Experiment: KB with Tetracycline 0.0015 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3843 and Psyr_3844 are separated by 150 nucleotides Psyr_3844 and Psyr_3845 are separated by 325 nucleotides Psyr_3845 and Psyr_3846 are separated by 227 nucleotides
Psyr_3843: Psyr_3843 - diguanylate cyclase/phosphodiesterase, at 4,580,648 to 4,582,939
_3843
Psyr_3844: Psyr_3844 - conserved hypothetical protein, at 4,583,090 to 4,583,395
_3844
Psyr_3845: Psyr_3845 - L-leucine-binding protein / L-valine-binding protein / L-isoleucine-binding protein, at 4,583,721 to 4,584,845
_3845
Psyr_3846: Psyr_3846 - L-valine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein / L-leucine ABC transporter membrane protein, at 4,585,073 to 4,585,996
_3846
Position (kb) 4583
4584
4585 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4582.724 kb on + strand at 4582.724 kb on + strand at 4582.724 kb on + strand at 4582.725 kb on - strand at 4582.725 kb on - strand at 4582.728 kb on + strand at 4582.728 kb on + strand at 4582.728 kb on + strand at 4582.728 kb on + strand at 4582.729 kb on - strand at 4582.729 kb on - strand at 4582.729 kb on - strand at 4582.729 kb on - strand at 4582.729 kb on - strand at 4582.729 kb on - strand at 4582.736 kb on + strand at 4582.736 kb on + strand at 4582.736 kb on + strand at 4582.736 kb on + strand at 4582.736 kb on + strand at 4582.737 kb on - strand at 4582.737 kb on - strand at 4582.737 kb on - strand at 4582.737 kb on - strand at 4582.738 kb on + strand at 4582.738 kb on + strand at 4582.738 kb on + strand at 4582.738 kb on + strand at 4582.738 kb on + strand at 4582.738 kb on + strand at 4582.738 kb on + strand at 4582.738 kb on + strand at 4582.738 kb on + strand at 4582.738 kb on + strand at 4582.738 kb on + strand at 4582.738 kb on + strand at 4582.739 kb on - strand at 4582.739 kb on - strand at 4582.739 kb on - strand at 4582.739 kb on - strand at 4582.739 kb on - strand at 4582.739 kb on - strand at 4582.839 kb on - strand at 4583.015 kb on - strand at 4583.040 kb on - strand at 4583.040 kb on - strand at 4583.133 kb on - strand, within Psyr_3844 at 4583.135 kb on + strand, within Psyr_3844 at 4583.370 kb on + strand at 4583.380 kb on + strand at 4583.380 kb on + strand at 4583.380 kb on + strand at 4583.471 kb on - strand at 4583.495 kb on + strand at 4583.615 kb on + strand at 4583.690 kb on + strand at 4583.690 kb on + strand at 4583.691 kb on - strand at 4583.692 kb on + strand at 4583.692 kb on + strand at 4583.693 kb on - strand at 4583.693 kb on - strand at 4583.700 kb on - strand at 4583.726 kb on + strand at 4583.727 kb on - strand at 4583.739 kb on - strand at 4583.917 kb on + strand, within Psyr_3845 at 4583.917 kb on + strand, within Psyr_3845 at 4583.917 kb on + strand, within Psyr_3845 at 4583.917 kb on + strand, within Psyr_3845 at 4583.918 kb on - strand, within Psyr_3845 at 4583.918 kb on - strand, within Psyr_3845 at 4583.918 kb on - strand, within