Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4009

Experiment: KB with Tetracycline 0.0015 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4008 and Psyr_4009 overlap by 4 nucleotidesPsyr_4009 and Psyr_4010 are separated by 63 nucleotides Psyr_4008: Psyr_4008 - Hydrophobe/amphiphile efflux-1 HAE1, at 4,772,247 to 4,775,381 _4008 Psyr_4009: Psyr_4009 - RND efflux system, outer membrane lipoprotein, NodT, at 4,775,378 to 4,776,838 _4009 Psyr_4010: Psyr_4010 - Citrate-proton symport, at 4,776,902 to 4,778,203 _4010 Position (kb) 4775 4776 4777Strain fitness (log2 ratio) -2 -1 0 1 2at 4775.448 kb on - strandat 4775.448 kb on - strandat 4775.448 kb on - strandat 4775.643 kb on - strand, within Psyr_4009at 4775.852 kb on + strand, within Psyr_4009at 4775.852 kb on + strand, within Psyr_4009at 4775.852 kb on + strand, within Psyr_4009at 4775.853 kb on - strand, within Psyr_4009at 4775.853 kb on - strand, within Psyr_4009at 4775.853 kb on - strand, within Psyr_4009at 4775.853 kb on - strand, within Psyr_4009at 4775.853 kb on - strand, within Psyr_4009at 4775.918 kb on + strand, within Psyr_4009at 4775.918 kb on + strand, within Psyr_4009at 4775.918 kb on + strand, within Psyr_4009at 4775.918 kb on + strand, within Psyr_4009at 4775.918 kb on + strand, within Psyr_4009at 4775.918 kb on + strand, within Psyr_4009at 4775.919 kb on - strand, within Psyr_4009at 4775.919 kb on - strand, within Psyr_4009at 4775.919 kb on - strand, within Psyr_4009at 4775.919 kb on - strand, within Psyr_4009at 4775.919 kb on - strand, within Psyr_4009at 4775.979 kb on - strand, within Psyr_4009at 4775.979 kb on - strand, within Psyr_4009at 4776.092 kb on + strand, within Psyr_4009at 4776.093 kb on - strand, within Psyr_4009at 4776.560 kb on + strand, within Psyr_4009at 4776.560 kb on + strand, within Psyr_4009at 4776.560 kb on + strand, within Psyr_4009at 4776.561 kb on - strand, within Psyr_4009at 4776.561 kb on - strand, within Psyr_4009at 4776.561 kb on - strand, within Psyr_4009at 4776.561 kb on - strand, within Psyr_4009at 4776.611 kb on + strand, within Psyr_4009at 4776.611 kb on + strand, within Psyr_4009at 4776.611 kb on + strand, within Psyr_4009at 4776.611 kb on + strand, within Psyr_4009at 4776.612 kb on - strand, within Psyr_4009at 4776.612 kb on - strand, within Psyr_4009at 4776.612 kb on - strand, within Psyr_4009at 4776.614 kb on + strand, within Psyr_4009at 4776.615 kb on - strand, within Psyr_4009at 4776.752 kb on + strandat 4776.752 kb on + strandat 4776.752 kb on + strandat 4776.753 kb on - strandat 4776.753 kb on - strandat 4776.753 kb on - strandat 4776.776 kb on + strandat 4776.777 kb on - strandat 4776.921 kb on + strandat 4776.921 kb on + strandat 4776.921 