Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21220 and ABIE40_RS21225 overlap by 4 nucleotides ABIE40_RS21225 and ABIE40_RS21230 are separated by 84 nucleotides ABIE40_RS21230 and ABIE40_RS21235 are separated by 260 nucleotides
ABIE40_RS21220: ABIE40_RS21220 - amino acid ABC transporter permease, at 358,571 to 359,527
_RS21220
ABIE40_RS21225: ABIE40_RS21225 - amino acid ABC transporter ATP-binding protein, at 359,524 to 360,303
_RS21225
ABIE40_RS21230: ABIE40_RS21230 - M20 aminoacylase family protein, at 360,388 to 361,569
_RS21230
ABIE40_RS21235: ABIE40_RS21235 - Gfo/Idh/MocA family oxidoreductase, at 361,830 to 362,987
_RS21235
Position (kb) 360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 359.414 kb on + strand, within ABIE40_RS21220 at 359.414 kb on + strand, within ABIE40_RS21220 at 359.414 kb on + strand, within ABIE40_RS21220 at 359.415 kb on - strand, within ABIE40_RS21220 at 359.427 kb on - strand, within ABIE40_RS21220 at 359.427 kb on - strand, within ABIE40_RS21220 at 359.427 kb on - strand, within ABIE40_RS21220 at 359.427 kb on - strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.429 kb on + strand, within ABIE40_RS21220 at 359.430 kb on - strand, within ABIE40_RS21220 at 359.430 kb on - strand, within ABIE40_RS21220 at 359.430 kb on - strand, within ABIE40_RS21220 at 359.430 kb on - strand, within ABIE40_RS21220 at 359.688 kb on + strand, within ABIE40_RS21225 at 359.688 kb on + strand, within ABIE40_RS21225 at 359.689 kb on - strand, within ABIE40_RS21225 at 359.689 kb on - strand, within ABIE40_RS21225 at 359.689 kb on - strand, within ABIE40_RS21225 at 359.689 kb on - strand, within ABIE40_RS21225 at 359.750 kb on - strand, within ABIE40_RS21225 at 359.784 kb on + strand, within ABIE40_RS21225 at 359.785 kb on - strand, within ABIE40_RS21225 at 359.846 kb on - strand, within ABIE40_RS21225 at 359.853 kb on + strand, within ABIE40_RS21225 at 359.977 kb on + strand, within ABIE40_RS21225 at 359.977 kb on + strand, within ABIE40_RS21225 at 359.977 kb on + strand, within ABIE40_RS21225 at 360.051 kb on - strand, within ABIE40_RS21225 at 360.051 kb on - strand, within ABIE40_RS21225 at 360.051 kb on - strand, within ABIE40_RS21225 at 360.051 kb on - strand, within ABIE40_RS21225 at 360.544 kb on + strand, within ABIE40_RS21230 at 360.544 kb on + strand, within ABIE40_RS21230 at 360.544 kb on + strand, within ABIE40_RS21230 at 360.545 kb on - strand, within ABIE40_RS21230 at 360.545 kb on - strand, within ABIE40_RS21230 at 360.545 kb on - strand, within ABIE40_RS21230 at 360.545 kb on - strand, within ABIE40_RS21230 at 360.673 kb on + strand, within ABIE40_RS21230 at 360.674 kb on - strand, within ABIE40_RS21230 at 360.674 kb on - strand, within ABIE40_RS21230 at 360.723 kb on + strand, within ABIE40_RS21230 at 360.723 kb on + strand, within ABIE40_RS21230 at 360.723 kb on + strand, within ABIE40_RS21230 at 360.723 kb on + strand, within ABIE40_RS21230 at 360.723 kb on + strand, within ABIE40_RS21230 at 360.724 kb on - strand, within ABIE40_RS21230 at 360.724 kb on - strand, within ABIE40_RS21230 at 