Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00205 and ABID97_RS00210 overlap by 11 nucleotides ABID97_RS00210 and ABID97_RS00215 overlap by 4 nucleotides ABID97_RS00215 and ABID97_RS00220 are separated by 21 nucleotides ABID97_RS00220 and ABID97_RS00225 are separated by 132 nucleotides
ABID97_RS00205: ABID97_RS00205 - hypothetical protein, at 48,007 to 48,738
_RS00205
ABID97_RS00210: ABID97_RS00210 - stage II sporulation protein M, at 48,728 to 49,720
_RS00210
ABID97_RS00215: ABID97_RS00215 - RDD family protein, at 49,717 to 50,439
_RS00215
ABID97_RS00220: ABID97_RS00220 - RDD family protein, at 50,461 to 50,976
_RS00220
ABID97_RS00225: ABID97_RS00225 - DUF2242 domain-containing protein, at 51,109 to 51,837
_RS00225
Position (kb) 49
50
51 Strain fitness (log2 ratio) -1
0
1 at 48.793 kb on - strand at 48.831 kb on + strand, within ABID97_RS00210 at 48.831 kb on + strand, within ABID97_RS00210 at 48.832 kb on - strand, within ABID97_RS00210 at 48.832 kb on - strand, within ABID97_RS00210 at 48.832 kb on - strand, within ABID97_RS00210 at 48.915 kb on + strand, within ABID97_RS00210 at 49.104 kb on + strand, within ABID97_RS00210 at 49.105 kb on - strand, within ABID97_RS00210 at 49.221 kb on + strand, within ABID97_RS00210 at 49.221 kb on + strand, within ABID97_RS00210 at 49.221 kb on + strand, within ABID97_RS00210 at 49.221 kb on + strand, within ABID97_RS00210 at 49.221 kb on + strand, within ABID97_RS00210 at 49.222 kb on - strand, within ABID97_RS00210 at 49.222 kb on - strand, within ABID97_RS00210 at 49.222 kb on - strand, within ABID97_RS00210 at 49.222 kb on - strand, within ABID97_RS00210 at 49.222 kb on - strand, within ABID97_RS00210 at 49.222 kb on - strand, within ABID97_RS00210 at 49.225 kb on - strand, within ABID97_RS00210 at 49.290 kb on + strand, within ABID97_RS00210 at 49.290 kb on + strand, within ABID97_RS00210 at 49.290 kb on + strand, within ABID97_RS00210 at 49.290 kb on + strand, within ABID97_RS00210 at 49.290 kb on + strand, within ABID97_RS00210 at 49.290 kb on + strand, within ABID97_RS00210 at 49.291 kb on - strand, within ABID97_RS00210 at 49.291 kb on - strand, within ABID97_RS00210 at 49.291 kb on - strand, within ABID97_RS00210 at 49.357 kb on - strand, within ABID97_RS00210 at 49.486 kb on - strand, within ABID97_RS00210 at 49.605 kb on + strand, within ABID97_RS00210 at 50.075 kb on + strand, within ABID97_RS00215 at 50.228 kb on + strand, within ABID97_RS00215 at 50.228 kb on + strand, within ABID97_RS00215 at 50.249 kb on + strand, within ABID97_RS00215 at 50.249 kb on + strand, within ABID97_RS00215 at 50.250 kb on - strand, within ABID97_RS00215 at 50.250 kb on - strand, within ABID97_RS00215 at 50.250 kb on - strand, within ABID97_RS00215 at 50.348 kb on + strand, within ABID97_RS00215 at 50.349 kb on - strand, within ABID97_RS00215 at 50.598 kb on - strand, within ABID97_RS00220 at 50.598 kb on - strand, within ABID97_RS00220 at 50.598 kb on - strand, within ABID97_RS00220 at 50.705 kb on + strand, within ABID97_RS00220 at 50.705 kb on + strand, within ABID97_RS00220 at 50.706 kb on - strand, within ABID97_RS00220 at 50.740 kb on - strand, within