Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24760 and ABID97_RS24765 overlap by 4 nucleotides ABID97_RS24765 and ABID97_RS24770 are separated by 25 nucleotides
ABID97_RS24760: ABID97_RS24760 - sugar ABC transporter ATP-binding protein, at 5,132,003 to 5,133,634
_RS24760
ABID97_RS24765: ABID97_RS24765 - ABC transporter permease, at 5,133,631 to 5,134,626
_RS24765
ABID97_RS24770: ABID97_RS24770 - LacI family DNA-binding transcriptional regulator, at 5,134,652 to 5,135,743
_RS24770
Position (kb) 5133
5134
5135 Strain fitness (log2 ratio) -2
-1
0
1 at 5133.368 kb on + strand, within ABID97_RS24760 at 5133.369 kb on - strand, within ABID97_RS24760 at 5133.649 kb on - strand at 5133.649 kb on - strand at 5133.703 kb on + strand at 5133.703 kb on + strand at 5133.704 kb on - strand at 5133.704 kb on - strand at 5133.704 kb on - strand at 5133.764 kb on - strand, within ABID97_RS24765 at 5134.075 kb on + strand, within ABID97_RS24765 at 5134.102 kb on + strand, within ABID97_RS24765 at 5134.103 kb on - strand, within ABID97_RS24765 at 5134.103 kb on - strand, within ABID97_RS24765 at 5134.103 kb on - strand, within ABID97_RS24765 at 5134.149 kb on + strand, within ABID97_RS24765 at 5134.784 kb on + strand, within ABID97_RS24770 at 5134.785 kb on - strand, within ABID97_RS24770 at 5134.785 kb on - strand, within ABID97_RS24770 at 5134.785 kb on - strand, within ABID97_RS24770 at 5134.785 kb on - strand, within ABID97_RS24770 at 5134.868 kb on + strand, within ABID97_RS24770 at 5134.868 kb on + strand, within ABID97_RS24770 at 5134.868 kb on + strand, within ABID97_RS24770 at 5134.869 kb on - strand, within ABID97_RS24770 at 5134.970 kb on + strand, within ABID97_RS24770 at 5134.970 kb on + strand, within ABID97_RS24770 at 5135.468 kb on - strand, within ABID97_RS24770 at 5135.468 kb on - strand, within ABID97_RS24770 at 5135.468 kb on - strand, within ABID97_RS24770
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 5,133,368 + ABID97_RS24760 0.84 +0.2 5,133,369 - ABID97_RS24760 0.84 +0.7 5,133,649 - -0.1 5,133,649 - +0.0 5,133,703 + +0.1 5,133,703 + +0.8 5,133,704 - +0.0 5,133,704 - +0.6 5,133,704 - -0.0 5,133,764 - ABID97_RS24765 0.13 +0.2 5,134,075 + ABID97_RS24765 0.45 -0.0 5,134,102 + ABID97_RS24765 0.47 +0.1 5,134,103 - ABID97_RS24765 0.47 +1.1 5,134,103 - ABID97_RS24765 0.47 +0.0 5,134,103 - ABID97_RS24765 0.47 -0.3 5,134,149 + ABID97_RS24765 0.52 -0.3 5,134,784 + ABID97_RS24770 0.12 -1.1 5,134,785 - ABID97_RS24770 0.12 +0.2 5,134,785 - ABID97_RS24770 0.12 -1.2 5,134,785 - ABID97_RS24770 0.12 +0.4 5,134,785 - ABID97_RS24770 0.12 -0.8 5,134,868 + ABID97_RS24770 0.20 -1.1 5,134,868 + ABID97_RS24770 0.20 -1.3 5,134,868 + ABID97_RS24770 0.20 -1.7 5,134,869 - ABID97_RS24770 0.20 -1.2 5,134,970 + ABID97_RS24770 0.29 -1.8 5,134,970 + ABID97_RS24770 0.29 -2.1 5,135,468 - ABID97_RS24770 0.75 -0.5 5,135,468 - ABID97_RS24770 0.75 -0.8 5,135,468 - ABID97_RS24770 0.75 -1.7
Or see this region's nucleotide sequence