Experiment: KB with Tetracycline 0.0015 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4334 and Psyr_4335 are separated by 381 nucleotides Psyr_4335 and Psyr_4336 are separated by 13 nucleotides Psyr_4336 and Psyr_4337 are separated by 79 nucleotides
Psyr_4334: Psyr_4334 - conserved hypothetical protein, at 5,185,538 to 5,186,704
_4334
Psyr_4335: Psyr_4335 - transcriptional regulator, AsnC family, at 5,187,086 to 5,187,577
_4335
Psyr_4336: Psyr_4336 - ribosomal large subunit pseudouridine synthase E, at 5,187,591 to 5,188,223
_4336
Psyr_4337: Psyr_4337 - AMP nucleosidase, at 5,188,303 to 5,189,766
_4337
Position (kb) 5187
5188 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5186.175 kb on + strand, within Psyr_4334 at 5186.175 kb on + strand, within Psyr_4334 at 5186.178 kb on + strand, within Psyr_4334 at 5186.179 kb on - strand, within Psyr_4334 at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.672 kb on + strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.673 kb on - strand at 5186.717 kb on - strand at 5186.737 kb on + strand at 5186.737 kb on + strand at 5186.738 kb on - strand at 5186.738 kb on - strand at 5186.773 kb on + strand at 5186.816 kb on + strand at 5186.816 kb on + strand at 5186.816 kb on + strand at 5186.816 kb on + strand at 5186.816 kb on + strand at 5186.816 kb on + strand at 5186.817 kb on - strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.875 kb on + strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.876 kb on - strand at 5186.879 kb on + strand at 5186.879 kb on + strand at 5186.879 kb on + strand at 5186.880 kb on - strand at 5186.984 kb on + strand at 5187.026 kb on - strand at 5187.117 kb on - strand at 5187.117 kb on - strand at 5187.117 kb on - strand at 5187.242 kb on + strand, within Psyr_4335 at 5187.242 kb on + strand, within Psyr_4335 at 5187.243 kb on - strand, within Psyr_4335 at 5187.419 kb on + strand, within Psyr_4335 at 5187.420 kb on - strand, within Psyr_4335 at 5187.616 kb on + strand at 5187.617 kb on - strand at 5187.922 kb on + strand, within Psyr_4336 at 5187.922 kb on + strand, within Psyr_4336 at 5187.922 kb on + strand, within Psyr_4336 at 5187.923 kb on - strand, within Psyr_4336 at 5187.987 kb on + strand, within Psyr_4336 at 5188.030 kb on + strand, within Psyr_4336 at 5188.031 kb on - strand, within Psyr_4336 at 5188.260 kb on + strand at 5188.279 kb on + strand at 5188.279 kb on + strand at 5188.280 kb on - strand at 5188.280 kb on - strand at 5188.280 kb on - strand at 5188.280 kb on - strand at 5188.287 kb on + strand at 5188.287 kb on + strand at 5188.287 kb on + strand at 5188.288 kb on - strand at 5188.288 kb on - strand at 5188.288 kb on - strand at 5188.288 kb on - strand at 5188.288 kb on - strand at 5188.424 kb on + strand at 5188.424 kb on + strand at 5188.424 kb on + strand at 5188.424 kb on + strand at 5188.425 kb on - strand at 5188.518 kb on - strand, within Psyr_4337
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Tetracycline 0.0015 ug/ml remove 5,186,175 + Psyr_4334 0.55 -0.2 5,186,175 + Psyr_4334 0.55 -0.4 5,186,178 + Psyr_4334 0.55 +0.9 5,186,179 - Psyr_4334 0.55 -1.0 5,186,672 + +0.5 5,186,672 + +0.3 5,186,672 + +0.6 5,186,672 + -0.5 5,186,672 + +1.2 5,186,672 + -1.9 5,186,672 + -0.3 5,186,672 + -0.2 5,186,673 - -0.4 5,186,673 - -0.8 5,186,673 - +0.0 5,186,673 - -1.0 5,186,673 - +0.0 5,186,673 - +1.6 5,186,673 - -2.2 5,186,717 - +0.0 5,186,737 + -0.4 5,186,737 + +0.8 5,186,738 - -1.4 5,186,738 - -0.5 5,186,773 + -1.5 5,186,816 + -0.3 5,186,816 + -1.0 5,186,816 + +0.8 5,186,816 + +0.0 5,186,816 + -0.7 5,186,816 + +0.6 5,186,817 - -1.2 5,186,875 + -2.2 5,186,875 + -0.1 5,186,875 + -0.2 5,186,875 + +0.3 5,186,875 + -0.2 5,186,875 + +2.4 5,186,875 + -1.3 5,186,875 + -0.5 5,186,875 + -0.9 5,186,875 + +0.3 5,186,875 + +0.9 5,186,876 - +0.7 5,186,876 - -0.8 5,186,876 - +0.8 5,186,876 - -0.1 5,186,876 - +0.6 5,186,876 - +0.4 5,186,876 - -0.4 5,186,876 - -0.8 5,186,876 - -0.7 5,186,876 - +0.0 5,186,876 - -0.4 5,186,876 - +0.8 5,186,876 - -0.5 5,186,876 - +0.8 5,186,876 - +0.2 5,186,876 - +0.3 5,186,876 - -0.9 5,186,876 - +0.9 5,186,876 - +2.4 5,186,879 + +0.7 5,186,879 + -2.1 5,186,879 + -0.4 5,186,880 - -0.8 5,186,984 + -1.0 5,187,026 - +0.3 5,187,117 - +0.6 5,187,117 - +0.7 5,187,117 - -0.8 5,187,242 + Psyr_4335 0.32 +0.2 5,187,242 + Psyr_4335 0.32 +1.1 5,187,243 - Psyr_4335 0.32 -0.7 5,187,419 + Psyr_4335 0.68 +0.6 5,187,420 - Psyr_4335 0.68 -0.0 5,187,616 + -0.6 5,187,617 - -0.5 5,187,922 + Psyr_4336 0.52 +0.8 5,187,922 + Psyr_4336 0.52 -0.0 5,187,922 + Psyr_4336 0.52 +0.8 5,187,923 - Psyr_4336 0.52 +1.8 5,187,987 + Psyr_4336 0.63 -0.0 5,188,030 + Psyr_4336 0.69 -0.7 5,188,031 - Psyr_4336 0.70 +0.5 5,188,260 + +0.6 5,188,279 + +0.8 5,188,279 + -0.1 5,188,280 - +0.8 5,188,280 - -0.7 5,188,280 - +0.6 5,188,280 - -0.5 5,188,287 + +0.5 5,188,287 + -1.8 5,188,287 + -1.9 5,188,288 - +0.8 5,188,288 - -0.1 5,188,288 - -0.6 5,188,288 - -0.3 5,188,288 - -0.5 5,188,424 + -0.2 5,188,424 + -0.2 5,188,424 + -0.2 5,188,424 + -0.0 5,188,425 - +0.3 5,188,518 - Psyr_4337 0.15 +0.2
Or see this region's nucleotide sequence