Psyr_3845 at 4583.918 kb on - strand, within Psyr_3845 at 4583.946 kb on + strand, within Psyr_3845 at 4583.946 kb on + strand, within Psyr_3845 at 4583.946 kb on + strand, within Psyr_3845 at 4583.946 kb on + strand, within Psyr_3845 at 4584.015 kb on + strand, within Psyr_3845 at 4584.015 kb on + strand, within Psyr_3845 at 4584.015 kb on + strand, within Psyr_3845 at 4584.015 kb on + strand, within Psyr_3845 at 4584.015 kb on + strand, within Psyr_3845 at 4584.016 kb on - strand, within Psyr_3845 at 4584.192 kb on + strand, within Psyr_3845 at 4584.192 kb on + strand, within Psyr_3845 at 4584.192 kb on + strand, within Psyr_3845 at 4584.192 kb on + strand, within Psyr_3845 at 4584.192 kb on + strand, within Psyr_3845 at 4584.192 kb on + strand, within Psyr_3845 at 4584.193 kb on - strand, within Psyr_3845 at 4584.193 kb on - strand, within Psyr_3845 at 4584.193 kb on - strand, within Psyr_3845 at 4584.193 kb on - strand, within Psyr_3845 at 4584.193 kb on - strand, within Psyr_3845 at 4584.193 kb on - strand, within Psyr_3845 at 4584.193 kb on - strand, within Psyr_3845 at 4584.393 kb on + strand, within Psyr_3845 at 4584.393 kb on + strand, within Psyr_3845 at 4584.394 kb on - strand, within Psyr_3845 at 4584.643 kb on - strand, within Psyr_3845 at 4584.759 kb on + strand at 4584.760 kb on - strand at 4584.801 kb on + strand at 4584.801 kb on + strand at 4584.843 kb on + strand at 4584.843 kb on + strand at 4584.844 kb on - strand at 4584.844 kb on - strand at 4584.844 kb on - strand at 4584.939 kb on + strand at 4584.939 kb on + strand at 4584.940 kb on - strand at 4584.940 kb on - strand at 4584.940 kb on - strand at 4584.940 kb on - strand at 4584.964 kb on + strand at 4584.964 kb on + strand at 4584.976 kb on + strand at 4585.070 kb on + strand at 4585.071 kb on - strand at 4585.091 kb on + strand at 4585.091 kb on + strand at 4585.091 kb on + strand at 4585.091 kb on + strand at 4585.091 kb on + strand at 4585.091 kb on + strand at 4585.091 kb on + strand at 4585.092 kb on - strand at 4585.092 kb on - strand at 4585.092 kb on - strand at 4585.092 kb on - strand at 4585.092 kb on - strand at 4585.092 kb on - strand at 4585.092 kb on - strand at 4585.129 kb on + strand at 4585.129 kb on + strand at 4585.129 kb on + strand at 4585.129 kb on + strand at 4585.130 kb on - strand at 4585.130 kb on - strand at 4585.133 kb on + strand at 4585.133 kb on + strand at 4585.133 kb on + strand at 4585.133 kb on + strand at 4585.133 kb on + strand at 4585.134 kb on - strand at 4585.134 kb on - strand at 4585.134 kb on - strand at 4585.134 kb on - strand at 4585.134 kb on - strand at 4585.134 kb on - strand at 4585.134 kb on - strand at 4585.134 kb on - strand at 4585.134 kb on - strand at 4585.134 kb on - strand at 4585.134 kb on - strand at 4585.134 kb on - strand at 4585.134 kb on - strand at 4585.134 kb on - strand at 4585.134 kb on - strand at 4585.166 kb on + strand, within Psyr_3846 at 4585.167 kb