Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS07030

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS07025 and ABIE40_RS07030 are separated by 108 nucleotidesABIE40_RS07030 and ABIE40_RS07035 are separated by 79 nucleotidesABIE40_RS07035 and ABIE40_RS07040 are separated by 8 nucleotides ABIE40_RS07025: ABIE40_RS07025 - methyltransferase domain-containing protein, at 1,372,334 to 1,373,179 _RS07025 ABIE40_RS07030: ABIE40_RS07030 - tetratricopeptide repeat protein, at 1,373,288 to 1,375,276 _RS07030 ABIE40_RS07035: ABIE40_RS07035 - LysE family transporter, at 1,375,356 to 1,375,973 _RS07035 ABIE40_RS07040: ABIE40_RS07040 - cupin domain-containing protein, at 1,375,982 to 1,376,326 _RS07040 Position (kb) 1373 1374 1375 1376Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1372.335 kb on + strandat 1372.335 kb on + strandat 1372.335 kb on + strandat 1372.336 kb on - strandat 1372.362 kb on + strandat 1372.363 kb on - strandat 1372.491 kb on + strand, within ABIE40_RS07025at 1372.491 kb on + strand, within ABIE40_RS07025at 1372.491 kb on + strand, within ABIE40_RS07025at 1372.491 kb on + strand, within ABIE40_RS07025at 1372.491 kb on + strand, within ABIE40_RS07025at 1372.491 kb on + strand, within ABIE40_RS07025at 1372.491 kb on + strand, within ABIE40_RS07025at 1372.491 kb on + strand, within ABIE40_RS07025at 1372.492 kb on - strand, within ABIE40_RS07025at 1372.492 kb on - strand, within ABIE40_RS07025at 1372.492 kb on - strand, within ABIE40_RS07025at 1372.534 kb on - strand, within ABIE40_RS07025at 1372.809 kb on + strand, within ABIE40_RS07025at 1372.810 kb on - strand, within ABIE40_RS07025at 1372.810 kb on - strand, within ABIE40_RS07025at 1372.810 kb on - strand, within ABIE40_RS07025at 1372.923 kb on + strand, within ABIE40_RS07025at 1372.923 kb on + strand, within ABIE40_RS07025at 1372.924 kb on - strand, within ABIE40_RS07025at 1373.135 kb on + strandat 1373.136 kb on - strandat 1373.262 kb on + strandat 1373.262 kb on + strandat 1373.262 kb on + strandat 1373.262 kb on + strandat 1373.262 kb on + strandat 1373.262 kb on + strandat 1373.263 kb on - strandat 1373.263 kb on - strandat 1373.264 kb on + strandat 1373.265 kb on - strandat 1373.435 kb on + strandat 1373.846 kb on + strand, within ABIE40_RS07030at 1373.846 kb on + strand, within ABIE40_RS07030at 1373.847 kb on - strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.950 kb on + strand, within ABIE40_RS07030at 1373.951 kb on - strand, within ABIE40_RS07030at 1373.951 kb on - strand, within ABIE40_RS07030at 1373.951 kb on - strand, within ABIE40_RS07030at 1373.951 kb on - strand, within ABIE40_RS07030at 