kb on + strandat 4776.921 kb on + strandat 4776.921 kb on + strandat 4776.921 kb on + strandat 4776.922 kb on - strandat 4776.922 kb on - strandat 4776.922 kb on - strandat 4776.984 kb on + strandat 4776.984 kb on + strandat 4776.985 kb on - strandat 4776.985 kb on - strandat 4776.990 kb on + strandat 4776.991 kb on - strandat 4776.991 kb on - strandat 4777.074 kb on + strand, within Psyr_4010at 4777.149 kb on + strand, within Psyr_4010at 4777.149 kb on + strand, within Psyr_4010at 4777.149 kb on + strand, within Psyr_4010at 4777.150 kb on - strand, within Psyr_4010at 4777.150 kb on - strand, within Psyr_4010at 4777.178 kb on - strand, within Psyr_4010at 4777.240 kb on + strand, within Psyr_4010at 4777.240 kb on + strand, within Psyr_4010at 4777.241 kb on - strand, within Psyr_4010at 4777.241 kb on - strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.332 kb on + strand, within Psyr_4010at 4777.333 kb on - strand, within Psyr_4010at 4777.333 kb on - strand, within Psyr_4010at 4777.333 kb on - strand, within Psyr_4010at 4777.333 kb on - strand, within Psyr_4010at 4777.333 kb on - strand, within Psyr_4010at 4777.333 kb on - strand, within Psyr_4010at 4777.333 kb on - strand, within Psyr_4010at 4777.333 kb on - strand, within Psyr_4010at 4777.333 kb on - strand, within Psyr_4010at 4777.333 kb on - strand, within Psyr_4010at 4777.333 kb on - strand, within Psyr_4010at 4777.333 kb on - strand, within Psyr_4010at 4777.333 kb on - strand, within Psyr_4010at 4777.333 kb on - strand, within Psyr_4010at 4777.334 kb on + strand, within Psyr_4010at 4777.335 kb on - strand, within Psyr_4010at 4777.335 kb on - strand, within Psyr_4010at 4777.335 kb on - strand, within Psyr_4010at 4777.359 kb on + strand, within Psyr_4010at 4777.359 kb on + strand, within Psyr_4010at 4777.359 kb on + strand, within Psyr_4010at 4777.359 kb on + strand, within Psyr_4010at 4777.359 kb on + strand, within Psyr_4010at 4777.359 kb on + strand, within Psyr_4010at 4777.359 kb on + strand, within Psyr_4010at 4777.359 kb on + strand, within Psyr_4010at 4777.360 kb on - strand, within Psyr_4010at 4777.360 kb on - strand, within Psyr_4010at 4777.360 kb on - strand, within Psyr_4010at 4777.360 kb on - strand, within Psyr_4010at 4777.360 kb on - strand, within Psyr_4010at 4777.360 kb on - strand, within Psyr_4010at 4777.360 kb on - strand, within Psyr_4010at 4777.401 kb on + strand, within Psyr_4010at 4777.402 kb on - strand, within Psyr_4010at 4777.413 kb on + strand, within Psyr_4010at 4777.413 kb on + strand, within Psyr_4010at 4777.413 kb on + strand, within Psyr_4010at 4777.413 kb on + strand, within Psyr_4010at 4777.413 kb on + strand, within Psyr_4010at 4777.413 kb on + strand, within Psyr_4010at 