Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18805

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18795 and ABID97_RS18800 are separated by 51 nucleotidesABID97_RS18800 and ABID97_RS18805 are separated by 183 nucleotidesABID97_RS18805 and ABID97_RS18810 are separated by 4 nucleotides ABID97_RS18795: ABID97_RS18795 - hypothetical protein, at 3,871,872 to 3,872,372 _RS18795 ABID97_RS18800: ABID97_RS18800 - hypothetical protein, at 3,872,424 to 3,872,615 _RS18800 ABID97_RS18805: ABID97_RS18805 - FAD-dependent oxidoreductase, at 3,872,799 to 3,874,472 _RS18805 ABID97_RS18810: ABID97_RS18810 - cupin domain-containing protein, at 3,874,477 to 3,875,553 _RS18810 Position (kb) 3872 3873 3874 3875Strain fitness (log2 ratio) -1 0 1at 3871.803 kb on + strandat 3871.804 kb on - strandat 3871.808 kb on + strandat 3872.375 kb on - strandat 3872.425 kb on + strandat 3872.426 kb on - strandat 3872.435 kb on - strandat 3872.788 kb on - strandat 3873.670 kb on - strand, within ABID97_RS18805at 3873.828 kb on + strand, within ABID97_RS18805at 3874.038 kb on + strand, within ABID97_RS18805at 3874.314 kb on + strandat 3874.931 kb on - strand, within ABID97_RS18810at 3874.931 kb on - strand, within ABID97_RS18810at 3875.326 kb on + strand, within ABID97_RS18810at 3875.330 kb on - strand, within ABID97_RS18810

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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3,871,803 + +0.5
3,871,804 - +0.3
3,871,808 + +0.0
3,872,375 - -0.0
3,872,425 + +0.5
3,872,426 - +0.2
3,872,435 - +0.4
3,872,788 - +0.5
3,873,670 - ABID97_RS18805 0.52 +0.6
3,873,828 + ABID97_RS18805 0.61 +0.8
3,874,038 + ABID97_RS18805 0.74 +1.7
3,874,314 + +0.2
3,874,931 - ABID97_RS18810 0.42 -0.3
3,874,931 - ABID97_RS18810 0.42 -0.2
3,875,326 + ABID97_RS18810 0.79 +0.3
3,875,330 - ABID97_RS18810 0.79 -0.1

Or see this region's nucleotide sequence