360.724 kb on - strand, within ABIE40_RS21230 at 360.724 kb on - strand, within ABIE40_RS21230 at 360.724 kb on - strand, within ABIE40_RS21230 at 360.724 kb on - strand, within ABIE40_RS21230 at 360.724 kb on - strand, within ABIE40_RS21230 at 360.751 kb on + strand, within ABIE40_RS21230 at 360.752 kb on - strand, within ABIE40_RS21230 at 360.886 kb on + strand, within ABIE40_RS21230 at 360.887 kb on - strand, within ABIE40_RS21230 at 360.887 kb on - strand, within ABIE40_RS21230 at 360.887 kb on - strand, within ABIE40_RS21230 at 360.887 kb on - strand, within ABIE40_RS21230 at 361.282 kb on + strand, within ABIE40_RS21230 at 361.283 kb on - strand, within ABIE40_RS21230 at 361.283 kb on - strand, within ABIE40_RS21230 at 361.556 kb on - strand at 361.556 kb on - strand at 361.556 kb on - strand at 361.567 kb on + strand at 361.568 kb on - strand at 361.568 kb on - strand at 361.720 kb on + strand at 361.886 kb on + strand at 361.920 kb on + strand at 361.921 kb on - strand at 361.921 kb on - strand at 361.921 kb on - strand at 361.986 kb on + strand, within ABIE40_RS21235 at 361.986 kb on + strand, within ABIE40_RS21235 at 361.986 kb on + strand, within ABIE40_RS21235 at 361.987 kb on - strand, within ABIE40_RS21235 at 361.987 kb on - strand, within ABIE40_RS21235 at 361.987 kb on - strand, within ABIE40_RS21235 at 361.991 kb on + strand, within ABIE40_RS21235 at 361.991 kb on + strand, within ABIE40_RS21235 at 361.992 kb on - strand, within ABIE40_RS21235 at 362.069 kb on + strand, within ABIE40_RS21235 at 362.070 kb on - strand, within ABIE40_RS21235 at 362.220 kb on + strand, within ABIE40_RS21235 at 362.220 kb on + strand, within ABIE40_RS21235 at 362.220 kb on + strand, within ABIE40_RS21235 at 362.220 kb on + strand, within ABIE40_RS21235 at 362.220 kb on + strand, within ABIE40_RS21235 at 362.221 kb on - strand, within ABIE40_RS21235 at 362.221 kb on - strand, within ABIE40_RS21235 at 362.221 kb on - strand, within ABIE40_RS21235 at 362.221 kb on - strand, within ABIE40_RS21235 at 362.291 kb on + strand, within ABIE40_RS21235 at 362.291 kb on + strand, within ABIE40_RS21235 at 362.291 kb on + strand, within ABIE40_RS21235 at 362.301 kb on + strand, within ABIE40_RS21235 at 362.346 kb on + strand, within ABIE40_RS21235 at 362.347 kb on - strand, within ABIE40_RS21235 at 362.394 kb on + strand, within ABIE40_RS21235 at 362.394 kb on + strand, within ABIE40_RS21235 at 362.395 kb on - strand, within ABIE40_RS21235 at 362.395 kb on - strand, within ABIE40_RS21235
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 359,414 + ABIE40_RS21220 0.88 -0.1 359,414 + ABIE40_RS21220 0.88 +0.4 359,414 + ABIE40_RS21220 0.88 +3.1 359,415 - ABIE40_RS21220 0.88 +0.7 359,427 - ABIE40_RS21220 0.89 -1.8 359,427 - ABIE40_RS21220 0.89 -0.8 359,427 - ABIE40_RS21220 0.89 -0.2 359,427 - ABIE40_RS21220 0.89 -0.4 359,429 + ABIE40_RS21220 0.90 +3.1 359,429 + ABIE40_RS21220 0.90 +1.4 359,429 + ABIE40_RS21220 0.90 -0.7 359,429 + ABIE40_RS21220 0.90 +1.2 359,429 + ABIE40_RS21220 0.90 -1.4 359,430 - ABIE40_RS21220 0.90 -0.1 359,430 - ABIE40_RS21220 0.90 -1.3 