on - strand, within Psyr_3846 at 4585.208 kb on + strand, within Psyr_3846 at 4585.208 kb on + strand, within Psyr_3846 at 4585.208 kb on + strand, within Psyr_3846 at 4585.208 kb on + strand, within Psyr_3846 at 4585.208 kb on + strand, within Psyr_3846 at 4585.208 kb on + strand, within Psyr_3846 at 4585.208 kb on + strand, within Psyr_3846 at 4585.208 kb on + strand, within Psyr_3846 at 4585.208 kb on + strand, within Psyr_3846 at 4585.208 kb on + strand, within Psyr_3846 at 4585.208 kb on + strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.209 kb on - strand, within Psyr_3846 at 4585.223 kb on + strand, within Psyr_3846 at 4585.223 kb on + strand, within Psyr_3846 at 4585.223 kb on + strand, within Psyr_3846 at 4585.223 kb on + strand, within Psyr_3846 at 4585.223 kb on + strand, within Psyr_3846 at 4585.224 kb on - strand, within Psyr_3846 at 4585.224 kb on - strand, within Psyr_3846 at 4585.224 kb on - strand, within Psyr_3846 at 4585.224 kb on - strand, within Psyr_3846 at 4585.224 kb on - strand, within Psyr_3846 at 4585.334 kb on + strand, within Psyr_3846 at 4585.533 kb on - strand, within Psyr_3846
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Tetracycline 0.0015 ug/ml remove 4,582,724 + -1.4 4,582,724 + +0.3 4,582,724 + +0.1 4,582,725 - -0.5 4,582,725 - +0.5 4,582,728 + +0.5 4,582,728 + +0.1 4,582,728 + +1.6 4,582,728 + +1.2 4,582,729 - -0.0 4,582,729 - +1.2 4,582,729 - +0.6 4,582,729 - -0.2 4,582,729 - -0.7 4,582,729 - -0.3 4,582,736 + +0.1 4,582,736 + +0.2 4,582,736 + +2.1 4,582,736 + -0.1 4,582,736 + +0.1 4,582,737 - -0.3 4,582,737 - -0.1 4,582,737 - -0.7 4,582,737 - +0.6 4,582,738 + -0.9 4,582,738 + +0.4 4,582,738 + -0.3 4,582,738 + -0.8 4,582,738 + -0.9 4,582,738 + -0.0 4,582,738 + -1.9 4,582,738 + -0.2 4,582,738 + +0.0 4,582,738 + +2.2 4,582,738 + -0.8 4,582,738 + -0.7 4,582,739 - -1.2 4,582,739 - +0.9 4,582,739 - -1.9 4,582,739 - -0.7 4,582,739 - -0.4 4,582,739 - +0.4 4,582,839 - -0.5 4,583,015 - +0.2 4,583,040 - -0.1 4,583,040 - -0.5 4,583,133 - Psyr_3844 0.14 -3.1 4,583,135 + Psyr_3844 0.15 -1.7 4,583,370 + -0.3 4,583,380 + -0.8 4,583,380 + +0.8 4,583,380 + -2.2 4,583,471 - +0.8 4,583,495 + +0.1 4,583,615 + -0.2 4,583,690 + -0.5 4,583,690 + +0.5 4,583,691 - +0.6 4,583,692 + -0.3 4,583,692 + -1.3 4,583,693 - -0.7 4,583,693 - -0.4 4,583,700 - -0.0 4,583,726 + -0.0 4,583,727 - +0.8 4,583,739 - -0.4 4,583,917 + Psyr_3845 0.17 -0.4 4,583,917 + Psyr_3845 0.17 +0.3 4,583,917 + Psyr_3845 0.17 -0.4 4,583,917 + Psyr_3845 0.17 -0.4 4,583,918 - Psyr_3845 0.18 -0.6 4,583,918 - Psyr_3845 0.18 +0.7 4,583,918 - Psyr_3845 0.18 -1.1 4,583,918 - Psyr_3845 0.18 +0.2 4,583,946 + Psyr_3845 0.20 -1.2 4,583,946 + Psyr_3845 0.20 +0.4 4,583,946 + Psyr_3845 0.20 +0.1 4,583,946 + Psyr_3845 0.20 -0.5 4,584,015 + Psyr_3845 0.26 +0.8 4,584,015 + Psyr_3845 0.26 -0.7 4,584,015 + Psyr_3845 0.26 -0.1 4,584,015 + Psyr_3845 0.26 -1.4 4,584,015 + Psyr_3845 0.26 -0.6 4,584,016 - Psyr_3845 0.26 -0.4 