Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25295

Experiment: Gly-Glu (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS25285 and ABID97_RS25290 are separated by 147 nucleotidesABID97_RS25290 and ABID97_RS25295 overlap by 4 nucleotidesABID97_RS25295 and ABID97_RS25300 are separated by 112 nucleotides ABID97_RS25285: ABID97_RS25285 - asparaginase, at 5,239,338 to 5,240,408 _RS25285 ABID97_RS25290: ABID97_RS25290 - TetR family transcriptional regulator C-terminal domain-containing protein, at 5,240,556 to 5,241,233 _RS25290 ABID97_RS25295: ABID97_RS25295 - LysR family transcriptional regulator, at 5,241,230 to 5,242,174 _RS25295 ABID97_RS25300: ABID97_RS25300 - MFS transporter, at 5,242,287 to 5,243,513 _RS25300 Position (kb) 5241 5242 5243Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5240.248 kb on + strand, within ABID97_RS25285at 5240.249 kb on - strand, within ABID97_RS25285at 5240.405 kb on - strandat 5240.405 kb on - strandat 5240.428 kb on + strandat 5240.458 kb on + strandat 5240.459 kb on - strandat 5240.520 kb on + strandat 5240.520 kb on + strandat 5240.521 kb on - strandat 5240.521 kb on - strandat 5240.767 kb on - strand, within ABID97_RS25290at 5240.767 kb on - strand, within ABID97_RS25290at 5240.767 kb on - strand, within ABID97_RS25290at 5240.769 kb on + strand, within ABID97_RS25290at 5240.769 kb on + strand, within ABID97_RS25290at 5240.769 kb on + strand, within ABID97_RS25290at 5240.769 kb on + strand, within ABID97_RS25290at 5240.769 kb on + strand, within ABID97_RS25290at 5240.769 kb on + strand, within ABID97_RS25290at 5240.770 kb on - strand, within ABID97_RS25290at 5240.770 kb on - strand, within ABID97_RS25290at 5240.794 kb on - strand, within ABID97_RS25290at 5240.883 kb on + strand, within ABID97_RS25290at 5240.883 kb on + strand, within ABID97_RS25290at 5240.883 kb on + strand, within ABID97_RS25290at 5240.884 kb on - strand, within ABID97_RS25290at 5240.884 kb on - strand, within ABID97_RS25290at 5240.980 kb on - strand, within ABID97_RS25290at 5240.980 kb on - strand, within ABID97_RS25290at 5240.980 kb on - strand, within ABID97_RS25290at 5241.108 kb on + strand, within ABID97_RS25290at 5241.109 kb on - strand, within ABID97_RS25290at 5241.109 kb on - strand, within ABID97_RS25290at 5241.125 kb on - strand, within ABID97_RS25290at 5241.231 kb on + strandat 5241.231 kb on + strandat 5241.232 kb on - strandat 5241.232 kb on - strandat 5241.232 kb on - strandat 5241.333 kb on + strand, within ABID97_RS25295at 5241.333 kb on + strand, within ABID97_RS25295at 5241.342 kb on + strand, within ABID97_RS25295at 5241.342 kb on + strand, within ABID97_RS25295at 5241.342 kb on + strand, within ABID97_RS25295at 5241.342 kb on + strand, within ABID97_RS25295at 5241.343 kb on - strand, within ABID97_RS25295at 5241.474 kb on + strand, within ABID97_RS25295at 5241.474 kb on + strand, within ABID97_RS25295at 5241.474 kb on + strand, within ABID97_RS25295at 5241.475 kb on - strand, within ABID97_RS25295at 5241.475 kb on - strand, within ABID97_RS25295at 5241.561 kb on + strand, within ABID97_RS25295at 5241.562 kb on - strand, within ABID97_RS25295at 5241.562 kb on - strand, within ABID97_RS25295at 5241.795 kb on + strand, within ABID97_RS25295at 5241.796 kb on - strand, within ABID97_RS25295at 5241.807 kb on + strand, within ABID97_RS25295at 5241.951 kb on + strand, within ABID97_RS25295at 5241.951 kb on + strand, within ABID97_RS25295at 5241.952 kb on - strand, within ABID97_RS25295at 5241.952 kb on - strand, within ABID97_RS25295at 