359,430 - ABIE40_RS21220 0.90 +1.1 359,430 - ABIE40_RS21220 0.90 -0.8 359,688 + ABIE40_RS21225 0.21 -0.7 359,688 + ABIE40_RS21225 0.21 -0.3 359,689 - ABIE40_RS21225 0.21 -0.0 359,689 - ABIE40_RS21225 0.21 -0.9 359,689 - ABIE40_RS21225 0.21 -1.7 359,689 - ABIE40_RS21225 0.21 -0.5 359,750 - ABIE40_RS21225 0.29 +1.0 359,784 + ABIE40_RS21225 0.33 -0.2 359,785 - ABIE40_RS21225 0.33 -1.1 359,846 - ABIE40_RS21225 0.41 -0.3 359,853 + ABIE40_RS21225 0.42 -0.9 359,977 + ABIE40_RS21225 0.58 +1.5 359,977 + ABIE40_RS21225 0.58 -0.2 359,977 + ABIE40_RS21225 0.58 -0.3 360,051 - ABIE40_RS21225 0.68 +0.7 360,051 - ABIE40_RS21225 0.68 +0.5 360,051 - ABIE40_RS21225 0.68 +0.9 360,051 - ABIE40_RS21225 0.68 -1.3 360,544 + ABIE40_RS21230 0.13 -0.3 360,544 + ABIE40_RS21230 0.13 -1.7 360,544 + ABIE40_RS21230 0.13 -1.6 360,545 - ABIE40_RS21230 0.13 -0.5 360,545 - ABIE40_RS21230 0.13 -1.3 360,545 - ABIE40_RS21230 0.13 +3.3 360,545 - ABIE40_RS21230 0.13 +1.3 360,673 + ABIE40_RS21230 0.24 +1.4 360,674 - ABIE40_RS21230 0.24 -2.6 360,674 - ABIE40_RS21230 0.24 +1.8 360,723 + ABIE40_RS21230 0.28 +2.8 360,723 + ABIE40_RS21230 0.28 +1.9 360,723 + ABIE40_RS21230 0.28 -0.1 360,723 + ABIE40_RS21230 0.28 +0.7 360,723 + ABIE40_RS21230 0.28 -0.1 360,724 - ABIE40_RS21230 0.28 +0.0 360,724 - ABIE40_RS21230 0.28 -0.9 360,724 - ABIE40_RS21230 0.28 -0.2 360,724 - ABIE40_RS21230 0.28 +0.5 360,724 - ABIE40_RS21230 0.28 -1.0 360,724 - ABIE40_RS21230 0.28 +0.7 360,724 - ABIE40_RS21230 0.28 +0.3 360,751 + ABIE40_RS21230 0.31 -1.4 360,752 - ABIE40_RS21230 0.31 +0.2 360,886 + ABIE40_RS21230 0.42 +0.9 360,887 - ABIE40_RS21230 0.42 +1.9 360,887 - ABIE40_RS21230 0.42 -1.2 360,887 - ABIE40_RS21230 0.42 -1.5 360,887 - ABIE40_RS21230 0.42 -0.1 361,282 + ABIE40_RS21230 0.76 -0.1 361,283 - ABIE40_RS21230 0.76 -3.0 361,283 - ABIE40_RS21230 0.76 +0.3 361,556 - +2.1 361,556 - -0.2 361,556 - -0.1 361,567 + -0.2 361,568 - +1.6 361,568 - -0.5 361,720 + -1.9 361,886 + +1.8 361,920 + -1.7 361,921 - -3.4 361,921 - -3.0 361,921 - +1.0 361,986 + ABIE40_RS21235 0.13 +0.3 361,986 + ABIE40_RS21235 0.13 +0.6 361,986 + ABIE40_RS21235 0.13 -2.6 361,987 - ABIE40_RS21235 0.14 -1.1 361,987 - ABIE40_RS21235 0.14 -0.9 361,987 - ABIE40_RS21235 0.14 -0.6 361,991 + ABIE40_RS21235 0.14 -0.7 361,991 + ABIE40_RS21235 0.14 +2.2 361,992 - ABIE40_RS21235 0.14 -0.3 362,069 + ABIE40_RS21235 0.21 -3.3 362,070 - ABIE40_RS21235 0.21 -2.1 362,220 + ABIE40_RS21235 0.34 -0.3 362,220 + ABIE40_RS21235 0.34 +0.0 362,220 + ABIE40_RS21235 0.34 -0.9 362,220 + ABIE40_RS21235 0.34 +0.6 362,220 + ABIE40_RS21235 0.34 -0.2 362,221 - ABIE40_RS21235 0.34 +0.9 362,221 - ABIE40_RS21235 0.34 +1.9 362,221 - ABIE40_RS21235 0.34 -0.5 362,221 - ABIE40_RS21235 0.34 +0.0 362,291 + ABIE40_RS21235 0.40 +0.1 362,291 + ABIE40_RS21235 0.40 +0.1 362,291 + ABIE40_RS21235 0.40 -1.2 362,301 + ABIE40_RS21235 0.41 -1.2 362,346 + ABIE40_RS21235 0.45 +0.5 362,347 - ABIE40_RS21235 0.45 +0.1 362,394 + ABIE40_RS21235 0.49 -0.6 362,394 + ABIE40_RS21235 0.49 -0.6 362,395 - ABIE40_RS21235 0.49 -1.3 362,395 - ABIE40_RS21235 0.49 -0.6
Or see this region's nucleotide sequence