4777.413 kb on + strand, within Psyr_4010at 4777.413 kb on + strand, within Psyr_4010at 4777.413 kb on + strand, within Psyr_4010at 4777.413 kb on + strand, within Psyr_4010at 4777.413 kb on + strand, within Psyr_4010at 4777.413 kb on + strand, within Psyr_4010at 4777.413 kb on + strand, within Psyr_4010at 4777.414 kb on - strand, within Psyr_4010at 4777.414 kb on - strand, within Psyr_4010at 4777.414 kb on - strand, within Psyr_4010at 4777.414 kb on - strand, within Psyr_4010at 4777.414 kb on - strand, within Psyr_4010at 4777.414 kb on - strand, within Psyr_4010at 4777.414 kb on - strand, within Psyr_4010at 4777.414 kb on - strand, within Psyr_4010at 4777.414 kb on - strand, within Psyr_4010at 4777.414 kb on - strand, within Psyr_4010at 4777.428 kb on + strand, within Psyr_4010at 4777.507 kb on + strand, within Psyr_4010at 4777.713 kb on + strand, within Psyr_4010at 4777.714 kb on - strand, within Psyr_4010at 4777.728 kb on + strand, within Psyr_4010at 4777.728 kb on + strand, within Psyr_4010at 4777.728 kb on + strand, within Psyr_4010at 4777.728 kb on + strand, within Psyr_4010at 4777.729 kb on - strand, within Psyr_4010at 4777.729 kb on - strand, within Psyr_4010at 4777.729 kb on - strand, within Psyr_4010at 4777.729 kb on - strand, within Psyr_4010at 4777.748 kb on + strand, within Psyr_4010at 4777.748 kb on + strand, within Psyr_4010at 4777.749 kb on - strand, within Psyr_4010at 4777.749 kb on - strand, within Psyr_4010at 4777.767 kb on + strand, within Psyr_4010at 4777.767 kb on + strand, within Psyr_4010at 4777.767 kb on + strand, within Psyr_4010at 4777.767 kb on + strand, within Psyr_4010at 4777.767 kb on + strand, within Psyr_4010at 4777.767 kb on + strand, within Psyr_4010at 4777.767 kb on + strand, within Psyr_4010at 4777.767 kb on + strand, within Psyr_4010at 4777.767 kb on + strand, within Psyr_4010at 4777.767 kb on + strand, within Psyr_4010at 4777.767 kb on + strand, within Psyr_4010at 4777.767 kb on + strand, within Psyr_4010at 4777.768 kb on - strand, within Psyr_4010at 4777.768 kb on - strand, within Psyr_4010at 4777.768 kb on - strand, within Psyr_4010at 4777.768 kb on - strand, within Psyr_4010at 4777.768 kb on - strand, within Psyr_4010at 4777.768 kb on - strand, within Psyr_4010at 4777.768 kb on - strand, within Psyr_4010at 4777.768 kb on - strand, within Psyr_4010

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Tetracycline 0.0015 ug/ml
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4,775,448 - +1.3
4,775,448 - -0.1
4,775,448 - -0.9
4,775,643 - Psyr_4009 0.18 -0.1
4,775,852 + Psyr_4009 0.32 -0.4
4,775,852 + Psyr_4009 0.32 +0.1
4,775,852 + Psyr_4009 0.32 -0.4
4,775,853 - Psyr_4009 0.33 -0.3
4,775,853 - Psyr_4009 0.33 +0.7
