Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2124

Experiment: KB with Tetracycline 0.0015 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2122 and Psyr_2123 are separated by 11 nucleotidesPsyr_2123 and Psyr_2124 are separated by 87 nucleotidesPsyr_2124 and Psyr_2125 are separated by 24 nucleotides Psyr_2122: Psyr_2122 - protocatechuate 3,4-dioxygenase, beta subunit, at 2,479,963 to 2,480,682 _2122 Psyr_2123: Psyr_2123 - protocatechuate 3,4-dioxygenase, alpha subunit, at 2,480,694 to 2,481,296 _2123 Psyr_2124: Psyr_2124 - Benzoate transport, at 2,481,384 to 2,482,733 _2124 Psyr_2125: Psyr_2125 - 3-carboxy-cis,cis-muconate cycloisomerase, at 2,482,758 to 2,484,119 _2125 Position (kb) 2481 2482 2483Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2480.500 kb on + strand, within Psyr_2122at 2480.637 kb on + strandat 2480.895 kb on + strand, within Psyr_2123at 2480.896 kb on - strand, within Psyr_2123at 2480.896 kb on - strand, within Psyr_2123at 2481.101 kb on + strand, within Psyr_2123at 2481.102 kb on - strand, within Psyr_2123at 2481.123 kb on + strand, within Psyr_2123at 2481.124 kb on - strand, within Psyr_2123at 2481.124 kb on - strand, within Psyr_2123at 2481.124 kb on - strand, within Psyr_2123at 2481.223 kb on - strand, within Psyr_2123at 2481.277 kb on + strandat 2481.370 kb on - strandat 2481.370 kb on - strandat 2481.417 kb on - strandat 2481.723 kb on + strand, within Psyr_2124at 2481.723 kb on + strand, within Psyr_2124at 2481.723 kb on + strand, within Psyr_2124at 2481.724 kb on - strand, within Psyr_2124at 2481.724 kb on - strand, within Psyr_2124at 2481.724 kb on - strand, within Psyr_2124at 2481.724 kb on - strand, within Psyr_2124at 2481.724 kb on - strand, within Psyr_2124at 2481.724 kb on - strand, within Psyr_2124at 2481.819 kb on + strand, within Psyr_2124at 2481.819 kb on + strand, within Psyr_2124at 2481.819 kb on + strand, within Psyr_2124at 2481.819 kb on + strand, within Psyr_2124at 2481.820 kb on - strand, within Psyr_2124at 2481.820 kb on - strand, within Psyr_2124at 2481.820 kb on - strand, within Psyr_2124at 2482.167 kb on + strand, within Psyr_2124at 2482.168 kb on - strand, within Psyr_2124at 2482.168 kb on - strand, within Psyr_2124at 2482.200 kb on + strand, within Psyr_2124at 2482.201 kb on - strand, within Psyr_2124at 2482.201 kb on - strand, within Psyr_2124at 2482.201 kb on - strand, within Psyr_2124at 2482.201 kb on - strand, within Psyr_2124at 2482.201 kb on - strand, within Psyr_2124at 2482.224 kb on + strand, within Psyr_2124at 2482.225 kb on - strand, within Psyr_2124at 2482.359 kb on + strand, within Psyr_2124at 2482.791 kb on + strandat 2482.791 kb on + strandat 2482.791 kb on + strandat 2482.792 kb on - strandat 2482.792 kb on - strandat 2483.130 kb on - strand, within Psyr_2125

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Tetracycline 0.0015 ug/ml
remove
2,480,500 + Psyr_2122 0.75 +0.4
2,480,637 + -0.4
2,480,895 + Psyr_2123 0.33 -0.8
2,480,896 - Psyr_2123 0.33 -0.2
2,480,896 - Psyr_2123 0.33 +0.3
2,481,101 + Psyr_2123 0.67 -0.8
2,481,102 - Psyr_2123 0.68 +0.2
2,481,123 + Psyr_2123 0.71 +3.1
2,481,124 - Psyr_2123 0.71 +0.0
2,481,124 - Psyr_2123 0.71 -2.6
2,481,124 - Psyr_2123 0.71 +0.0
2,481,223 - Psyr_2123 0.88 -2.0
2,481,277 + -0.3
2,481,370 - -0.4
2,481,370 - -0.3
2,481,417 - +1.2
2,481,723 + Psyr_2124 0.25 -0.2
2,481,723 + Psyr_2124 0.25 -0.1
2,481,723 + Psyr_2124 0.25 -1.5
2,481,724 - Psyr_2124 0.25 -0.3
2,481,724 - Psyr_2124 0.25 +0.5
2,481,724 - Psyr_2124 0.25 -0.1
2,481,724 - Psyr_2124 0.25 +0.5
2,481,724 - Psyr_2124 0.25 +0.1
2,481,724 - Psyr_2124 0.25 -0.1
2,481,819 + Psyr_2124 0.32 +0.6
2,481,819 + Psyr_2124 0.32 -0.8
2,481,819 + Psyr_2124 0.32 +0.2
2,481,819 + Psyr_2124 0.32 +0.2
2,481,820 - Psyr_2124 0.32 +0.6
2,481,820 - Psyr_2124 0.32 +1.5
2,481,820 - Psyr_2124 0.32 +0.7
2,482,167 + Psyr_2124 0.58 +0.5
2,482,168 - Psyr_2124 0.58 +0.3
2,482,168 - Psyr_2124 0.58 +1.1
2,482,200 + Psyr_2124 0.60 -0.5
2,482,201 - Psyr_2124 0.61 +0.7
2,482,201 - Psyr_2124 0.61 +0.7
2,482,201 - Psyr_2124 0.61 +1.1
2,482,201 - Psyr_2124 0.61 +0.0
2,482,201 - Psyr_2124 0.61 -1.7
2,482,224 + Psyr_2124 0.62 +0.3
2,482,225 - Psyr_2124 0.62 +1.1
2,482,359 + Psyr_2124 0.72 +0.4
2,482,791 + -0.1
2,482,791 + -0.8
2,482,791 + -0.4
2,482,792 - +0.6
2,482,792 - +0.1
2,483,130 - Psyr_2125 0.27 +1.5

Or see this region's nucleotide sequence