Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1569

Experiment: KB with Tetracycline 0.0015 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1567 and Psyr_1568 are separated by 4 nucleotidesPsyr_1568 and Psyr_1569 are separated by 105 nucleotidesPsyr_1569 and Psyr_1570 are separated by 66 nucleotidesPsyr_1570 and Psyr_1571 overlap by 4 nucleotides Psyr_1567: Psyr_1567 - Uncharacterized conserved protein UCP006173, at 1,763,312 to 1,763,761 _1567 Psyr_1568: Psyr_1568 - conserved hypothetical protein, at 1,763,766 to 1,764,146 _1568 Psyr_1569: Psyr_1569 - conserved hypothetical protein, at 1,764,252 to 1,764,752 _1569 Psyr_1570: Psyr_1570 - Copper resistance B precursor, at 1,764,819 to 1,765,727 _1570 Psyr_1571: Psyr_1571 - Twin-arginine translocation pathway signal:Copper-resistance protein CopA, at 1,765,724 to 1,767,502 _1571 Position (kb) 1764 1765Strain fitness (log2 ratio) -2 -1 0 1 2at 1763.264 kb on + strandat 1763.265 kb on - strandat 1763.271 kb on - strandat 1763.447 kb on + strand, within Psyr_1567at 1763.447 kb on + strand, within Psyr_1567at 1763.448 kb on - strand, within Psyr_1567at 1763.448 kb on - strand, within Psyr_1567at 1763.450 kb on + strand, within Psyr_1567at 1763.677 kb on + strand, within Psyr_1567at 1763.678 kb on - strand, within Psyr_1567at 1763.678 kb on - strand, within Psyr_1567at 1763.678 kb on - strand, within Psyr_1567at 1763.738 kb on + strandat 1763.738 kb on + strandat 1763.768 kb on - strandat 1764.164 kb on + strandat 1764.164 kb on + strandat 1764.164 kb on + strandat 1764.165 kb on - strandat 1764.165 kb on - strandat 1764.167 kb on + strandat 1764.167 kb on + strandat 1764.167 kb on + strandat 1764.167 kb on + strandat 1764.167 kb on + strandat 1764.168 kb on - strandat 1764.168 kb on - strandat 1764.168 kb on - strandat 1764.168 kb on - strandat 1764.314 kb on + strand, within Psyr_1569at 1764.315 kb on - strand, within Psyr_1569at 1764.315 kb on - strand, within Psyr_1569at 1764.315 kb on - strand, within Psyr_1569at 1764.315 kb on - strand, within Psyr_1569at 1764.335 kb on - strand, within Psyr_1569at 1764.335 kb on - strand, within Psyr_1569at 1764.388 kb on + strand, within Psyr_1569at 1764.388 kb on + strand, within Psyr_1569at 1764.388 kb on + strand, within Psyr_1569at 1764.388 kb on + strand, within Psyr_1569at 1764.388 kb on + strand, within Psyr_1569at 1764.388 kb on + strand, within Psyr_1569at 1764.388 kb on + strand, within Psyr_1569at 1764.388 kb on + strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.389 kb on - strand, within Psyr_1569at 1764.452 kb on + strand, within Psyr_1569at 1764.452 kb on + strand, within Psyr_1569at 1764.452 kb on + strand, within Psyr_1569at 1764.452 kb on + strand, within Psyr_1569at 1764.452 kb on + strand, within Psyr_1569at 1764.453 kb on - strand, within Psyr_1569at 1764.453 kb on - strand, within Psyr_1569at 1764.453 kb on - strand, within Psyr_1569at 1764.454 kb on + strand, within Psyr_1569at 1764.454 kb on + strand, within Psyr_1569at 1764.454 kb on + strand, within Psyr_1569at 1764.454 kb on + strand, within Psyr_1569at 1764.455 kb on - strand, within Psyr_1569at 1764.455 kb on - strand, within Psyr_1569at 1764.455 kb on - strand, within Psyr_1569at 1764.478 kb on + strand, within Psyr_1569at 1764.643 kb on + strand, within Psyr_1569at 1764.643 kb on + strand, within Psyr_1569at 1764.643 kb on + strand, within Psyr_1569at 1764.643 kb on + strand, within Psyr_1569at 1764.644 kb on - strand, within Psyr_1569at 1764.644 kb on - strand, within Psyr_1569at 1764.719 kb on - strandat 1764.783 kb on + strandat 1764.785 kb on + strandat 1764.785 kb on + strandat 1764.785 kb on + strandat 1764.785 kb on + strandat 1764.785 kb on + strandat 1764.785 kb on + strandat 1764.786 kb on - strandat 1764.786 kb on - strandat 1764.805 kb on - strandat 1764.887 kb on - strandat 1764.932 kb on - strand, within Psyr_1570at 1764.932 kb on - strand, within Psyr_1570at 1764.932 kb on - strand, within Psyr_1570at 1765.087 kb on + strand, within Psyr_1570at 1765.346 kb on + strand, within Psyr_1570at 1765.432 kb on + strand, within Psyr_1570at 1765.432 kb on + strand, within Psyr_1570at 1765.432 kb on + strand, within Psyr_1570at 1765.433 kb on - strand, within Psyr_1570at 1765.433 kb on - strand, within Psyr_1570at 1765.480 kb on + strand, within Psyr_1570at 1765.481 kb on - strand, within Psyr_1570at 1765.481 kb on - strand, within Psyr_1570

