Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09230 and ABID97_RS09235 are separated by 19 nucleotides ABID97_RS09235 and ABID97_RS09240 are separated by 4 nucleotides ABID97_RS09240 and ABID97_RS09245 overlap by 4 nucleotides ABID97_RS09245 and ABID97_RS09250 are separated by 4 nucleotides
ABID97_RS09230: ABID97_RS09230 - XRE family transcriptional regulator, at 1,941,264 to 1,941,941
_RS09230
ABID97_RS09235: ABID97_RS09235 - DUF3299 domain-containing protein, at 1,941,961 to 1,942,599
_RS09235
ABID97_RS09240: ABID97_RS09240 - FtsX-like permease family protein, at 1,942,604 to 1,943,866
_RS09240
ABID97_RS09245: ABID97_RS09245 - ABC transporter ATP-binding protein, at 1,943,863 to 1,944,597
_RS09245
ABID97_RS09250: ABID97_RS09250 - DUF2796 domain-containing protein, at 1,944,602 to 1,945,183
_RS09250
Position (kb)
1942
1943
1944 Strain fitness (log2 ratio)
-2
-1
0
1 at 1941.607 kb on - strand, within ABID97_RS09230 at 1941.696 kb on + strand, within ABID97_RS09230 at 1941.696 kb on + strand, within ABID97_RS09230 at 1941.726 kb on + strand, within ABID97_RS09230 at 1941.726 kb on + strand, within ABID97_RS09230 at 1941.727 kb on - strand, within ABID97_RS09230 at 1941.727 kb on - strand, within ABID97_RS09230 at 1941.727 kb on - strand, within ABID97_RS09230 at 1941.802 kb on - strand, within ABID97_RS09230 at 1941.829 kb on - strand, within ABID97_RS09230 at 1941.829 kb on - strand, within ABID97_RS09230 at 1941.962 kb on + strand at 1941.962 kb on + strand at 1941.962 kb on + strand at 1941.963 kb on - strand at 1941.963 kb on - strand at 1941.981 kb on - strand at 1942.723 kb on + strand at 1943.079 kb on + strand, within ABID97_RS09240 at 1943.079 kb on + strand, within ABID97_RS09240 at 1943.080 kb on - strand, within ABID97_RS09240 at 1943.508 kb on + strand, within ABID97_RS09240 at 1943.658 kb on + strand, within ABID97_RS09240 at 1944.302 kb on + strand, within ABID97_RS09245
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 1,941,607 - ABID97_RS09230 0.51 +0.4 1,941,696 + ABID97_RS09230 0.64 -0.1 1,941,696 + ABID97_RS09230 0.64 -0.1 1,941,726 + ABID97_RS09230 0.68 -0.5 1,941,726 + ABID97_RS09230 0.68 -0.3 1,941,727 - ABID97_RS09230 0.68 +0.2 1,941,727 - ABID97_RS09230 0.68 -0.6 1,941,727 - ABID97_RS09230 0.68 -1.1 1,941,802 - ABID97_RS09230 0.79 -0.7 1,941,829 - ABID97_RS09230 0.83 +0.6 1,941,829 - ABID97_RS09230 0.83 +0.5 1,941,962 + -0.1 1,941,962 + +0.1 1,941,962 + +0.5 1,941,963 - -0.7 1,941,963 - +0.6 1,941,981 - -1.1 1,942,723 + -1.1 1,943,079 + ABID97_RS09240 0.38 -1.8 1,943,079 + ABID97_RS09240 0.38 -2.1 1,943,080 - ABID97_RS09240 0.38 -1.0 1,943,508 + ABID97_RS09240 0.72 -1.7 1,943,658 + ABID97_RS09240 0.83 -0.5 1,944,302 + ABID97_RS09245 0.60 -0.0
Or see this region's nucleotide sequence