4,775,853 - Psyr_4009 0.33 -0.2
4,775,853 - Psyr_4009 0.33 -0.3
4,775,853 - Psyr_4009 0.33 -0.7
4,775,918 + Psyr_4009 0.37 +1.2
4,775,918 + Psyr_4009 0.37 +0.1
4,775,918 + Psyr_4009 0.37 +1.4
4,775,918 + Psyr_4009 0.37 -1.8
4,775,918 + Psyr_4009 0.37 -0.2
4,775,918 + Psyr_4009 0.37 -0.9
4,775,919 - Psyr_4009 0.37 -0.7
4,775,919 - Psyr_4009 0.37 -0.1
4,775,919 - Psyr_4009 0.37 -0.2
4,775,919 - Psyr_4009 0.37 -1.3
4,775,919 - Psyr_4009 0.37 +0.5
4,775,979 - Psyr_4009 0.41 +1.0
4,775,979 - Psyr_4009 0.41 +0.3
4,776,092 + Psyr_4009 0.49 +0.3
4,776,093 - Psyr_4009 0.49 +2.7
4,776,560 + Psyr_4009 0.81 +0.8
4,776,560 + Psyr_4009 0.81 +0.7
4,776,560 + Psyr_4009 0.81 -1.5
4,776,561 - Psyr_4009 0.81 -0.6
4,776,561 - Psyr_4009 0.81 -0.4
4,776,561 - Psyr_4009 0.81 +0.1
4,776,561 - Psyr_4009 0.81 +0.4
4,776,611 + Psyr_4009 0.84 +0.3
4,776,611 + Psyr_4009 0.84 +0.1
4,776,611 + Psyr_4009 0.84 -1.3
4,776,611 + Psyr_4009 0.84 +0.1
4,776,612 - Psyr_4009 0.84 -0.4
4,776,612 - Psyr_4009 0.84 -0.7
4,776,612 - Psyr_4009 0.84 +1.7
4,776,614 + Psyr_4009 0.85 +0.7
4,776,615 - Psyr_4009 0.85 -0.6
4,776,752 + +0.7
4,776,752 + -0.2
4,776,752 + +0.3
4,776,753 - +1.3
4,776,753 - +0.6
4,776,753 - +0.8
4,776,776 + -0.3
4,776,777 - +0.5
4,776,921 + -0.2
4,776,921 + +0.1
4,776,921 + +0.5
4,776,921 + -0.2
4,776,921 + +1.2
4,776,921 + +0.5
4,776,922 - +0.4
4,776,922 - -0.9
4,776,922 - -0.2
4,776,984 + +0.2
4,776,984 + -0.1
4,776,985 - -0.8
4,776,985 - -0.5
4,776,990 + +0.2
4,776,991 - -1.9
4,776,991 - +0.9
4,777,074 + Psyr_4010 0.13 -0.3
4,777,149 + Psyr_4010 0.19 +0.8
4,777,149 + Psyr_4010 0.19 +0.7
4,777,149 + Psyr_4010 0.19 -0.2
4,777,150 - Psyr_4010 0.19 +0.5
4,777,150 - Psyr_4010 0.19 +0.3
4,777,178 - Psyr_4010 0.21 -0.3
4,777,240 + Psyr_4010 0.26 +0.5
4,777,240 + Psyr_4010 0.26 -1.3
4,777,241 - Psyr_4010 0.26 +0.3
4,777,241 - Psyr_4010 0.26 +1.4
4,777,332 + Psyr_4010 0.33 -1.1
4,777,332 + Psyr_4010 0.33 -1.8
4,777,332 + Psyr_4010 0.33 +0.8
4,777,332 + Psyr_4010 0.33 +0.5
4,777,332 + Psyr_4010 0.33 -0.4
4,777,332 + Psyr_4010 0.33 -1.2
4,777,332 + Psyr_4010 0.33 +1.3
4,777,332 + Psyr_4010 0.33 -0.9
4,777,332 + Psyr_4010 0.33 +0.3
4,777,332 + Psyr_4010 0.33 -2.4
4,777,332 + Psyr_4010 0.33 -1.5
4,777,332 + Psyr_4010 0.33 -0.7
4,777,332 + Psyr_4010 0.33 -0.8
4,777,332 + Psyr_4010 0.33 +0.1
4,777,332 + Psyr_4010 0.33 +1.7
4,777,332 + Psyr_4010 0.33 +0.1
4,777,333 - Psyr_4010 0.33 +0.3
4,777,333 - Psyr_4010 0.33 -1.7
4,777,333 - Psyr_4010 0.33 -0.6
4,777,333 - Psyr_4010 0.33 -0.7
4,777,333 - Psyr_4010 0.33 +0.8
4,777,333 - Psyr_4010 0.33 +0.9
4,777,333 - Psyr_4010 0.33 -2.0
4,777,333 - Psyr_4010 0.33 +1.1
4,777,333 - Psyr_4010 0.33 +0.1
4,777,333 - Psyr_4010 0.33 -0.6
4,777,333 - Psyr_4010 0.33 -1.0