1373.951 kb on - strand, within ABIE40_RS07030at 1373.951 kb on - strand, within ABIE40_RS07030at 1374.176 kb on + strand, within ABIE40_RS07030at 1374.176 kb on + strand, within ABIE40_RS07030at 1374.176 kb on + strand, within ABIE40_RS07030at 1374.176 kb on + strand, within ABIE40_RS07030at 1374.176 kb on + strand, within ABIE40_RS07030at 1374.177 kb on - strand, within ABIE40_RS07030at 1374.299 kb on + strand, within ABIE40_RS07030at 1374.300 kb on - strand, within ABIE40_RS07030at 1374.300 kb on - strand, within ABIE40_RS07030at 1374.300 kb on - strand, within ABIE40_RS07030at 1374.300 kb on - strand, within ABIE40_RS07030at 1374.300 kb on - strand, within ABIE40_RS07030at 1374.340 kb on + strand, within ABIE40_RS07030at 1374.373 kb on + strand, within ABIE40_RS07030at 1374.373 kb on + strand, within ABIE40_RS07030at 1374.374 kb on - strand, within ABIE40_RS07030at 1374.374 kb on - strand, within ABIE40_RS07030at 1374.517 kb on + strand, within ABIE40_RS07030at 1374.517 kb on + strand, within ABIE40_RS07030at 1374.650 kb on + strand, within ABIE40_RS07030at 1374.650 kb on + strand, within ABIE40_RS07030at 1374.650 kb on + strand, within ABIE40_RS07030at 1374.651 kb on - strand, within ABIE40_RS07030at 1374.728 kb on + strand, within ABIE40_RS07030at 1374.728 kb on + strand, within ABIE40_RS07030at 1374.729 kb on - strand, within ABIE40_RS07030at 1374.730 kb on + strand, within ABIE40_RS07030at 1374.731 kb on - strand, within ABIE40_RS07030at 1374.822 kb on + strand, within ABIE40_RS07030at 1374.822 kb on - strand, within ABIE40_RS07030at 1374.824 kb on - strand, within ABIE40_RS07030at 1374.884 kb on + strand, within ABIE40_RS07030at 1374.884 kb on + strand, within ABIE40_RS07030at 1374.885 kb on - strand, within ABIE40_RS07030at 1374.990 kb on + strand, within ABIE40_RS07030at 1374.991 kb on - strand, within ABIE40_RS07030at 1375.090 kb on + strandat 1375.090 kb on + strandat 1375.091 kb on - strandat 1375.091 kb on - strandat 1375.091 kb on - strandat 1375.091 kb on - strandat 1375.091 kb on - strandat 1375.091 kb on - strandat 1375.176 kb on - strandat 1375.314 kb on + strandat 1375.314 kb on + strandat 1375.314 kb on + strandat 1375.315 kb on - strandat 1375.538 kb on - strand, within ABIE40_RS07035at 1375.561 kb on - strand, within ABIE40_RS07035at 1375.590 kb on + strand, within ABIE40_RS07035at 1375.590 kb on + strand, within ABIE40_RS07035at 1375.591 kb on - strand, within ABIE40_RS07035at 1375.822 kb on + strand, within ABIE40_RS07035at 1375.822 kb on + strand, within ABIE40_RS07035at 1375.822 kb on + strand, within ABIE40_RS07035at 1375.823 kb on - strand, within