Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03820

Experiment: Gly-Glu (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03815 and ABID97_RS03820 are separated by 4 nucleotidesABID97_RS03820 and ABID97_RS03825 overlap by 4 nucleotides ABID97_RS03815: ABID97_RS03815 - NAD(P)/FAD-dependent oxidoreductase, at 781,493 to 783,136 _RS03815 ABID97_RS03820: ABID97_RS03820 - beta-ketoacyl synthase chain length factor, at 783,141 to 783,986 _RS03820 ABID97_RS03825: ABID97_RS03825 - beta-ketoacyl-[acyl-carrier-protein] synthase family protein, at 783,983 to 785,185 _RS03825 Position (kb) 783 784Strain fitness (log2 ratio) -1 0 1 2at 782.142 kb on + strand, within ABID97_RS03815at 782.295 kb on + strand, within ABID97_RS03815at 782.772 kb on + strand, within ABID97_RS03815at 782.772 kb on + strand, within ABID97_RS03815at 782.772 kb on + strand, within ABID97_RS03815at 782.773 kb on - strand, within ABID97_RS03815at 782.773 kb on - strand, within ABID97_RS03815at 782.773 kb on - strand, within ABID97_RS03815at 782.773 kb on - strand, within ABID97_RS03815at 782.802 kb on + strand, within ABID97_RS03815at 782.802 kb on + strand, within ABID97_RS03815at 782.820 kb on + strand, within ABID97_RS03815at 782.949 kb on + strand, within ABID97_RS03815at 782.949 kb on + strand, within ABID97_RS03815at 783.142 kb on + strandat 783.142 kb on + strandat 783.143 kb on - strandat 783.463 kb on + strand, within ABID97_RS03820at 783.615 kb on + strand, within ABID97_RS03820at 783.679 kb on + strand, within ABID97_RS03820at 783.679 kb on + strand, within ABID97_RS03820at 783.679 kb on + strand, within ABID97_RS03820at 783.680 kb on - strand, within ABID97_RS03820at 783.680 kb on - strand, within ABID97_RS03820at 783.946 kb on + strandat 783.947 kb on - strandat 784.317 kb on + strand, within ABID97_RS03825at 784.317 kb on + strand, within ABID97_RS03825at 784.318 kb on - strand, within ABID97_RS03825at 784.318 kb on - strand, within ABID97_RS03825at 784.318 kb on - strand, within ABID97_RS03825at 784.440 kb on + strand, within ABID97_RS03825at 784.896 kb on + strand, within ABID97_RS03825

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Per-strain Table

Position Strand Gene LocusTag Fraction Gly-Glu (C)
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782,142 + ABID97_RS03815 0.39 +0.1
782,295 + ABID97_RS03815 0.49 -0.3
782,772 + ABID97_RS03815 0.78 +0.1
782,772 + ABID97_RS03815 0.78 -0.5
782,772 + ABID97_RS03815 0.78 -0.3
782,773 - ABID97_RS03815 0.78 +0.7
782,773 - ABID97_RS03815 0.78 -0.1
782,773 - ABID97_RS03815 0.78 +0.1
782,773 - ABID97_RS03815 0.78 -0.5
782,802 + ABID97_RS03815 0.80 +0.5
782,802 + ABID97_RS03815 0.80 +0.1
782,820 + ABID97_RS03815 0.81 +1.0
782,949 + ABID97_RS03815 0.89 -0.2
782,949 + ABID97_RS03815 0.89 +1.0
783,142 + -0.3
783,142 + +0.3
783,143 - -0.0
783,463 + ABID97_RS03820 0.38 -0.9
783,615 + ABID97_RS03820 0.56 +0.2
783,679 + ABID97_RS03820 0.64 +1.9
783,679 + ABID97_RS03820 0.64 +0.7
783,679 + ABID97_RS03820 0.64 +0.1
783,680 - ABID97_RS03820 0.64 +0.7
783,680 - ABID97_RS03820 0.64 +0.3
783,946 + +0.1
783,947 - +0.1
784,317 + ABID97_RS03825 0.28 +0.3
784,317 + ABID97_RS03825 0.28 +0.3
784,318 - ABID97_RS03825 0.28 -0.9
784,318 - ABID97_RS03825 0.28 +0.1
784,318 - ABID97_RS03825 0.28 +2.7
784,440 + ABID97_RS03825 0.38 +0.6
784,896 + ABID97_RS03825 0.76 +0.9

Or see this region's nucleotide sequence