Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1175

Experiment: KB with Tetracycline 0.0015 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1174 and Psyr_1175 are separated by 410 nucleotidesPsyr_1175 and Psyr_1176 are separated by 231 nucleotides Psyr_1174: Psyr_1174 - Sugar transporter, at 1,327,638 to 1,329,059 _1174 Psyr_1175: Psyr_1175 - Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal, at 1,329,470 to 1,330,096 _1175 Psyr_1176: Psyr_1176 - Integrase, catalytic region, at 1,330,328 to 1,331,164 _1176 Position (kb) 1329 1330 1331Strain fitness (log2 ratio) -2 -1 0 1at 1328.491 kb on + strand, within Psyr_1174at 1328.492 kb on - strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.510 kb on + strand, within Psyr_1174at 1328.511 kb on - strand, within Psyr_1174at 1328.511 kb on - strand, within Psyr_1174at 1328.546 kb on - strand, within Psyr_1174at 1328.546 kb on - strand, within Psyr_1174at 1328.795 kb on + strand, within Psyr_1174at 1328.795 kb on + strand, within Psyr_1174at 1328.795 kb on + strand, within Psyr_1174at 1328.795 kb on + strand, within Psyr_1174at 1328.796 kb on - strand, within Psyr_1174at 1328.796 kb on - strand, within Psyr_1174at 1328.796 kb on - strand, within Psyr_1174at 1328.796 kb on - strand, within Psyr_1174at 1328.796 kb on - strand, within Psyr_1174at 1328.797 kb on + strand, within Psyr_1174at 1328.797 kb on + strand, within Psyr_1174at 1328.798 kb on - strand, within Psyr_1174at 1328.798 kb on - strand, within Psyr_1174at 1328.985 kb on - strandat 1329.047 kb on + strandat 1329.048 kb on - strandat 1329.050 kb on + strandat 1329.050 kb on + strandat 1329.050 kb on + strandat 1329.050 kb on + strandat 1329.051 kb on - strandat 1329.051 kb on - strandat 1329.051 kb on - strandat 1329.099 kb on + strandat 1329.099 kb on + strandat 1329.099 kb on + strandat 1329.099 kb on + strandat 1329.100 kb on - strandat 1329.100 kb on - strandat 1329.116 kb on + strandat 1329.136 kb on + strandat 1329.137 kb on - strandat 1329.145 kb on - strandat 1329.206 kb on + strandat 1329.306 kb on + strandat 1329.398 kb on + strandat 1329.398 kb on + strandat 1329.399 kb on - strandat 1329.399 kb on - strandat 1329.736 kb on + strand, within Psyr_1175at 1329.741 kb on - strand, within Psyr_1175at 1329.741 kb on - strand, within Psyr_1175at 1329.741 kb on - strand, within Psyr_1175at 1329.749 kb on + strand, within Psyr_1175at 1329.749 kb on + strand, within Psyr_1175at 1329.750 kb on - strand, within Psyr_1175at 1329.750 kb on - strand, within Psyr_1175at 1329.750 kb on - strand, within Psyr_1175at 1329.875 kb on + strand, within Psyr_1175at 1329.875 kb on + strand, within Psyr_1175at 1329.875 kb on + strand, within Psyr_1175at 1329.875 kb on + strand, within Psyr_1175at 1329.875 kb on + strand, within Psyr_1175at 1329.875 kb on + strand, within Psyr_1175at 1329.876 kb on - strand, within Psyr_1175at 1329.876 kb on - strand, within Psyr_1175at 1329.914 kb on + strand, within Psyr_1175at 1329.915 kb on - strand, within Psyr_1175at 1329.915 kb on - strand, within Psyr_1175at 1330.079 kb on + strandat 1330.080 kb on - strandat 1330.129 kb on - strandat 1330.219 kb on + strandat 1330.267 kb on + strandat 1330.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Tetracycline 0.0015 ug/ml
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1,328,491 + Psyr_1174 0.60 -1.4
1,328,492 - Psyr_1174 0.60 -0.7
1,328,510 + Psyr_1174 0.61 -1.8
1,328,510 + Psyr_1174 0.61 +0.7
1,328,510 + Psyr_1174 0.61 -0.9
1,328,511 - Psyr_1174 0.61 -0.4
1,328,511 - Psyr_1174 0.61 +1.2
1,328,546 - Psyr_1174 0.64 -0.1
1,328,546 - Psyr_1174 0.64 +0.1
1,328,795 + Psyr_1174 0.81 -1.8
1,328,795 + Psyr_1174 0.81 +0.7
1,328,795 + Psyr_1174 0.81 +0.1
1,328,795 + Psyr_1174 0.81 +0.3
1,328,796 - Psyr_1174 0.81 -0.3
1,328,796 - Psyr_1174 0.81 +1.1
1,328,796 - Psyr_1174 0.81 +1.7
1,328,796 - Psyr_1174 0.81 +0.9
1,328,796 - Psyr_1174 0.81 +0.1
1,328,797 + Psyr_1174 0.82 -1.8
1,328,797 + Psyr_1174 0.82 +1.2
1,328,798 - Psyr_1174 0.82 -0.3
1,328,798 - Psyr_1174 0.82 +0.1
1,328,985 - +1.2
1,329,047 + +0.1
1,329,048 - -0.3
1,329,050 + -0.0
1,329,050 + -0.1
1,329,050 + +0.8
1,329,050 + +0.6
1,329,051 - -1.3
1,329,051 - +0.1
1,329,051 - +0.7
1,329,099 + +1.7
1,329,099 + -0.9
1,329,099 + -0.2
1,329,099 + -0.3
1,329,100 - +0.1
1,329,100 - +0.6
1,329,116 + -0.4
1,329,136 + +0.0
1,329,137 - +0.7
1,329,145 - +1.7
1,329,206 + +0.3
1,329,306 + +0.1
1,329,398 + -0.4
1,329,398 + +1.2
1,329,399 - +0.7
1,329,399 - -0.1
1,329,736 + Psyr_1175 0.42 -0.7
1,329,741 - Psyr_1175 0.43 -0.9
1,329,741 - Psyr_1175 0.43 +0.9
1,329,741 - Psyr_1175 0.43 +0.4
1,329,749 + Psyr_1175 0.44 +0.7
1,329,749 + Psyr_1175 0.44 -0.7
1,329,750 - Psyr_1175 0.45 -0.1
1,329,750 - Psyr_1175 0.45 -0.8
1,329,750 - Psyr_1175 0.45 -0.1
1,329,875 + Psyr_1175 0.65 -0.1
1,329,875 + Psyr_1175 0.65 -0.3
1,329,875 + Psyr_1175 0.65 -2.0
1,329,875 + Psyr_1175 0.65 +0.7
1,329,875 + Psyr_1175 0.65 -0.1
1,329,875 + Psyr_1175 0.65 +1.4
1,329,876 - Psyr_1175 0.65 -0.1
1,329,876 - Psyr_1175 0.65 +0.2
1,329,914 + Psyr_1175 0.71 +0.3
1,329,915 - Psyr_1175 0.71 +0.4
1,329,915 - Psyr_1175 0.71 +1.0
1,330,079 + +0.4
1,330,080 - +0.0
1,330,129 - +0.5
1,330,219 + +0.5
1,330,267 + +1.2
1,330,268 - -0.5

Or see this region's nucleotide sequence