Experiment: KB with Tetracycline 0.0015 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3520 and Psyr_3521 are separated by 25 nucleotides Psyr_3521 and Psyr_3522 are separated by 129 nucleotides
Psyr_3520: Psyr_3520 - membrane protein, putative, at 4,195,209 to 4,196,537
_3520
Psyr_3521: Psyr_3521 - transcriptional regulator, LysR family, at 4,196,563 to 4,197,474
_3521
Psyr_3522: Psyr_3522 - L-serine ammonia-lyase, at 4,197,604 to 4,198,980
_3522
Position (kb) 4196
4197
4198 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4195.741 kb on - strand, within Psyr_3520 at 4195.971 kb on + strand, within Psyr_3520 at 4195.971 kb on + strand, within Psyr_3520 at 4195.972 kb on - strand, within Psyr_3520 at 4195.972 kb on - strand, within Psyr_3520 at 4195.972 kb on - strand, within Psyr_3520 at 4195.972 kb on - strand, within Psyr_3520 at 4195.972 kb on - strand, within Psyr_3520 at 4195.972 kb on - strand, within Psyr_3520 at 4195.972 kb on - strand, within Psyr_3520 at 4196.172 kb on + strand, within Psyr_3520 at 4196.172 kb on + strand, within Psyr_3520 at 4196.172 kb on + strand, within Psyr_3520 at 4196.172 kb on + strand, within Psyr_3520 at 4196.172 kb on + strand, within Psyr_3520 at 4196.172 kb on + strand, within Psyr_3520 at 4196.173 kb on - strand, within Psyr_3520 at 4196.173 kb on - strand, within Psyr_3520 at 4196.173 kb on - strand, within Psyr_3520 at 4196.173 kb on - strand, within Psyr_3520 at 4196.173 kb on - strand, within Psyr_3520 at 4196.173 kb on - strand, within Psyr_3520 at 4196.173 kb on - strand, within Psyr_3520 at 4196.173 kb on - strand, within Psyr_3520 at 4196.173 kb on - strand, within Psyr_3520 at 4196.173 kb on - strand, within Psyr_3520 at 4196.173 kb on - strand, within Psyr_3520 at 4196.181 kb on + strand, within Psyr_3520 at 4196.495 kb on + strand at 4196.841 kb on - strand, within Psyr_3521 at 4196.841 kb on - strand, within Psyr_3521 at 4196.841 kb on - strand, within Psyr_3521 at 4196.859 kb on - strand, within Psyr_3521 at 4196.859 kb on - strand, within Psyr_3521 at 4196.859 kb on - strand, within Psyr_3521 at 4196.859 kb on - strand, within Psyr_3521 at 4196.864 kb on + strand, within Psyr_3521 at 4196.864 kb on + strand, within Psyr_3521 at 4196.865 kb on - strand, within Psyr_3521 at 4196.865 kb on - strand, within Psyr_3521 at 4196.865 kb on - strand, within Psyr_3521 at 4196.865 kb on - strand, within Psyr_3521 at 4196.865 kb on - strand, within Psyr_3521 at 4196.865 kb on - strand, within Psyr_3521 at 4197.206 kb on + strand, within Psyr_3521 at 4197.231 kb on + strand, within Psyr_3521 at 4197.500 kb on + strand at 4197.500 kb on + strand at 4197.609 kb on + strand at 4198.030 kb on + strand, within Psyr_3522 at 4198.030 kb on + strand, within Psyr_3522 at 4198.031 kb on - strand, within Psyr_3522 at 4198.031 kb on - strand, within Psyr_3522 at 4198.031 kb on - strand, within Psyr_3522 at 4198.031 kb on - strand, within Psyr_3522 at 4198.033 kb on + strand, within Psyr_3522 at 4198.033 kb on + strand, within Psyr_3522 at 4198.373 kb on + strand, within Psyr_3522
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Tetracycline 0.0015 ug/ml remove 4,195,741 - Psyr_3520 0.40 -1.6 4,195,971 + Psyr_3520 0.57 +1.9 4,195,971 + Psyr_3520 0.57 +0.6 4,195,972 - Psyr_3520 0.57 +1.1 4,195,972 - Psyr_3520 0.57 +0.3 4,195,972 - Psyr_3520 0.57 +1.3 4,195,972 - Psyr_3520 0.57 -0.8 4,195,972 - Psyr_3520 0.57 +0.0 4,195,972 - Psyr_3520 0.57 +0.2 4,195,972 - Psyr_3520 0.57 +1.1 4,196,172 + Psyr_3520 0.72 +0.1 4,196,172 + Psyr_3520 0.72 -0.6 4,196,172 + Psyr_3520 0.72 +0.5 4,196,172 + Psyr_3520 0.72 +0.0 4,196,172 + Psyr_3520 0.72 +0.1 4,196,172 + Psyr_3520 0.72 +1.1 4,196,173 - Psyr_3520 0.73 +0.5 4,196,173 - Psyr_3520 0.73 -1.3 4,196,173 - Psyr_3520 0.73 +0.8 4,196,173 - Psyr_3520 0.73 -0.2 4,196,173 - Psyr_3520 0.73 +0.4 4,196,173 - Psyr_3520 0.73 -0.1 4,196,173 - Psyr_3520 0.73 +0.7 4,196,173 - Psyr_3520 0.73 -0.1 4,196,173 - Psyr_3520 0.73 -1.2 4,196,173 - Psyr_3520 0.73 +1.1 4,196,173 - Psyr_3520 0.73 +0.6 4,196,181 + Psyr_3520 0.73 +2.6 4,196,495 + -0.8 4,196,841 - Psyr_3521 0.30 +0.0 4,196,841 - Psyr_3521 0.30 +0.0 4,196,841 - Psyr_3521 0.30 -1.0 4,196,859 - Psyr_3521 0.32 +0.3 4,196,859 - Psyr_3521 0.32 -1.0 4,196,859 - Psyr_3521 0.32 +0.0 4,196,859 - Psyr_3521 0.32 +1.2 4,196,864 + Psyr_3521 0.33 -0.4 4,196,864 + Psyr_3521 0.33 -0.2 4,196,865 - Psyr_3521 0.33 -2.2 4,196,865 - Psyr_3521 0.33 -0.8 4,196,865 - Psyr_3521 0.33 -0.8 4,196,865 - Psyr_3521 0.33 +0.0 4,196,865 - Psyr_3521 0.33 +1.7 4,196,865 - Psyr_3521 0.33 -0.7 4,197,206 + Psyr_3521 0.71 -1.6 4,197,231 + Psyr_3521 0.73 -0.8 4,197,500 + -0.9 4,197,500 + +0.3 4,197,609 + -1.0 4,198,030 + Psyr_3522 0.31 -0.6 4,198,030 + Psyr_3522 0.31 -2.0 4,198,031 - Psyr_3522 0.31 +0.4 4,198,031 - Psyr_3522 0.31 -0.9 4,198,031 - Psyr_3522 0.31 -0.4 4,198,031 - Psyr_3522 0.31 +0.2 4,198,033 + Psyr_3522 0.31 +0.1 4,198,033 + Psyr_3522 0.31 -0.1 4,198,373 + Psyr_3522 0.56 +0.0
Or see this region's nucleotide sequence