5242.186 kb on + strandat 5242.187 kb on - strandat 5242.188 kb on + strandat 5242.188 kb on + strandat 5242.188 kb on + strandat 5242.200 kb on - strandat 5242.201 kb on + strandat 5242.201 kb on + strandat 5242.201 kb on + strandat 5242.269 kb on + strandat 5242.269 kb on + strandat 5242.269 kb on + strandat 5242.269 kb on + strandat 5242.270 kb on - strandat 5242.270 kb on - strandat 5242.279 kb on + strandat 5242.407 kb on + strandat 5242.408 kb on - strandat 5242.408 kb on - strandat 5242.408 kb on - strandat 5242.408 kb on - strandat 5242.410 kb on + strand, within ABID97_RS25300at 5242.411 kb on - strand, within ABID97_RS25300at 5242.411 kb on - strand, within ABID97_RS25300at 5242.500 kb on + strand, within ABID97_RS25300at 5242.501 kb on - strand, within ABID97_RS25300at 5242.912 kb on - strand, within ABID97_RS25300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
remove
5,240,248 + ABID97_RS25285 0.85 +0.1
5,240,249 - ABID97_RS25285 0.85 +3.3
5,240,405 - -0.1
5,240,405 - +0.1
5,240,428 + +0.4
5,240,458 + -0.4
5,240,459 - +0.4
5,240,520 + -0.5
5,240,520 + -2.1
5,240,521 - +0.1
5,240,521 - -0.5
5,240,767 - ABID97_RS25290 0.31 +0.4
5,240,767 - ABID97_RS25290 0.31 +0.1
5,240,767 - ABID97_RS25290 0.31 -0.1
5,240,769 + ABID97_RS25290 0.31 +0.3
5,240,769 + ABID97_RS25290 0.31 +0.0
5,240,769 + ABID97_RS25290 0.31 -0.9
5,240,769 + ABID97_RS25290 0.31 -0.2
5,240,769 + ABID97_RS25290 0.31 -0.9
5,240,769 + ABID97_RS25290 0.31 +1.2
5,240,770 - ABID97_RS25290 0.32 -0.1
5,240,770 - ABID97_RS25290 0.32 -0.8
5,240,794 - ABID97_RS25290 0.35 +0.1
5,240,883 + ABID97_RS25290 0.48 -0.6
5,240,883 + ABID97_RS25290 0.48 -0.2
5,240,883 + ABID97_RS25290 0.48 -0.7
5,240,884 - ABID97_RS25290 0.48 +0.3
5,240,884 - ABID97_RS25290 0.48 +0.4
5,240,980 - ABID97_RS25290 0.63 -0.1
5,240,980 - ABID97_RS25290 0.63 -0.7
5,240,980 - ABID97_RS25290 0.63 -0.2
5,241,108 + ABID97_RS25290 0.81 -2.6
5,241,109 - ABID97_RS25290 0.82 -0.4
5,241,109 - ABID97_RS25290 0.82 -0.4
5,241,125 - ABID97_RS25290 0.84 +0.3
5,241,231 + +0.2
5,241,231 + -1.4
5,241,232 - -0.1
5,241,232 - -0.3
5,241,232 - -0.5
5,241,333 + ABID97_RS25295 0.11 -0.8
5,241,333 + ABID97_RS25295 0.11 +0.0
5,241,342 + ABID97_RS25295 0.12 -0.3
5,241,342 + ABID97_RS25295 0.12 -0.0
5,241,342 + ABID97_RS25295 0.12 +1.3
5,241,342 + ABID97_RS25295 0.12 -1.4
5,241,343 - ABID97_RS25295 0.12 -0.1
5,241,474 + ABID97_RS25295 0.26 -0.0
5,241,474 + ABID97_RS25295 0.26 -0.7
5,241,474 + ABID97_RS25295 0.26 -0.9
5,241,475 - ABID97_RS25295 0.26 -0.1
5,241,475 - ABID97_RS25295 0.26 +0.0
5,241,561 + ABID97_RS25295 0.35 +0.3
5,241,562 - ABID97_RS25295 0.35 -0.5
5,241,562 - ABID97_RS25295 0.35 -0.4
5,241,795 + ABID97_RS25295 0.60 -0.4
5,241,796 - ABID97_RS25295 0.60 -0.7
5,241,807 + ABID97_RS25295 0.61 +0.3
5,241,951 + ABID97_RS25295 0.76 +1.0
5,241,951 + ABID97_RS25295 0.76 +0.2
5,241,952 - ABID97_RS25295 0.76 -0.9
5,241,952 - ABID97_RS25295 0.76 +0.7
5,242,186 + +0.4
5,242,187 - +0.2
5,242,188 + +0.7
5,242,188 + -0.5
5,242,188 + -0.1
5,242,200 - +0.6
5,242,201 + +1.3
5,242,201 + -0.1
5,242,201 + -0.0
5,242,269 + +0.5
5,242,269 + -1.9
5,242,269 + -0.3
5,242,269 + -0.5
5,242,270 - +0.3
5,242,270 - -0.0
5,242,279 + -0.3
5,242,407 + -0.4
5,242,408 - -1.5
5,242,408 - +0.2
5,242,408 - -0.6
5,242,408 - -0.3
5,242,410 + ABID97_RS25300 0.10 -0.9
5,242,411 - ABID97_RS25300 0.10 -0.3
5,242,411 - ABID97_RS25300 0.10 -0.4
5,242,500 + ABID97_RS25300 0.17 -1.5
5,242,501 - ABID97_RS25300 0.17 -1.0
5,242,912 - ABID97_RS25300 0.51 -1.5

Or see this region's nucleotide sequence