158.417 kb on + strand at 158.463 kb on + strand at 158.468 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 155,598 + CA264_00715 0.87 -0.2 155,598 + CA264_00715 0.87 +0.5 155,598 + CA264_00715 0.87 +0.7 155,659 + +0.4 155,727 - -0.4 155,730 + +0.5 155,743 - -0.9 155,788 - -0.3 155,822 + +0.8 155,822 + -0.0 155,823 - +0.4 156,193 + -0.6 156,230 + -0.2 156,277 + -0.3 156,283 + -0.6 156,284 - -1.2 156,330 + -0.2 156,401 - +0.2 156,413 + -0.2 156,414 - -0.4 156,414 - -0.6 156,417 + -0.7 156,418 - -1.0 156,424 + +0.2 156,506 - -0.5 156,516 - -1.3 156,519 - -1.2 156,520 + -1.1 156,521 - -0.2 156,521 - -0.3 156,564 + +0.2 156,569 + -0.3 156,570 - -0.3 156,570 - -0.6 156,570 - -0.1 156,599 + -0.3 156,599 + -0.8 156,600 - +0.1 156,673 + -0.0 156,673 + -1.1 156,674 - -0.8 156,679 - +0.3 156,949 + CA264_00725 0.25 -1.3 156,987 - CA264_00725 0.28 -0.9 157,005 - CA264_00725 0.29 -0.2 157,257 - CA264_00725 0.47 -1.0 157,659 - CA264_00725 0.75 +0.7 157,748 + CA264_00725 0.81 -0.8 157,752 - CA264_00725 0.82 -1.1 157,920 - -0.5 157,973 + -2.1 158,014 + +0.5 158,015 - -0.9 158,018 + -0.7 158,019 - -0.3 158,037 + -0.3 158,068 + CA264_00730 0.12 +0.7 158,156 + CA264_00730 0.32 +1.3 158,170 + CA264_00730 0.36 -0.2 158,256 + CA264_00730 0.56 -0.3 158,256 + CA264_00730 0.56 -0.5 158,258 + CA264_00730 0.56 -0.1 158,264 + CA264_00730 0.58 +0.2 158,264 + CA264_00730 0.58 +1.1 158,417 + -0.0 158,417 + -0.3 158,463 + -0.1 158,468 + -0.1
Or see this region's nucleotide sequence