4,777,333 - Psyr_4010 0.33 -0.8
4,777,333 - Psyr_4010 0.33 -0.7
4,777,333 - Psyr_4010 0.33 +0.3
4,777,334 + Psyr_4010 0.33 +1.0
4,777,335 - Psyr_4010 0.33 +1.1
4,777,335 - Psyr_4010 0.33 +0.3
4,777,335 - Psyr_4010 0.33 -1.3
4,777,359 + Psyr_4010 0.35 +0.7
4,777,359 + Psyr_4010 0.35 -0.6
4,777,359 + Psyr_4010 0.35 -1.1
4,777,359 + Psyr_4010 0.35 -0.1
4,777,359 + Psyr_4010 0.35 -0.3
4,777,359 + Psyr_4010 0.35 -0.7
4,777,359 + Psyr_4010 0.35 -0.1
4,777,359 + Psyr_4010 0.35 +1.7
4,777,360 - Psyr_4010 0.35 -0.1
4,777,360 - Psyr_4010 0.35 -1.3
4,777,360 - Psyr_4010 0.35 +0.7
4,777,360 - Psyr_4010 0.35 -0.3
4,777,360 - Psyr_4010 0.35 +0.7
4,777,360 - Psyr_4010 0.35 -1.4
4,777,360 - Psyr_4010 0.35 -0.7
4,777,401 + Psyr_4010 0.38 -1.3
4,777,402 - Psyr_4010 0.38 +0.7
4,777,413 + Psyr_4010 0.39 -0.5
4,777,413 + Psyr_4010 0.39 +0.4
4,777,413 + Psyr_4010 0.39 +0.2
4,777,413 + Psyr_4010 0.39 -0.1
4,777,413 + Psyr_4010 0.39 +0.0
4,777,413 + Psyr_4010 0.39 -0.9
4,777,413 + Psyr_4010 0.39 -0.8
4,777,413 + Psyr_4010 0.39 -1.2
4,777,413 + Psyr_4010 0.39 +0.3
4,777,413 + Psyr_4010 0.39 +0.3
4,777,413 + Psyr_4010 0.39 -0.4
4,777,413 + Psyr_4010 0.39 +0.1
4,777,413 + Psyr_4010 0.39 -1.8
4,777,414 - Psyr_4010 0.39 -1.5
4,777,414 - Psyr_4010 0.39 -1.1
4,777,414 - Psyr_4010 0.39 +0.1
4,777,414 - Psyr_4010 0.39 +0.6
4,777,414 - Psyr_4010 0.39 -1.1
4,777,414 - Psyr_4010 0.39 +0.0
4,777,414 - Psyr_4010 0.39 +0.4
4,777,414 - Psyr_4010 0.39 -1.5
4,777,414 - Psyr_4010 0.39 +0.4
4,777,414 - Psyr_4010 0.39 -2.2
4,777,428 + Psyr_4010 0.40 +0.8
4,777,507 + Psyr_4010 0.46 -0.1
4,777,713 + Psyr_4010 0.62 +1.0
4,777,714 - Psyr_4010 0.62 -0.1
4,777,728 + Psyr_4010 0.63 +2.3
4,777,728 + Psyr_4010 0.63 -1.3
4,777,728 + Psyr_4010 0.63 -0.1
4,777,728 + Psyr_4010 0.63 -0.4
4,777,729 - Psyr_4010 0.64 +1.5
4,777,729 - Psyr_4010 0.64 -0.7
4,777,729 - Psyr_4010 0.64 +1.1
4,777,729 - Psyr_4010 0.64 -0.3
4,777,748 + Psyr_4010 0.65 +0.7
4,777,748 + Psyr_4010 0.65 -0.9
4,777,749 - Psyr_4010 0.65 -1.1
4,777,749 - Psyr_4010 0.65 -0.0
4,777,767 + Psyr_4010 0.66 +0.1
4,777,767 + Psyr_4010 0.66 -1.2
4,777,767 + Psyr_4010 0.66 -1.7
4,777,767 + Psyr_4010 0.66 +0.5
4,777,767 + Psyr_4010 0.66 +1.2
4,777,767 + Psyr_4010 0.66 +0.4
4,777,767 + Psyr_4010 0.66 -0.3
4,777,767 + Psyr_4010 0.66 +0.3
4,777,767 + Psyr_4010 0.66 +0.1
4,777,767 + Psyr_4010 0.66 +0.2
4,777,767 + Psyr_4010 0.66 -1.4
4,777,767 + Psyr_4010 0.66 -0.9
4,777,768 - Psyr_4010 0.67 +0.1
4,777,768 - Psyr_4010 0.67 -0.8
4,777,768 - Psyr_4010 0.67 +0.6
4,777,768 - Psyr_4010 0.67 +0.9
4,777,768 - Psyr_4010 0.67 -1.5
4,777,768 - Psyr_4010 0.67 +1.0
4,777,768 - Psyr_4010 0.67 -1.6
4,777,768 - Psyr_4010 0.67 -0.5

Or see this region's nucleotide sequence