ABIE40_RS07035at 1375.823 kb on - strand, within ABIE40_RS07035at 1375.823 kb on - strand, within ABIE40_RS07035at 1375.823 kb on - strand, within ABIE40_RS07035at 1375.823 kb on - strand, within ABIE40_RS07035at 1375.823 kb on - strand, within ABIE40_RS07035at 1375.839 kb on + strand, within ABIE40_RS07035at 1375.887 kb on + strand, within ABIE40_RS07035at 1375.887 kb on + strand, within ABIE40_RS07035at 1375.887 kb on + strand, within ABIE40_RS07035at 1375.887 kb on + strand, within ABIE40_RS07035at 1375.888 kb on - strand, within ABIE40_RS07035at 1375.888 kb on - strand, within ABIE40_RS07035at 1375.888 kb on - strand, within ABIE40_RS07035at 1375.971 kb on + strandat 1375.972 kb on - strandat 1375.981 kb on + strandat 1376.111 kb on + strand, within ABIE40_RS07040at 1376.156 kb on + strand, within ABIE40_RS07040at 1376.172 kb on - strand, within ABIE40_RS07040

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,372,335 + -0.0
1,372,335 + -0.1
1,372,335 + -0.4
1,372,336 - -0.6
1,372,362 + +0.4
1,372,363 - -1.1
1,372,491 + ABIE40_RS07025 0.19 +0.2
1,372,491 + ABIE40_RS07025 0.19 +1.0
1,372,491 + ABIE40_RS07025 0.19 -1.7
1,372,491 + ABIE40_RS07025 0.19 +1.3
1,372,491 + ABIE40_RS07025 0.19 -1.5
1,372,491 + ABIE40_RS07025 0.19 +0.2
1,372,491 + ABIE40_RS07025 0.19 +1.6
1,372,491 + ABIE40_RS07025 0.19 -1.2
1,372,492 - ABIE40_RS07025 0.19 -0.8
1,372,492 - ABIE40_RS07025 0.19 -1.0
1,372,492 - ABIE40_RS07025 0.19 -0.7
1,372,534 - ABIE40_RS07025 0.24 -3.1
1,372,809 + ABIE40_RS07025 0.56 -0.8
1,372,810 - ABIE40_RS07025 0.56 +0.5
1,372,810 - ABIE40_RS07025 0.56 +1.2
1,372,810 - ABIE40_RS07025 0.56 +1.6
1,372,923 + ABIE40_RS07025 0.70 +1.3
1,372,923 + ABIE40_RS07025 0.70 -1.5
1,372,924 - ABIE40_RS07025 0.70 -0.5
1,373,135 + -1.0
1,373,136 - +0.0
1,373,262 + +1.2
1,373,262 + +0.0
1,373,262 + -1.2
1,373,262 + -0.5
1,373,262 + -0.1
1,373,262 + -0.9
1,373,263 - -0.0
1,373,263 - +0.7
1,373,264 + -0.1
1,373,265 - -0.4
1,373,435 + -1.0
1,373,846 + ABIE40_RS07030 0.28 -0.5
1,373,846 + ABIE40_RS07030 0.28 +1.1
1,373,847 - ABIE40_RS07030 0.28 -0.1
1,373,950 + ABIE40_RS07030 0.33 +0.2
1,373,950 + ABIE40_RS07030 0.33 +0.3
1,373,950 + ABIE40_RS07030 0.33 +0.6
1,373,950 + ABIE40_RS07030 0.33 -0.4
1,373,950 + ABIE40_RS07030 0.33 +1.3
1,373,950 + ABIE40_RS07030 0.33 +1.7
1,373,950 + ABIE40_RS07030 0.33 +0.5
1,373,950 + ABIE40_RS07030 0.33 +1.1
1,373,950 + ABIE40_RS07030 0.33 -0.8
1,373,950 + ABIE40_RS07030 0.33 +4.0
1,373,950 + ABIE40_RS07030 0.33 -0.7
1,373,951 - ABIE40_RS07030 0.33 -0.8
1,373,951 - ABIE40_RS07030 0.33 +0.3
1,373,951 - ABIE40_RS07030 0.33 -0.8
1,373,951 - ABIE40_RS07030 0.33 -0.4