4,584,192 + Psyr_3845 0.42 +0.6 4,584,192 + Psyr_3845 0.42 +0.2 4,584,192 + Psyr_3845 0.42 +0.9 4,584,192 + Psyr_3845 0.42 +0.5 4,584,192 + Psyr_3845 0.42 -0.1 4,584,192 + Psyr_3845 0.42 +0.6 4,584,193 - Psyr_3845 0.42 +0.2 4,584,193 - Psyr_3845 0.42 -0.4 4,584,193 - Psyr_3845 0.42 -0.4 4,584,193 - Psyr_3845 0.42 +0.1 4,584,193 - Psyr_3845 0.42 +0.1 4,584,193 - Psyr_3845 0.42 -1.2 4,584,193 - Psyr_3845 0.42 +0.6 4,584,393 + Psyr_3845 0.60 +0.2 4,584,393 + Psyr_3845 0.60 -0.4 4,584,394 - Psyr_3845 0.60 +0.4 4,584,643 - Psyr_3845 0.82 +0.5 4,584,759 + -2.3 4,584,760 - +0.1 4,584,801 + +0.2 4,584,801 + -1.2 4,584,843 + -0.1 4,584,843 + +0.8 4,584,844 - -0.2 4,584,844 - -0.5 4,584,844 - +0.3 4,584,939 + -0.2 4,584,939 + -0.8 4,584,940 - -1.4 4,584,940 - +2.4 4,584,940 - +0.5 4,584,940 - +0.2 4,584,964 + +0.6 4,584,964 + +0.2 4,584,976 + +0.6 4,585,070 + -0.3 4,585,071 - -0.5 4,585,091 + -1.1 4,585,091 + +0.1 4,585,091 + +0.3 4,585,091 + -0.0 4,585,091 + -0.7 4,585,091 + +0.1 4,585,091 + -1.9 4,585,092 - +1.4 4,585,092 - +1.0 4,585,092 - +1.3 4,585,092 - +1.2 4,585,092 - -1.3 4,585,092 - +0.3 4,585,092 - +0.3 4,585,129 + -0.3 4,585,129 + +0.6 4,585,129 + +0.2 4,585,129 + -0.3 4,585,130 - -0.7 4,585,130 - -1.2 4,585,133 + -0.2 4,585,133 + +0.6 4,585,133 + +0.6 4,585,133 + -0.7 4,585,133 + -0.3 4,585,134 - +0.1 4,585,134 - +0.4 4,585,134 - -0.1 4,585,134 - -0.9 4,585,134 - +0.2 4,585,134 - -1.2 4,585,134 - +1.3 4,585,134 - -0.1 4,585,134 - +0.1 4,585,134 - -0.5 4,585,134 - -0.4 4,585,134 - +0.3 4,585,134 - +0.3 4,585,134 - +0.4 4,585,134 - +0.1 4,585,166 + Psyr_3846 0.10 -0.0 4,585,167 - Psyr_3846 0.10 -0.1 4,585,208 + Psyr_3846 0.15 -1.9 4,585,208 + Psyr_3846 0.15 -0.2 4,585,208 + Psyr_3846 0.15 +1.0 4,585,208 + Psyr_3846 0.15 +0.3 4,585,208 + Psyr_3846 0.15 -1.5 4,585,208 + Psyr_3846 0.15 +0.1 4,585,208 + Psyr_3846 0.15 +0.3 4,585,208 + Psyr_3846 0.15 +2.0 4,585,208 + Psyr_3846 0.15 +0.3 4,585,208 + Psyr_3846 0.15 +0.3 4,585,208 + Psyr_3846 0.15 -0.9 4,585,209 - Psyr_3846 0.15 +0.5 4,585,209 - Psyr_3846 0.15 -1.2 4,585,209 - Psyr_3846 0.15 +0.6 4,585,209 - Psyr_3846 0.15 +1.2 4,585,209 - Psyr_3846 0.15 -0.6 4,585,209 - Psyr_3846 0.15 +0.3 4,585,209 - Psyr_3846 0.15 +0.3 4,585,209 - Psyr_3846 0.15 -0.3 4,585,209 - Psyr_3846 0.15 -1.4 4,585,209 - Psyr_3846 0.15 +0.4 4,585,209 - Psyr_3846 0.15 +0.5 4,585,209 - Psyr_3846 0.15 +0.1 4,585,209 - Psyr_3846 0.15 -0.4 4,585,209 - Psyr_3846 0.15 -0.2 4,585,209 - Psyr_3846 0.15 +2.1 4,585,209 - Psyr_3846 0.15 -0.4 4,585,209 - Psyr_3846 0.15 +0.3 4,585,223 + Psyr_3846 0.16 -0.4 4,585,223 + Psyr_3846 0.16 +0.5 4,585,223 + Psyr_3846 0.16 +0.6 4,585,223 + Psyr_3846 0.16 +0.3 4,585,223 + Psyr_3846 0.16 -0.4 4,585,224 - Psyr_3846 0.16 -0.9 4,585,224 - Psyr_3846 0.16 +0.8 4,585,224 - Psyr_3846 0.16 -0.8 4,585,224 - Psyr_3846 0.16 -0.4 4,585,224 - Psyr_3846 0.16 +0.4 4,585,334 + Psyr_3846 0.28 -0.4 4,585,533 - Psyr_3846 0.50 -0.4
Or see this region's nucleotide sequence