Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS22990 and ABIE40_RS22995 are separated by 3 nucleotides ABIE40_RS22995 and ABIE40_RS23000 are separated by 59 nucleotides ABIE40_RS23000 and ABIE40_RS23005 are separated by 112 nucleotides
ABIE40_RS22990: ABIE40_RS22990 - ABC transporter permease, at 744,834 to 745,658
_RS22990
ABIE40_RS22995: ABIE40_RS22995 - ABC transporter permease, at 745,662 to 746,426
_RS22995
ABIE40_RS23000: ABIE40_RS23000 - TetR/AcrR family transcriptional regulator, at 746,486 to 747,049
_RS23000
ABIE40_RS23005: ABIE40_RS23005 - enolase C-terminal domain-like protein, at 747,162 to 748,625
_RS23005
Position (kb) 746
747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 745.509 kb on + strand, within ABIE40_RS22990 at 745.509 kb on + strand, within ABIE40_RS22990 at 745.510 kb on - strand, within ABIE40_RS22990 at 745.624 kb on + strand at 745.625 kb on - strand at 745.725 kb on - strand at 746.175 kb on + strand, within ABIE40_RS22995 at 746.175 kb on + strand, within ABIE40_RS22995 at 746.176 kb on - strand, within ABIE40_RS22995 at 746.176 kb on - strand, within ABIE40_RS22995 at 746.229 kb on + strand, within ABIE40_RS22995 at 746.229 kb on + strand, within ABIE40_RS22995 at 746.229 kb on + strand, within ABIE40_RS22995 at 746.229 kb on + strand, within ABIE40_RS22995 at 746.230 kb on - strand, within ABIE40_RS22995 at 746.230 kb on - strand, within ABIE40_RS22995 at 746.230 kb on - strand, within ABIE40_RS22995 at 746.230 kb on - strand, within ABIE40_RS22995 at 746.230 kb on - strand, within ABIE40_RS22995 at 746.230 kb on - strand, within ABIE40_RS22995 at 746.230 kb on - strand, within ABIE40_RS22995 at 746.260 kb on - strand, within ABIE40_RS22995 at 746.433 kb on + strand at 746.483 kb on + strand at 746.483 kb on + strand at 746.483 kb on + strand at 746.514 kb on + strand at 746.514 kb on + strand at 746.536 kb on - strand at 746.688 kb on + strand, within ABIE40_RS23000 at 746.688 kb on - strand, within ABIE40_RS23000 at 746.688 kb on - strand, within ABIE40_RS23000 at 746.688 kb on - strand, within ABIE40_RS23000 at 746.728 kb on - strand, within ABIE40_RS23000 at 746.728 kb on - strand, within ABIE40_RS23000 at 746.873 kb on - strand, within ABIE40_RS23000 at 746.874 kb on + strand, within ABIE40_RS23000 at 746.922 kb on + strand, within ABIE40_RS23000 at 746.922 kb on + strand, within ABIE40_RS23000 at 746.923 kb on - strand, within ABIE40_RS23000 at 746.926 kb on - strand, within ABIE40_RS23000 at 746.926 kb on - strand, within ABIE40_RS23000 at 747.044 kb on - strand at 747.180 kb on + strand at 747.180 kb on + strand at 747.180 kb on + strand at 747.180 kb on + strand at 747.181 kb on - strand at 747.181 kb on - strand at 747.183 kb on + strand at 747.183 kb on + strand at 747.184 kb on - strand at 747.185 kb on + strand at 747.185 kb on + strand at 747.186 kb on - strand at 747.516 kb on - strand, within ABIE40_RS23005 at 747.516 kb on - strand, within ABIE40_RS23005 at 747.612 kb on + strand, within ABIE40_RS23005 at 747.612 kb on + strand, within ABIE40_RS23005 at 747.612 kb on + strand, within ABIE40_RS23005 at 747.613 kb on - strand, within ABIE40_RS23005 at 747.627 kb on - strand, within ABIE40_RS23005 at 747.793 