1,373,951 - ABIE40_RS07030 0.33 -0.7
1,373,951 - ABIE40_RS07030 0.33 +0.9
1,374,176 + ABIE40_RS07030 0.45 +1.0
1,374,176 + ABIE40_RS07030 0.45 -0.1
1,374,176 + ABIE40_RS07030 0.45 -0.7
1,374,176 + ABIE40_RS07030 0.45 -0.1
1,374,176 + ABIE40_RS07030 0.45 -0.3
1,374,177 - ABIE40_RS07030 0.45 -0.3
1,374,299 + ABIE40_RS07030 0.51 +0.2
1,374,300 - ABIE40_RS07030 0.51 -1.9
1,374,300 - ABIE40_RS07030 0.51 +0.5
1,374,300 - ABIE40_RS07030 0.51 -0.1
1,374,300 - ABIE40_RS07030 0.51 -1.5
1,374,300 - ABIE40_RS07030 0.51 -0.4
1,374,340 + ABIE40_RS07030 0.53 -1.4
1,374,373 + ABIE40_RS07030 0.55 +0.0
1,374,373 + ABIE40_RS07030 0.55 -0.2
1,374,374 - ABIE40_RS07030 0.55 -1.1
1,374,374 - ABIE40_RS07030 0.55 -2.3
1,374,517 + ABIE40_RS07030 0.62 -0.8
1,374,517 + ABIE40_RS07030 0.62 -1.6
1,374,650 + ABIE40_RS07030 0.68 +0.7
1,374,650 + ABIE40_RS07030 0.68 -3.1
1,374,650 + ABIE40_RS07030 0.68 -1.8
1,374,651 - ABIE40_RS07030 0.69 -0.0
1,374,728 + ABIE40_RS07030 0.72 +0.9
1,374,728 + ABIE40_RS07030 0.72 +0.6
1,374,729 - ABIE40_RS07030 0.72 -0.1
1,374,730 + ABIE40_RS07030 0.72 +1.0
1,374,731 - ABIE40_RS07030 0.73 +0.2
1,374,822 + ABIE40_RS07030 0.77 +0.0
1,374,822 - ABIE40_RS07030 0.77 -0.6
1,374,824 - ABIE40_RS07030 0.77 +0.1
1,374,884 + ABIE40_RS07030 0.80 -0.7
1,374,884 + ABIE40_RS07030 0.80 -0.2
1,374,885 - ABIE40_RS07030 0.80 -0.3
1,374,990 + ABIE40_RS07030 0.86 +0.8
1,374,991 - ABIE40_RS07030 0.86 -0.8
1,375,090 + +0.8
1,375,090 + +0.5
1,375,091 - -0.1
1,375,091 - -1.4
1,375,091 - +1.1
1,375,091 - +0.3
1,375,091 - +1.0
1,375,091 - +0.5
1,375,176 - -1.8
1,375,314 + -1.1
1,375,314 + -0.6
1,375,314 + +1.3
1,375,315 - -1.3
1,375,538 - ABIE40_RS07035 0.29 +0.9
1,375,561 - ABIE40_RS07035 0.33 -1.1
1,375,590 + ABIE40_RS07035 0.38 -0.5
1,375,590 + ABIE40_RS07035 0.38 +2.2
1,375,591 - ABIE40_RS07035 0.38 -0.2
1,375,822 + ABIE40_RS07035 0.75 +0.4
1,375,822 + ABIE40_RS07035 0.75 -0.4
1,375,822 + ABIE40_RS07035 0.75 -0.4
1,375,823 - ABIE40_RS07035 0.76 +0.7
1,375,823 - ABIE40_RS07035 0.76 +1.0
1,375,823 - ABIE40_RS07035 0.76 -0.1
1,375,823 - ABIE40_RS07035 0.76 -0.6
1,375,823 - ABIE40_RS07035 0.76 +0.9
1,375,823 - ABIE40_RS07035 0.76 +0.2
1,375,839 + ABIE40_RS07035 0.78 -0.6
1,375,887 + ABIE40_RS07035 0.86 +0.5
1,375,887 + ABIE40_RS07035 0.86 -0.4
1,375,887 + ABIE40_RS07035 0.86 +0.8
1,375,887 + ABIE40_RS07035 0.86 +1.2
1,375,888 - ABIE40_RS07035 0.86 +0.1
1,375,888 - ABIE40_RS07035 0.86 -1.7
1,375,888 - ABIE40_RS07035 0.86 +2.9
1,375,971 + -0.1
1,375,972 - -1.1
1,375,981 + -0.4
1,376,111 + ABIE40_RS07040 0.37 -1.2
1,376,156 + ABIE40_RS07040 0.50 -0.6
1,376,172 - ABIE40_RS07040 0.55 -1.1

Or see this region's nucleotide sequence