Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS29565

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS29560 and ABIE40_RS29565 are separated by 143 nucleotidesABIE40_RS29565 and ABIE40_RS29570 overlap by 1 nucleotides ABIE40_RS29560: ABIE40_RS29560 - SMP-30/gluconolactonase/LRE family protein, at 604,549 to 605,379 _RS29560 ABIE40_RS29565: ABIE40_RS29565 - ABC transporter substrate-binding protein, at 605,523 to 606,536 _RS29565 ABIE40_RS29570: ABIE40_RS29570 - sugar ABC transporter ATP-binding protein, at 606,536 to 608,017 _RS29570 Position (kb) 605 606 607Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 604.648 kb on + strand, within ABIE40_RS29560at 604.648 kb on + strand, within ABIE40_RS29560at 604.648 kb on + strand, within ABIE40_RS29560at 604.648 kb on + strand, within ABIE40_RS29560at 604.648 kb on + strand, within ABIE40_RS29560at 604.649 kb on - strand, within ABIE40_RS29560at 604.651 kb on - strand, within ABIE40_RS29560at 604.713 kb on + strand, within ABIE40_RS29560at 604.714 kb on - strand, within ABIE40_RS29560at 604.813 kb on + strand, within ABIE40_RS29560at 604.873 kb on + strand, within ABIE40_RS29560at 604.873 kb on + strand, within ABIE40_RS29560at 604.873 kb on + strand, within ABIE40_RS29560at 604.874 kb on - strand, within ABIE40_RS29560at 604.989 kb on + strand, within ABIE40_RS29560at 605.073 kb on + strand, within ABIE40_RS29560at 605.074 kb on - strand, within ABIE40_RS29560at 605.178 kb on + strand, within ABIE40_RS29560at 605.190 kb on + strand, within ABIE40_RS29560at 605.191 kb on - strand, within ABIE40_RS29560at 605.191 kb on - strand, within ABIE40_RS29560at 605.191 kb on - strand, within ABIE40_RS29560at 605.191 kb on - strand, within ABIE40_RS29560at 605.315 kb on - strandat 605.319 kb on + strandat 605.340 kb on + strandat 605.340 kb on + strandat 605.340 kb on + strandat 605.341 kb on - strandat 605.397 kb on + strandat 605.622 kb on + strandat 605.623 kb on - strandat 605.623 kb on - strandat 605.661 kb on + strand, within ABIE40_RS29565at 605.661 kb on + strand, within ABIE40_RS29565at 605.661 kb on + strand, within ABIE40_RS29565at 605.662 kb on - strand, within ABIE40_RS29565at 605.662 kb on - strand, within ABIE40_RS29565at 605.721 kb on - strand, within ABIE40_RS29565at 605.784 kb on + strand, within ABIE40_RS29565at 605.784 kb on + strand, within ABIE40_RS29565at 605.858 kb on + strand, within ABIE40_RS29565at 605.859 kb on - strand, within ABIE40_RS29565at 605.882 kb on + strand, within ABIE40_RS29565at 605.882 kb on + strand, within ABIE40_RS29565at 605.904 kb on + strand, within ABIE40_RS29565at 605.972 kb on + strand, within ABIE40_RS29565at 605.973 kb on - strand, within ABIE40_RS29565at 605.973 kb on - strand, within ABIE40_RS29565at 605.973 kb on - strand, within ABIE40_RS29565at 606.157 kb on - strand, within ABIE40_RS29565at 606.173 kb on + strand, within ABIE40_RS29565at 606.193 kb on - strand, within ABIE40_RS29565at 606.303 kb on + strand, within ABIE40_RS29565at 606.303 kb on + strand, within ABIE40_RS29565at 606.407 kb on - strand, within ABIE40_RS29565at 606.407 kb on - strand, within ABIE40_RS29565at 606.407 kb on - strand, within ABIE40_RS29565at 606.407 kb on - strand, within ABIE40_RS29565at 606.414 kb on + strand, within ABIE40_RS29565at 606.415 kb on - strand, within ABIE40_RS29565at 606.415 kb on - strand, within ABIE40_RS29565at 606.471 kb on - strandat 606.515 kb on + strandat 606.515 kb on + strandat 606.524 kb on + strandat 606.525 kb on - strandat 606.525 kb on - strandat 606.770 kb on + strand, within ABIE40_RS29570at 606.771 kb on - strand, within ABIE40_RS29570at 606.939 kb on + strand, within ABIE40_RS29570at 606.939 kb on + strand, within ABIE40_RS29570at 606.939 kb on + strand, within ABIE40_RS29570at 606.940 kb on - strand, within ABIE40_RS29570at 606.940 kb on - strand, within ABIE40_RS29570at 607.251 kb on - strand, within ABIE40_RS29570at 607.262 kb on - strand, within ABIE40_RS29570

