Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3184

Experiment: KB with Tetracycline 0.0015 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3183 and Psyr_3184 are separated by 30 nucleotidesPsyr_3184 and Psyr_3185 are separated by 225 nucleotides Psyr_3183: Psyr_3183 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 3,810,762 to 3,813,035 _3183 Psyr_3184: Psyr_3184 - ATP-dependent Clp protease adaptor protein ClpS, at 3,813,066 to 3,813,428 _3184 Psyr_3185: Psyr_3185 - cold-shock DNA-binding protein family, at 3,813,654 to 3,813,932 _3185 Position (kb) 3813 3814Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3812.506 kb on + strand, within Psyr_3183at 3812.613 kb on - strand, within Psyr_3183at 3812.626 kb on + strand, within Psyr_3183at 3812.626 kb on + strand, within Psyr_3183at 3812.627 kb on - strand, within Psyr_3183at 3812.627 kb on - strand, within Psyr_3183at 3812.627 kb on - strand, within Psyr_3183at 3812.627 kb on - strand, within Psyr_3183at 3812.627 kb on - strand, within Psyr_3183at 3812.663 kb on + strand, within Psyr_3183at 3812.664 kb on - strand, within Psyr_3183at 3812.673 kb on + strand, within Psyr_3183at 3812.712 kb on + strand, within Psyr_3183at 3812.712 kb on + strand, within Psyr_3183at 3812.713 kb on - strand, within Psyr_3183at 3812.713 kb on - strand, within Psyr_3183at 3813.031 kb on - strandat 3813.035 kb on + strandat 3813.035 kb on + strandat 3813.035 kb on + strandat 3813.035 kb on + strandat 3813.036 kb on - strandat 3813.036 kb on - strandat 3813.036 kb on - strandat 3813.036 kb on - strandat 3813.036 kb on - strandat 3813.036 kb on - strandat 3813.036 kb on - strandat 3813.259 kb on - strand, within Psyr_3184at 3813.280 kb on + strand, within Psyr_3184at 3813.307 kb on + strand, within Psyr_3184at 3813.307 kb on + strand, within Psyr_3184at 3813.307 kb on + strand, within Psyr_3184at 3813.307 kb on + strand, within Psyr_3184at 3813.308 kb on - strand, within Psyr_3184at 3813.308 kb on - strand, within Psyr_3184at 3813.488 kb on + strandat 3813.489 kb on - strandat 3813.532 kb on - strandat 3813.541 kb on - strandat 3813.541 kb on - strandat 3813.619 kb on - strandat 3813.619 kb on - strandat 3813.960 kb on + strandat 3813.960 kb on + strandat 3813.960 kb on + strandat 3813.960 kb on + strandat 3813.960 kb on + strandat 3813.960 kb on + strandat 3813.960 kb on + strandat 3813.960 kb on + strandat 3813.960 kb on + strandat 3813.961 kb on - strandat 3813.961 kb on - strandat 3813.961 kb on - strandat 3814.024 kb on + strandat 3814.051 kb on + strandat 3814.052 kb on - strandat 3814.079 kb on + strandat 3814.079 kb on + strandat 3814.079 kb on + strandat 3814.079 kb on + strandat 3814.079 kb on + strandat 3814.079 kb on + strandat 3814.080 kb on - strandat 3814.080 kb on - strandat 3814.295 kb on + strandat 3814.295 kb on + strandat 3814.295 kb on + strandat 3814.319 kb on + strandat 3814.321 kb on + strandat 3814.321 kb on + strandat 3814.321 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Tetracycline 0.0015 ug/ml
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3,812,506 + Psyr_3183 0.77 -1.0
3,812,613 - Psyr_3183 0.81 +0.0
3,812,626 + Psyr_3183 0.82 -0.9
3,812,626 + Psyr_3183 0.82 -1.3
3,812,627 - Psyr_3183 0.82 +0.6
3,812,627 - Psyr_3183 0.82 +1.5
3,812,627 - Psyr_3183 0.82 +0.8
3,812,627 - Psyr_3183 0.82 +1.2
3,812,627 - Psyr_3183 0.82 -1.5
3,812,663 + Psyr_3183 0.84 +0.5
3,812,664 - Psyr_3183 0.84 +1.0
3,812,673 + Psyr_3183 0.84 +0.9
3,812,712 + Psyr_3183 0.86 +2.0
3,812,712 + Psyr_3183 0.86 -2.4
3,812,713 - Psyr_3183 0.86 +0.0
3,812,713 - Psyr_3183 0.86 +1.5
3,813,031 - +1.5
3,813,035 + -0.1
3,813,035 + -1.9
3,813,035 + +1.5
3,813,035 + +0.1
3,813,036 - +0.1
3,813,036 - +0.2
3,813,036 - -1.3
3,813,036 - +0.3
3,813,036 - +0.0
3,813,036 - -0.8
3,813,036 - +0.0
3,813,259 - Psyr_3184 0.53 -1.9
3,813,280 + Psyr_3184 0.59 -1.5
3,813,307 + Psyr_3184 0.66 +0.0
3,813,307 + Psyr_3184 0.66 -1.5
3,813,307 + Psyr_3184 0.66 +0.5
3,813,307 + Psyr_3184 0.66 -0.1
3,813,308 - Psyr_3184 0.67 -0.1
3,813,308 - Psyr_3184 0.67 -1.8
3,813,488 + +0.6
3,813,489 - +2.2
3,813,532 - +0.7
3,813,541 - +0.6
3,813,541 - +0.6
3,813,619 - +0.5
3,813,619 - +2.1
3,813,960 + -1.3
3,813,960 + -1.1
3,813,960 + -2.5
3,813,960 + -1.3
3,813,960 + +0.6
3,813,960 + -1.3
3,813,960 + -0.2
3,813,960 + -0.1
3,813,960 + -1.2
3,813,961 - -0.7
3,813,961 - -1.9
3,813,961 - +0.0
3,814,024 + +1.5
3,814,051 + -2.0
3,814,052 - +0.5
3,814,079 + -2.8
3,814,079 + -0.4
3,814,079 + -1.7
3,814,079 + -2.8
3,814,079 + +0.9
3,814,079 + -2.0
3,814,080 - +0.0
3,814,080 - +1.8
3,814,295 + -0.4
3,814,295 + +1.5
3,814,295 + +1.3
3,814,319 + -1.9
3,814,321 + +0.9
3,814,321 + -0.3
3,814,321 + -1.7

Or see this region's nucleotide sequence