Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18795 and ABID97_RS18800 are separated by 51 nucleotides ABID97_RS18800 and ABID97_RS18805 are separated by 183 nucleotides ABID97_RS18805 and ABID97_RS18810 are separated by 4 nucleotides
ABID97_RS18795: ABID97_RS18795 - hypothetical protein, at 3,871,872 to 3,872,372
_RS18795
ABID97_RS18800: ABID97_RS18800 - hypothetical protein, at 3,872,424 to 3,872,615
_RS18800
ABID97_RS18805: ABID97_RS18805 - FAD-dependent oxidoreductase, at 3,872,799 to 3,874,472
_RS18805
ABID97_RS18810: ABID97_RS18810 - cupin domain-containing protein, at 3,874,477 to 3,875,553
_RS18810
Position (kb)
3872
3873
3874
3875 Strain fitness (log2 ratio)
-1
0
1 at 3871.803 kb on + strand at 3871.804 kb on - strand at 3871.808 kb on + strand at 3872.375 kb on - strand at 3872.425 kb on + strand at 3872.426 kb on - strand at 3872.435 kb on - strand at 3872.788 kb on - strand at 3873.670 kb on - strand, within ABID97_RS18805 at 3873.828 kb on + strand, within ABID97_RS18805 at 3874.038 kb on + strand, within ABID97_RS18805 at 3874.314 kb on + strand at 3874.931 kb on - strand, within ABID97_RS18810 at 3874.931 kb on - strand, within ABID97_RS18810 at 3875.326 kb on + strand, within ABID97_RS18810 at 3875.330 kb on - strand, within ABID97_RS18810
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 3,871,803 + +0.5 3,871,804 - +0.3 3,871,808 + +0.0 3,872,375 - -0.0 3,872,425 + +0.5 3,872,426 - +0.2 3,872,435 - +0.4 3,872,788 - +0.5 3,873,670 - ABID97_RS18805 0.52 +0.6 3,873,828 + ABID97_RS18805 0.61 +0.8 3,874,038 + ABID97_RS18805 0.74 +1.7 3,874,314 + +0.2 3,874,931 - ABID97_RS18810 0.42 -0.3 3,874,931 - ABID97_RS18810 0.42 -0.2 3,875,326 + ABID97_RS18810 0.79 +0.3 3,875,330 - ABID97_RS18810 0.79 -0.1
Or see this region's nucleotide sequence