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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604,648 + ABIE40_RS29560 0.12 -0.1
604,648 + ABIE40_RS29560 0.12 +2.6
604,648 + ABIE40_RS29560 0.12 -0.1
604,648 + ABIE40_RS29560 0.12 -0.1
604,648 + ABIE40_RS29560 0.12 +1.4
604,649 - ABIE40_RS29560 0.12 +1.0
604,651 - ABIE40_RS29560 0.12 -2.1
604,713 + ABIE40_RS29560 0.20 +1.3
604,714 - ABIE40_RS29560 0.20 -0.2
604,813 + ABIE40_RS29560 0.32 -1.8
604,873 + ABIE40_RS29560 0.39 +0.3
604,873 + ABIE40_RS29560 0.39 -1.4
604,873 + ABIE40_RS29560 0.39 -0.7
604,874 - ABIE40_RS29560 0.39 +0.8
604,989 + ABIE40_RS29560 0.53 -0.3
605,073 + ABIE40_RS29560 0.63 +0.8
605,074 - ABIE40_RS29560 0.63 +0.7
605,178 + ABIE40_RS29560 0.76 -0.2
605,190 + ABIE40_RS29560 0.77 -1.0
605,191 - ABIE40_RS29560 0.77 +0.9
605,191 - ABIE40_RS29560 0.77 -0.4
605,191 - ABIE40_RS29560 0.77 -0.6
605,191 - ABIE40_RS29560 0.77 +1.1
605,315 - -0.5
605,319 + -1.6
605,340 + +0.7
605,340 + +0.8
605,340 + -0.6
605,341 - +0.3
605,397 + -1.2
605,622 + -1.5
605,623 - +2.0
605,623 - +1.7
605,661 + ABIE40_RS29565 0.14 -0.0
605,661 + ABIE40_RS29565 0.14 -1.7
605,661 + ABIE40_RS29565 0.14 -1.0
605,662 - ABIE40_RS29565 0.14 -1.7
605,662 - ABIE40_RS29565 0.14 +0.2
605,721 - ABIE40_RS29565 0.20 -1.2
605,784 + ABIE40_RS29565 0.26 -1.0
605,784 + ABIE40_RS29565 0.26 -0.5
605,858 + ABIE40_RS29565 0.33 -1.3
605,859 - ABIE40_RS29565 0.33 -2.4
605,882 + ABIE40_RS29565 0.35 +0.3
605,882 + ABIE40_RS29565 0.35 -2.0
605,904 + ABIE40_RS29565 0.38 -1.4
605,972 + ABIE40_RS29565 0.44 -1.6
605,973 - ABIE40_RS29565 0.44 -2.2
605,973 - ABIE40_RS29565 0.44 -1.0
605,973 - ABIE40_RS29565 0.44 +1.2
606,157 - ABIE40_RS29565 0.63 -2.3
606,173 + ABIE40_RS29565 0.64 -0.2
606,193 - ABIE40_RS29565 0.66 -0.0
606,303 + ABIE40_RS29565 0.77 -0.5
606,303 + ABIE40_RS29565 0.77 -1.2
606,407 - ABIE40_RS29565 0.87 -0.1
606,407 - ABIE40_RS29565 0.87 +0.4
606,407 - ABIE40_RS29565 0.87 -1.4
606,407 - ABIE40_RS29565 0.87 -1.0
606,414 + ABIE40_RS29565 0.88 -0.4
606,415 - ABIE40_RS29565 0.88 +0.5
606,415 - ABIE40_RS29565 0.88 -2.4
606,471 - +0.2
606,515 + +1.4
606,515 + -1.1
606,524 + -0.6
606,525 - -0.3
606,525 - +0.3
606,770 + ABIE40_RS29570 0.16 +1.2
606,771 - ABIE40_RS29570 0.16 -0.2
606,939 + ABIE40_RS29570 0.27 -2.9
606,939 + ABIE40_RS29570 0.27 +1.1
606,939 + ABIE40_RS29570 0.27 -1.2
606,940 - ABIE40_RS29570 0.27 +1.1
606,940 - ABIE40_RS29570 0.27 -0.4
607,251 - ABIE40_RS29570 0.48 -1.2
607,262 - ABIE40_RS29570 0.49 +0.0

Or see this region's nucleotide sequence