ABID97_RS00220 at 50.854 kb on + strand, within ABID97_RS00220 at 50.854 kb on + strand, within ABID97_RS00220 at 50.854 kb on + strand, within ABID97_RS00220 at 50.863 kb on + strand, within ABID97_RS00220 at 50.863 kb on + strand, within ABID97_RS00220 at 50.864 kb on - strand, within ABID97_RS00220 at 50.864 kb on - strand, within ABID97_RS00220 at 51.011 kb on + strand at 51.011 kb on + strand at 51.011 kb on + strand at 51.012 kb on - strand at 51.012 kb on - strand at 51.012 kb on - strand at 51.015 kb on - strand at 51.015 kb on - strand at 51.015 kb on - strand at 51.031 kb on + strand at 51.032 kb on - strand at 51.041 kb on - strand at 51.140 kb on + strand at 51.141 kb on - strand at 51.282 kb on - strand, within ABID97_RS00225 at 51.282 kb on - strand, within ABID97_RS00225 at 51.413 kb on + strand, within ABID97_RS00225
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 48,793 - +0.6 48,831 + ABID97_RS00210 0.10 -0.0 48,831 + ABID97_RS00210 0.10 +0.6 48,832 - ABID97_RS00210 0.10 +0.0 48,832 - ABID97_RS00210 0.10 -0.0 48,832 - ABID97_RS00210 0.10 -0.2 48,915 + ABID97_RS00210 0.19 +0.8 49,104 + ABID97_RS00210 0.38 +0.3 49,105 - ABID97_RS00210 0.38 +0.1 49,221 + ABID97_RS00210 0.50 +1.4 49,221 + ABID97_RS00210 0.50 +0.4 49,221 + ABID97_RS00210 0.50 -0.0 49,221 + ABID97_RS00210 0.50 -0.5 49,221 + ABID97_RS00210 0.50 -0.4 49,222 - ABID97_RS00210 0.50 -0.1 49,222 - ABID97_RS00210 0.50 +0.1 49,222 - ABID97_RS00210 0.50 -0.2 49,222 - ABID97_RS00210 0.50 +0.3 49,222 - ABID97_RS00210 0.50 -0.0 49,222 - ABID97_RS00210 0.50 +0.8 49,225 - ABID97_RS00210 0.50 +1.0 49,290 + ABID97_RS00210 0.57 +0.3 49,290 + ABID97_RS00210 0.57 +0.2 49,290 + ABID97_RS00210 0.57 +0.2 49,290 + ABID97_RS00210 0.57 +0.1 49,290 + ABID97_RS00210 0.57 -0.3 49,290 + ABID97_RS00210 0.57 -0.4 49,291 - ABID97_RS00210 0.57 -0.2 49,291 - ABID97_RS00210 0.57 +1.2 49,291 - ABID97_RS00210 0.57 -0.2 49,357 - ABID97_RS00210 0.63 +0.1 49,486 - ABID97_RS00210 0.76 -0.8 49,605 + ABID97_RS00210 0.88 +0.3 50,075 + ABID97_RS00215 0.50 -1.2 50,228 + ABID97_RS00215 0.71 +0.2 50,228 + ABID97_RS00215 0.71 -0.1 50,249 + ABID97_RS00215 0.74 +0.2 50,249 + ABID97_RS00215 0.74 -0.1 50,250 - ABID97_RS00215 0.74 -0.1 50,250 - ABID97_RS00215 0.74 +0.5 50,250 - ABID97_RS00215 0.74 -0.6 50,348 + ABID97_RS00215 0.87 -1.6 50,349 - ABID97_RS00215 0.87 -0.2 50,598 - ABID97_RS00220 0.27 +0.2 50,598 - ABID97_RS00220 0.27 -0.0 50,598 - ABID97_RS00220 0.27 +0.5 50,705 + ABID97_RS00220 0.47 -0.1 50,705 + ABID97_RS00220 0.47 +0.2 50,706 - ABID97_RS00220 0.47 +0.0 50,740 - ABID97_RS00220 0.54 +0.2 50,854 + ABID97_RS00220 0.76 -0.1 50,854 + ABID97_RS00220 0.76 +0.1 50,854 + ABID97_RS00220 0.76 -0.6 50,863 + ABID97_RS00220 0.78 -0.7 50,863 + ABID97_RS00220 0.78 -0.2 50,864 - ABID97_RS00220 0.78 +0.3 50,864 - ABID97_RS00220 0.78 -0.1 51,011 + +0.9 51,011 + +1.2 51,011 + -0.2 51,012 - -0.4 51,012 - -0.2 51,012 - -0.6 51,015 - +0.1 51,015 - -0.6 51,015 - -0.7 51,031 + -0.1 51,032 - +0.1 51,041 - +0.3 51,140 + -1.2 51,141 - -0.2 51,282 - ABID97_RS00225 0.24 +0.5 51,282 - ABID97_RS00225 0.24 -0.1 51,413 + ABID97_RS00225 0.42 -0.5
Or see this region's nucleotide sequence