Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS06145

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS06135 and ABIE40_RS06140 overlap by 4 nucleotidesABIE40_RS06140 and ABIE40_RS06145 are separated by 26 nucleotidesABIE40_RS06145 and ABIE40_RS06150 are separated by 76 nucleotidesABIE40_RS06150 and ABIE40_RS06155 are separated by 15 nucleotides ABIE40_RS06135: ABIE40_RS06135 - tyrosine phosphatase family protein, at 1,204,733 to 1,205,263 _RS06135 ABIE40_RS06140: ABIE40_RS06140 - HD family hydrolase, at 1,205,260 to 1,205,832 _RS06140 ABIE40_RS06145: ABIE40_RS06145 - folate-binding protein YgfZ, at 1,205,859 to 1,206,698 _RS06145 ABIE40_RS06150: ABIE40_RS06150 - hypothetical protein, at 1,206,775 to 1,207,527 _RS06150 ABIE40_RS06155: ABIE40_RS06155 - hypothetical protein, at 1,207,543 to 1,207,800 _RS06155 Position (kb) 1205 1206 1207Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1205.116 kb on + strand, within ABIE40_RS06135at 1205.116 kb on + strand, within ABIE40_RS06135at 1205.116 kb on + strand, within ABIE40_RS06135at 1205.116 kb on + strand, within ABIE40_RS06135at 1205.116 kb on + strand, within ABIE40_RS06135at 1205.117 kb on - strand, within ABIE40_RS06135at 1205.117 kb on - strand, within ABIE40_RS06135at 1205.117 kb on - strand, within ABIE40_RS06135at 1205.117 kb on - strand, within ABIE40_RS06135at 1205.117 kb on - strand, within ABIE40_RS06135at 1205.117 kb on - strand, within ABIE40_RS06135at 1205.409 kb on + strand, within ABIE40_RS06140at 1205.410 kb on - strand, within ABIE40_RS06140at 1205.438 kb on + strand, within ABIE40_RS06140at 1205.604 kb on - strand, within ABIE40_RS06140at 1205.604 kb on - strand, within ABIE40_RS06140at 1206.163 kb on + strand, within ABIE40_RS06145at 1206.163 kb on + strand, within ABIE40_RS06145at 1206.163 kb on + strand, within ABIE40_RS06145at 1206.163 kb on + strand, within ABIE40_RS06145at 1206.164 kb on - strand, within ABIE40_RS06145at 1206.164 kb on - strand, within ABIE40_RS06145at 1206.164 kb on - strand, within ABIE40_RS06145at 1206.164 kb on - strand, within ABIE40_RS06145at 1206.164 kb on - strand, within ABIE40_RS06145at 1206.164 kb on - strand, within ABIE40_RS06145at 1206.164 kb on - strand, within ABIE40_RS06145at 1206.164 kb on - strand, within ABIE40_RS06145at 1206.164 kb on - strand, within ABIE40_RS06145at 1206.164 kb on - strand, within ABIE40_RS06145at 1206.286 kb on + strand, within ABIE40_RS06145at 1206.287 kb on - strand, within ABIE40_RS06145at 1206.287 kb on - strand, within ABIE40_RS06145at 1206.451 kb on + strand, within ABIE40_RS06145at 1206.451 kb on + strand, within ABIE40_RS06145at 1206.451 kb on + strand, within ABIE40_RS06145at 1206.451 kb on + strand, within ABIE40_RS06145at 1206.452 kb on - strand, within ABIE40_RS06145at 1206.452 kb on - strand, within ABIE40_RS06145at 1206.452 kb on - strand, within ABIE40_RS06145at 1206.452 kb on - strand, within ABIE40_RS06145at 1206.733 kb on + strandat 1206.734 kb on - strandat 1206.734 kb on - strandat 1206.734 kb on - strandat 1206.944 kb on + strand, within ABIE40_RS06150at 1206.944 kb on + strand, within ABIE40_RS06150at 