Experiment: KB with Tetracycline 0.0015 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4628 and Psyr_4629 overlap by 1 nucleotides Psyr_4629 and Psyr_4630 are separated by 23 nucleotides Psyr_4630 and Psyr_4631 are separated by 287 nucleotides
Psyr_4628: Psyr_4628 - Protein of unknown function DUF525, at 5,488,538 to 5,488,939
_4628
Psyr_4629: Psyr_4629 - Bis(5'-nucleosyl)-tetraphosphatase (symmetrical), at 5,488,939 to 5,489,814
_4629
Psyr_4630: Psyr_4630 - thiosulfate sulfurtransferase, at 5,489,838 to 5,490,158
_4630
Psyr_4631: Psyr_4631 - PrkA serine kinase, at 5,490,446 to 5,492,368
_4631
Position (kb) 5489
5490
5491 Strain fitness (log2 ratio) -1
0
1
2
3 at 5488.856 kb on + strand, within Psyr_4628 at 5488.856 kb on + strand, within Psyr_4628 at 5490.064 kb on - strand, within Psyr_4630 at 5490.093 kb on + strand, within Psyr_4630 at 5490.093 kb on + strand, within Psyr_4630 at 5490.093 kb on + strand, within Psyr_4630 at 5490.093 kb on + strand, within Psyr_4630 at 5490.093 kb on + strand, within Psyr_4630 at 5490.093 kb on + strand, within Psyr_4630 at 5490.094 kb on - strand, within Psyr_4630 at 5490.159 kb on + strand at 5490.194 kb on + strand at 5490.195 kb on - strand at 5490.254 kb on + strand at 5490.273 kb on + strand at 5490.273 kb on + strand at 5490.274 kb on - strand at 5490.274 kb on - strand at 5490.274 kb on - strand at 5490.274 kb on - strand at 5490.274 kb on - strand at 5490.280 kb on - strand at 5490.285 kb on - strand at 5490.337 kb on - strand at 5490.340 kb on + strand at 5490.346 kb on + strand at 5490.375 kb on + strand at 5490.375 kb on + strand at 5490.375 kb on + strand at 5490.375 kb on + strand at 5490.376 kb on - strand at 5490.376 kb on - strand at 5490.376 kb on - strand at 5490.378 kb on + strand at 5490.378 kb on + strand at 5490.378 kb on + strand at 5490.379 kb on - strand at 5490.379 kb on - strand at 5490.379 kb on - strand at 5490.381 kb on + strand at 5490.382 kb on - strand at 5490.382 kb on - strand at 5490.451 kb on + strand at 5490.451 kb on + strand at 5490.451 kb on + strand at 5490.451 kb on + strand at 5490.451 kb on + strand at 5490.451 kb on + strand at 5490.452 kb on - strand at 5490.452 kb on - strand at 5490.452 kb on - strand at 5490.453 kb on + strand at 5490.453 kb on + strand at 5490.454 kb on - strand at 5490.454 kb on - strand at 5490.454 kb on - strand at 5490.454 kb on - strand at 5490.454 kb on - strand at 5490.515 kb on + strand at 5490.516 kb on - strand at 5490.548 kb on + strand at 5490.604 kb on + strand at 5490.604 kb on + strand at 5490.605 kb on - strand at 5490.651 kb on + strand, within Psyr_4631 at 5490.652 kb on - strand, within Psyr_4631 at 5490.764 kb on + strand, within Psyr_4631 at 5490.764 kb on + strand, within Psyr_4631 at 5490.764 kb on + strand, within Psyr_4631 at 5490.842 kb on + strand, within Psyr_4631 at 5490.842 kb on + strand, within Psyr_4631 at 5490.843 kb on - strand, within Psyr_4631 at 5490.843 kb on - strand, within Psyr_4631 at 5490.843 kb on - strand, within Psyr_4631 at 5490.843 kb on - strand, within Psyr_4631 at 5490.944 kb on + strand, within Psyr_4631 at 5490.944 kb on + strand, within Psyr_4631 at 5490.945 kb on - strand, within Psyr_4631
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Tetracycline 0.0015 ug/ml remove 5,488,856 + Psyr_4628 0.79 +0.5 5,488,856 + Psyr_4628 0.79 -0.0 5,490,064 - Psyr_4630 0.70 -0.3 5,490,093 + Psyr_4630 0.79 -0.1 5,490,093 + Psyr_4630 0.79 +0.2 5,490,093 + Psyr_4630 0.79 -0.0 5,490,093 + Psyr_4630 0.79 +0.0 5,490,093 + Psyr_4630 0.79 +0.1 5,490,093 + Psyr_4630 0.79 +0.2 5,490,094 - Psyr_4630 0.80 -1.6 5,490,159 + +0.3 5,490,194 + +0.0 5,490,195 - -0.1 5,490,254 + -0.7 5,490,273 + -0.1 5,490,273 + +2.8 5,490,274 - -0.4 5,490,274 - +0.2 5,490,274 - +0.2 5,490,274 - +0.9 5,490,274 - -0.7 5,490,280 - -0.2 5,490,285 - +0.5 5,490,337 - +2.0 5,490,340 + -0.5 5,490,346 + +0.7 5,490,375 + -1.6 5,490,375 + -1.3 5,490,375 + +1.1 5,490,375 + -1.0 5,490,376 - +0.3 5,490,376 - +0.9 5,490,376 - -0.1 5,490,378 + -0.2 5,490,378 + +0.3 5,490,378 + -0.8 5,490,379 - -0.3 5,490,379 - +0.4 5,490,379 - +0.8 5,490,381 + +0.2 5,490,382 - -0.1 5,490,382 - -0.2 5,490,451 + +0.1 5,490,451 + +2.1 5,490,451 + +0.2 5,490,451 + +0.8 5,490,451 + +0.4 5,490,451 + -1.1 5,490,452 - -0.2 5,490,452 - +0.9 5,490,452 - +0.1 5,490,453 + -0.5 5,490,453 + -0.3 5,490,454 - -0.9 5,490,454 - -0.3 5,490,454 - -0.7 5,490,454 - +0.2 5,490,454 - +1.8 5,490,515 + +1.4 5,490,516 - -1.1 5,490,548 + -0.0 5,490,604 + -0.1 5,490,604 + -0.9 5,490,605 - +0.5 5,490,651 + Psyr_4631 0.11 -0.4 5,490,652 - Psyr_4631 0.11 +0.8 5,490,764 + Psyr_4631 0.17 -0.7 5,490,764 + Psyr_4631 0.17 -0.7 5,490,764 + Psyr_4631 0.17 +0.2 5,490,842 + Psyr_4631 0.21 +0.8 5,490,842 + Psyr_4631 0.21 -1.1 5,490,843 - Psyr_4631 0.21 -1.4 5,490,843 - Psyr_4631 0.21 +0.6 5,490,843 - Psyr_4631 0.21 +0.6 5,490,843 - Psyr_4631 0.21 +0.3 5,490,944 + Psyr_4631 0.26 -0.3 5,490,944 + Psyr_4631 0.26 +0.7 5,490,945 - Psyr_4631 0.26 +0.1
Or see this region's nucleotide sequence