kb on - strand, within ABIE40_RS23005 at 747.912 kb on - strand, within ABIE40_RS23005 at 747.912 kb on - strand, within ABIE40_RS23005 at 747.921 kb on + strand, within ABIE40_RS23005 at 747.921 kb on + strand, within ABIE40_RS23005 at 747.922 kb on - strand, within ABIE40_RS23005 at 747.922 kb on - strand, within ABIE40_RS23005 at 747.922 kb on - strand, within ABIE40_RS23005 at 747.922 kb on - strand, within ABIE40_RS23005 at 747.922 kb on - strand, within ABIE40_RS23005 at 747.922 kb on - strand, within ABIE40_RS23005 at 747.922 kb on - strand, within ABIE40_RS23005 at 747.936 kb on + strand, within ABIE40_RS23005 at 747.937 kb on - strand, within ABIE40_RS23005 at 747.939 kb on + strand, within ABIE40_RS23005 at 747.939 kb on + strand, within ABIE40_RS23005 at 747.939 kb on + strand, within ABIE40_RS23005
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 745,509 + ABIE40_RS22990 0.82 +0.4 745,509 + ABIE40_RS22990 0.82 -2.2 745,510 - ABIE40_RS22990 0.82 +0.4 745,624 + -0.5 745,625 - -1.0 745,725 - -1.3 746,175 + ABIE40_RS22995 0.67 -0.5 746,175 + ABIE40_RS22995 0.67 -0.4 746,176 - ABIE40_RS22995 0.67 -1.3 746,176 - ABIE40_RS22995 0.67 -0.2 746,229 + ABIE40_RS22995 0.74 -0.3 746,229 + ABIE40_RS22995 0.74 -0.9 746,229 + ABIE40_RS22995 0.74 -0.3 746,229 + ABIE40_RS22995 0.74 -0.5 746,230 - ABIE40_RS22995 0.74 +0.6 746,230 - ABIE40_RS22995 0.74 -0.3 746,230 - ABIE40_RS22995 0.74 +1.1 746,230 - ABIE40_RS22995 0.74 +1.1 746,230 - ABIE40_RS22995 0.74 -0.4 746,230 - ABIE40_RS22995 0.74 +0.3 746,230 - ABIE40_RS22995 0.74 -0.5 746,260 - ABIE40_RS22995 0.78 +1.6 746,433 + +2.3 746,483 + +0.7 746,483 + -1.3 746,483 + -0.4 746,514 + -0.1 746,514 + +2.2 746,536 - -1.8 746,688 + ABIE40_RS23000 0.36 -0.6 746,688 - ABIE40_RS23000 0.36 -1.3 746,688 - ABIE40_RS23000 0.36 -1.7 746,688 - ABIE40_RS23000 0.36 -3.0 746,728 - ABIE40_RS23000 0.43 -1.3 746,728 - ABIE40_RS23000 0.43 -1.5 746,873 - ABIE40_RS23000 0.69 -1.3 746,874 + ABIE40_RS23000 0.69 -0.8 746,922 + ABIE40_RS23000 0.77 -0.4 746,922 + ABIE40_RS23000 0.77 +0.1 746,923 - ABIE40_RS23000 0.77 -0.6 746,926 - ABIE40_RS23000 0.78 -1.3 746,926 - ABIE40_RS23000 0.78 +0.7 747,044 - +0.1 747,180 + +1.2 747,180 + +0.8 747,180 + -0.3 747,180 + -0.5 747,181 - +2.5 747,181 - -1.0 747,183 + -0.7 747,183 + -0.0 747,184 - +0.6 747,185 + +1.6 747,185 + +0.8 747,186 - -0.7 747,516 - ABIE40_RS23005 0.24 -0.5 747,516 - ABIE40_RS23005 0.24 -0.7 747,612 + ABIE40_RS23005 0.31 -0.6 747,612 + ABIE40_RS23005 0.31 -0.1 747,612 + ABIE40_RS23005 0.31 -1.0 747,613 - ABIE40_RS23005 0.31 +1.1 747,627 - ABIE40_RS23005 0.32 +0.5 747,793 - ABIE40_RS23005 0.43 +0.6 747,912 - ABIE40_RS23005 0.51 -0.4 747,912 - ABIE40_RS23005 0.51 +0.6 747,921 + ABIE40_RS23005 0.52 +0.8 747,921 + ABIE40_RS23005 0.52 +1.3 747,922 - ABIE40_RS23005 0.52 +0.5 747,922 - ABIE40_RS23005 0.52 -0.8 747,922 - ABIE40_RS23005 0.52 +0.1 747,922 - ABIE40_RS23005 0.52 +0.5 747,922 - ABIE40_RS23005 0.52 -0.9 747,922 - ABIE40_RS23005 0.52 -0.0 747,922 - ABIE40_RS23005 0.52 +0.0 747,936 + ABIE40_RS23005 0.53 -1.7 747,937 - ABIE40_RS23005 0.53 +1.2 747,939 + ABIE40_RS23005 0.53 +1.2 747,939 + ABIE40_RS23005 0.53 +0.4 747,939 + ABIE40_RS23005 0.53 -0.1
Or see this region's nucleotide sequence