1206.945 kb on - strand, within ABIE40_RS06150at 1206.956 kb on + strand, within ABIE40_RS06150at 1206.956 kb on + strand, within ABIE40_RS06150at 1206.956 kb on + strand, within ABIE40_RS06150at 1206.956 kb on + strand, within ABIE40_RS06150at 1206.957 kb on - strand, within ABIE40_RS06150at 1207.226 kb on + strand, within ABIE40_RS06150at 1207.226 kb on + strand, within ABIE40_RS06150at 1207.227 kb on - strand, within ABIE40_RS06150at 1207.227 kb on - strand, within ABIE40_RS06150at 1207.237 kb on + strand, within ABIE40_RS06150at 1207.237 kb on + strand, within ABIE40_RS06150at 1207.238 kb on - strand, within ABIE40_RS06150at 1207.468 kb on + strandat 1207.468 kb on + strandat 1207.469 kb on - strandat 1207.469 kb on - strandat 1207.544 kb on + strandat 1207.545 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,205,116 + ABIE40_RS06135 0.72 +0.3
1,205,116 + ABIE40_RS06135 0.72 -1.3
1,205,116 + ABIE40_RS06135 0.72 +0.9
1,205,116 + ABIE40_RS06135 0.72 -1.9
1,205,116 + ABIE40_RS06135 0.72 +0.5
1,205,117 - ABIE40_RS06135 0.72 -2.0
1,205,117 - ABIE40_RS06135 0.72 -0.8
1,205,117 - ABIE40_RS06135 0.72 -1.2
1,205,117 - ABIE40_RS06135 0.72 -0.5
1,205,117 - ABIE40_RS06135 0.72 +0.8
1,205,117 - ABIE40_RS06135 0.72 +0.1
1,205,409 + ABIE40_RS06140 0.26 -1.0
1,205,410 - ABIE40_RS06140 0.26 -0.7
1,205,438 + ABIE40_RS06140 0.31 -2.8
1,205,604 - ABIE40_RS06140 0.60 -0.4
1,205,604 - ABIE40_RS06140 0.60 +0.7
1,206,163 + ABIE40_RS06145 0.36 -1.1
1,206,163 + ABIE40_RS06145 0.36 +0.2
1,206,163 + ABIE40_RS06145 0.36 +1.2
1,206,163 + ABIE40_RS06145 0.36 +0.0
1,206,164 - ABIE40_RS06145 0.36 -0.1
1,206,164 - ABIE40_RS06145 0.36 -2.1
1,206,164 - ABIE40_RS06145 0.36 -0.5
1,206,164 - ABIE40_RS06145 0.36 -0.8
1,206,164 - ABIE40_RS06145 0.36 -1.1
1,206,164 - ABIE40_RS06145 0.36 -3.1
1,206,164 - ABIE40_RS06145 0.36 +1.5
1,206,164 - ABIE40_RS06145 0.36 -1.5
1,206,164 - ABIE40_RS06145 0.36 -1.8
1,206,164 - ABIE40_RS06145 0.36 -1.7
1,206,286 + ABIE40_RS06145 0.51 -0.1
1,206,287 - ABIE40_RS06145 0.51 -0.3
1,206,287 - ABIE40_RS06145 0.51 -2.3
1,206,451 + ABIE40_RS06145 0.70 +1.5
1,206,451 + ABIE40_RS06145 0.70 -1.0
1,206,451 + ABIE40_RS06145 0.70 -0.1
1,206,451 + ABIE40_RS06145 0.70 -2.2
1,206,452 - ABIE40_RS06145 0.71 -0.1
1,206,452 - ABIE40_RS06145 0.71 -0.1
1,206,452 - ABIE40_RS06145 0.71 -0.3
1,206,452 - ABIE40_RS06145 0.71 -1.6
1,206,733 + +0.5
1,206,734 - +0.5
1,206,734 - +0.0
1,206,734 - -1.5
1,206,944 + ABIE40_RS06150 0.22 -1.0
1,206,944 + ABIE40_RS06150 0.22 -0.8
1,206,945 - ABIE40_RS06150 0.23 -2.0
1,206,956 + ABIE40_RS06150 0.24 +0.2
1,206,956 + ABIE40_RS06150 0.24 -2.1
1,206,956 + ABIE40_RS06150 0.24 +0.2
1,206,956 + ABIE40_RS06150 0.24 -0.1
1,206,957 - ABIE40_RS06150 0.24 -1.0
1,207,226 + ABIE40_RS06150 0.60 -0.0
1,207,226 + ABIE40_RS06150 0.60 +0.9
1,207,227 - ABIE40_RS06150 0.60 +1.3
1,207,227 - ABIE40_RS06150 0.60 -1.2
1,207,237 + ABIE40_RS06150 0.61 -1.8
1,207,237 + ABIE40_RS06150 0.61 +2.5
1,207,238 - ABIE40_RS06150 0.61 +0.8
1,207,468 + -0.1
1,207,468 + +0.3
1,207,469 - -1.5
1,207,469 - -1.3
1,207,544 + -0.1
1,207,545 - -0.2

Or see this region's nucleotide sequence