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Tetracycline 0.0015 ug/ml
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1,763,264 + +0.1
1,763,265 - +0.7
1,763,271 - +2.2
1,763,447 + Psyr_1567 0.30 -0.7
1,763,447 + Psyr_1567 0.30 -0.1
1,763,448 - Psyr_1567 0.30 +0.1
1,763,448 - Psyr_1567 0.30 +1.7
1,763,450 + Psyr_1567 0.31 +0.1
1,763,677 + Psyr_1567 0.81 -0.4
1,763,678 - Psyr_1567 0.81 +1.0
1,763,678 - Psyr_1567 0.81 -0.3
1,763,678 - Psyr_1567 0.81 -1.7
1,763,738 + +0.7
1,763,738 + +1.0
1,763,768 - +0.1
1,764,164 + -0.3
1,764,164 + +0.4
1,764,164 + -0.3
1,764,165 - +1.4
1,764,165 - -0.2
1,764,167 + -1.6
1,764,167 + -0.1
1,764,167 + +1.3
1,764,167 + +0.5
1,764,167 + -0.5
1,764,168 - +0.1
1,764,168 - -0.7
1,764,168 - -2.0
1,764,168 - -1.2
1,764,314 + Psyr_1569 0.12 -0.5
1,764,315 - Psyr_1569 0.13 +0.1
1,764,315 - Psyr_1569 0.13 -0.9
1,764,315 - Psyr_1569 0.13 -1.2
1,764,315 - Psyr_1569 0.13 +0.5
1,764,335 - Psyr_1569 0.17 -0.7
1,764,335 - Psyr_1569 0.17 -0.2
1,764,388 + Psyr_1569 0.27 +1.1
1,764,388 + Psyr_1569 0.27 +0.1
1,764,388 + Psyr_1569 0.27 -1.0
1,764,388 + Psyr_1569 0.27 -0.7
1,764,388 + Psyr_1569 0.27 +0.6
1,764,388 + Psyr_1569 0.27 +0.8
1,764,388 + Psyr_1569 0.27 -2.0
1,764,388 + Psyr_1569 0.27 +0.1
1,764,389 - Psyr_1569 0.27 +2.5
1,764,389 - Psyr_1569 0.27 -0.5
1,764,389 - Psyr_1569 0.27 -0.2
1,764,389 - Psyr_1569 0.27 +2.7
1,764,389 - Psyr_1569 0.27 +0.7
1,764,389 - Psyr_1569 0.27 -0.5
1,764,452 + Psyr_1569 0.40 -1.4
1,764,452 + Psyr_1569 0.40 -0.4
1,764,452 + Psyr_1569 0.40 -1.3
1,764,452 + Psyr_1569 0.40 +0.1
1,764,452 + Psyr_1569 0.40 -0.0
1,764,453 - Psyr_1569 0.40 +0.9
1,764,453 - Psyr_1569 0.40 +0.0
1,764,453 - Psyr_1569 0.40 +0.5
1,764,454 + Psyr_1569 0.40 -0.3
1,764,454 + Psyr_1569 0.40 +1.5
1,764,454 + Psyr_1569 0.40 -0.5
1,764,454 + Psyr_1569 0.40 +0.7
1,764,455 - Psyr_1569 0.41 -0.5
1,764,455 - Psyr_1569 0.41 +0.1
1,764,455 - Psyr_1569 0.41 -1.2
1,764,478 + Psyr_1569 0.45 -1.8
1,764,643 + Psyr_1569 0.78 -0.9
1,764,643 + Psyr_1569 0.78 -1.0
1,764,643 + Psyr_1569 0.78 -1.2
1,764,643 + Psyr_1569 0.78 +1.3
1,764,644 - Psyr_1569 0.78 -0.3
1,764,644 - Psyr_1569 0.78 +0.5
1,764,719 - -0.4
1,764,783 + -1.5
1,764,785 + +0.4
1,764,785 + -0.2
1,764,785 + -0.7
1,764,785 + -1.4
1,764,785 + -0.2
1,764,785 + -0.3
1,764,786 - +1.3
1,764,786 - +0.7
1,764,805 - +1.1
1,764,887 - +0.5
1,764,932 - Psyr_1570 0.12 -0.3
1,764,932 - Psyr_1570 0.12 +0.8
1,764,932 - Psyr_1570 0.12 +1.7
1,765,087 + Psyr_1570 0.29 -0.9
1,765,346 + Psyr_1570 0.58 +2.1
1,765,432 + Psyr_1570 0.67 -0.1
1,765,432 + Psyr_1570 0.67 +0.6
1,765,432 + Psyr_1570 0.67 +0.1
1,765,433 - Psyr_1570 0.68 -0.9
1,765,433 - Psyr_1570 0.68 -1.2
1,765,480 + Psyr_1570 0.73 +0.3
1,765,481 - Psyr_1570 0.73 -0.8
1,765,481 - Psyr_1570 0.73 -1.2

Or see this region's nucleotide sequence