Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28720 and ABID97_RS28725 are separated by 120 nucleotides ABID97_RS28725 and ABID97_RS28730 are separated by 52 nucleotides ABID97_RS28730 and ABID97_RS28735 overlap by 4 nucleotides ABID97_RS28735 and ABID97_RS28740 are separated by 91 nucleotides
ABID97_RS28720: ABID97_RS28720 - AraC family transcriptional regulator, at 660,973 to 661,935
_RS28720
ABID97_RS28725: ABID97_RS28725 - hypothetical protein, at 662,056 to 662,379
_RS28725
ABID97_RS28730: ABID97_RS28730 - PAS domain-containing sensor histidine kinase, at 662,432 to 663,580
_RS28730
ABID97_RS28735: ABID97_RS28735 - alpha/beta hydrolase, at 663,577 to 664,392
_RS28735
ABID97_RS28740: ABID97_RS28740 - NADH:flavin oxidoreductase/NADH oxidase, at 664,484 to 665,599
_RS28740
Position (kb) 662
663
664 Strain fitness (log2 ratio) -1
0
1 at 661.701 kb on - strand, within ABID97_RS28720 at 662.250 kb on - strand, within ABID97_RS28725 at 662.325 kb on - strand, within ABID97_RS28725 at 662.740 kb on - strand, within ABID97_RS28730 at 662.740 kb on - strand, within ABID97_RS28730 at 663.213 kb on + strand, within ABID97_RS28730 at 663.716 kb on + strand, within ABID97_RS28735 at 663.716 kb on + strand, within ABID97_RS28735 at 663.716 kb on + strand, within ABID97_RS28735 at 663.716 kb on + strand, within ABID97_RS28735 at 663.947 kb on + strand, within ABID97_RS28735 at 663.948 kb on - strand, within ABID97_RS28735 at 664.026 kb on - strand, within ABID97_RS28735 at 664.026 kb on - strand, within ABID97_RS28735 at 664.211 kb on + strand, within ABID97_RS28735
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 661,701 - ABID97_RS28720 0.76 -0.4 662,250 - ABID97_RS28725 0.60 -0.2 662,325 - ABID97_RS28725 0.83 +0.3 662,740 - ABID97_RS28730 0.27 +0.4 662,740 - ABID97_RS28730 0.27 +0.6 663,213 + ABID97_RS28730 0.68 +0.2 663,716 + ABID97_RS28735 0.17 +0.3 663,716 + ABID97_RS28735 0.17 +0.1 663,716 + ABID97_RS28735 0.17 +0.1 663,716 + ABID97_RS28735 0.17 +0.5 663,947 + ABID97_RS28735 0.45 +0.2 663,948 - ABID97_RS28735 0.45 -0.2 664,026 - ABID97_RS28735 0.55 +0.4 664,026 - ABID97_RS28735 0.55 +0.7 664,211 + ABID97_RS28735 0.78 +0.2
Or see this region's nucleotide sequence