Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20465

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20460 and ABIE40_RS20465 are separated by 41 nucleotidesABIE40_RS20465 and ABIE40_RS20470 are separated by 14 nucleotidesABIE40_RS20470 and ABIE40_RS20475 are separated by 232 nucleotides ABIE40_RS20460: ABIE40_RS20460 - precorrin-3B synthase, at 195,292 to 196,656 _RS20460 ABIE40_RS20465: ABIE40_RS20465 - precorrin-6A synthase (deacetylating), at 196,698 to 197,456 _RS20465 ABIE40_RS20470: ABIE40_RS20470 - DUF2938 domain-containing protein, at 197,471 to 197,950 _RS20470 ABIE40_RS20475: ABIE40_RS20475 - GbsR/MarR family transcriptional regulator, at 198,183 to 198,755 _RS20475 Position (kb) 196 197 198Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 196.112 kb on - strand, within ABIE40_RS20460at 196.112 kb on - strand, within ABIE40_RS20460at 196.143 kb on + strand, within ABIE40_RS20460at 196.667 kb on + strandat 196.668 kb on - strandat 196.668 kb on - strandat 196.699 kb on + strandat 196.700 kb on - strandat 196.732 kb on + strandat 196.732 kb on + strandat 196.733 kb on - strandat 196.733 kb on - strandat 196.733 kb on - strandat 196.736 kb on + strandat 196.736 kb on + strandat 196.737 kb on - strandat 196.737 kb on - strandat 196.739 kb on - strandat 196.847 kb on - strand, within ABIE40_RS20465at 196.847 kb on - strand, within ABIE40_RS20465at 197.036 kb on + strand, within ABIE40_RS20465at 197.111 kb on - strand, within ABIE40_RS20465at 197.182 kb on + strand, within ABIE40_RS20465at 197.182 kb on + strand, within ABIE40_RS20465at 197.183 kb on - strand, within ABIE40_RS20465at 197.226 kb on - strand, within ABIE40_RS20465at 197.227 kb on + strand, within ABIE40_RS20465at 197.227 kb on + strand, within ABIE40_RS20465at 197.227 kb on + strand, within ABIE40_RS20465at 197.228 kb on - strand, within ABIE40_RS20465at 197.228 kb on - strand, within ABIE40_RS20465at 197.296 kb on + strand, within ABIE40_RS20465at 197.519 kb on - strand, within ABIE40_RS20470at 197.519 kb on - strand, within ABIE40_RS20470at 197.709 kb on + strand, within ABIE40_RS20470at 197.709 kb on + strand, within ABIE40_RS20470at 197.710 kb on - strand, within ABIE40_RS20470at 197.727 kb on + strand, within ABIE40_RS20470at 197.727 kb on + strand, within ABIE40_RS20470at 197.727 kb on + strand, within ABIE40_RS20470at 197.727 kb on + strand, within ABIE40_RS20470at 197.727 kb on + strand, within ABIE40_RS20470at 197.727 kb on + strand, within ABIE40_RS20470at 197.754 kb on + strand, within ABIE40_RS20470at 197.764 kb on - strand, within ABIE40_RS20470at 197.764 kb on - strand, within ABIE40_RS20470at 197.817 kb on + strand, within ABIE40_RS20470at 197.817 kb on + strand, within ABIE40_RS20470at 197.817 kb on + strand, within ABIE40_RS20470at 197.818 kb on - strand, within ABIE40_RS20470at 197.818 kb on - strand, within ABIE40_RS20470at 197.818 kb on - strand, within ABIE40_RS20470at 197.818 kb on - strand, within ABIE40_RS20470at 197.818 kb on - strand, within ABIE40_RS20470at 197.942 kb on - strandat 197.986 kb on + strandat 197.987 kb on - strandat 198.023 kb on - strandat 198.132 kb on - strandat 198.133 kb on + strandat 198.134 kb on - strandat 198.273 kb on + strand, within ABIE40_RS20475at 198.273 kb on + strand, within ABIE40_RS20475at 198.273 kb on + strand, within ABIE40_RS20475at 198.273 kb on + strand, within ABIE40_RS20475at 198.273 kb on + strand, within ABIE40_RS20475at 198.273 kb on + strand, within ABIE40_RS20475at 198.273 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.285 kb on + strand, within ABIE40_RS20475at 198.286 kb on - strand, within ABIE40_RS20475at 198.286 kb on - strand, within ABIE40_RS20475at 198.286 kb on - strand, within ABIE40_RS20475at 198.286 kb on - strand, within ABIE40_RS20475at 198.286 kb on - strand, within ABIE40_RS20475at 198.286 kb on - strand, within ABIE40_RS20475at 198.352 kb on + strand, within ABIE40_RS20475at 198.353 kb on - strand, within ABIE40_RS20475at 198.353 kb on - strand, within ABIE40_RS20475

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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196,112 - ABIE40_RS20460 0.60 -1.2
196,112 - ABIE40_RS20460 0.60 -2.2
196,143 + ABIE40_RS20460 0.62 -1.8
196,667 + +0.0
196,668 - +0.1
196,668 - +0.1
196,699 + +1.0
196,700 - -0.6
196,732 + -2.5
196,732 + -1.2
196,733 - +0.3
196,733 - -0.3
196,733 - -2.3
196,736 + -2.3
196,736 + -0.9
196,737 - +0.7
196,737 - -2.2
196,739 - -1.5
196,847 - ABIE40_RS20465 0.20 +2.3
196,847 - ABIE40_RS20465 0.20 -0.5
197,036 + ABIE40_RS20465 0.45 -0.5
197,111 - ABIE40_RS20465 0.54 -2.1
197,182 + ABIE40_RS20465 0.64 -2.5
197,182 + ABIE40_RS20465 0.64 -1.4
197,183 - ABIE40_RS20465 0.64 -1.3
197,226 - ABIE40_RS20465 0.70 -2.8
197,227 + ABIE40_RS20465 0.70 -0.3
197,227 + ABIE40_RS20465 0.70 -0.9
197,227 + ABIE40_RS20465 0.70 +0.3
197,228 - ABIE40_RS20465 0.70 -1.8
197,228 - ABIE40_RS20465 0.70 -3.4
197,296 + ABIE40_RS20465 0.79 -1.1
197,519 - ABIE40_RS20470 0.10 -1.6
197,519 - ABIE40_RS20470 0.10 -1.6
197,709 + ABIE40_RS20470 0.50 +0.6
197,709 + ABIE40_RS20470 0.50 -0.2
197,710 - ABIE40_RS20470 0.50 +1.3
197,727 + ABIE40_RS20470 0.53 -1.3
197,727 + ABIE40_RS20470 0.53 -3.4
197,727 + ABIE40_RS20470 0.53 -0.6
197,727 + ABIE40_RS20470 0.53 +1.1
197,727 + ABIE40_RS20470 0.53 -2.4
197,727 + ABIE40_RS20470 0.53 +0.4
197,754 + ABIE40_RS20470 0.59 -1.1
197,764 - ABIE40_RS20470 0.61 -1.6
197,764 - ABIE40_RS20470 0.61 -1.1
197,817 + ABIE40_RS20470 0.72 -0.4
197,817 + ABIE40_RS20470 0.72 -1.7
197,817 + ABIE40_RS20470 0.72 -0.6
197,818 - ABIE40_RS20470 0.72 -0.8
197,818 - ABIE40_RS20470 0.72 -0.7
197,818 - ABIE40_RS20470 0.72 -1.3
197,818 - ABIE40_RS20470 0.72 +0.5
197,818 - ABIE40_RS20470 0.72 -1.6
197,942 - -1.0
197,986 + +0.5
197,987 - -1.2
198,023 - -0.4
198,132 - -0.5
198,133 + +0.8
198,134 - -1.1
198,273 + ABIE40_RS20475 0.16 -0.2
198,273 + ABIE40_RS20475 0.16 -0.6
198,273 + ABIE40_RS20475 0.16 -0.7
198,273 + ABIE40_RS20475 0.16 -0.7
198,273 + ABIE40_RS20475 0.16 -0.2
198,273 + ABIE40_RS20475 0.16 -0.3
198,273 + ABIE40_RS20475 0.16 +2.0
198,285 + ABIE40_RS20475 0.18 -1.1
198,285 + ABIE40_RS20475 0.18 +0.0
198,285 + ABIE40_RS20475 0.18 -0.7
198,285 + ABIE40_RS20475 0.18 +1.6
198,285 + ABIE40_RS20475 0.18 -0.7
198,285 + ABIE40_RS20475 0.18 +1.0
198,285 + ABIE40_RS20475 0.18 +0.4
198,285 + ABIE40_RS20475 0.18 +0.4
198,286 - ABIE40_RS20475 0.18 +0.5
198,286 - ABIE40_RS20475 0.18 -0.4
198,286 - ABIE40_RS20475 0.18 -1.9
198,286 - ABIE40_RS20475 0.18 +0.9
198,286 - ABIE40_RS20475 0.18 +3.3
198,286 - ABIE40_RS20475 0.18 -0.1
198,352 + ABIE40_RS20475 0.29 +0.3
198,353 - ABIE40_RS20475 0.30 -1.6
198,353 - ABIE40_RS20475 0.30 +0.4

Or see this region's nucleotide sequence