Strain Fitness in Pseudomonas sp. S08-1 around OH686_15820

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_15815 and OH686_15820 are separated by 15 nucleotidesOH686_15820 and OH686_15825 are separated by 62 nucleotidesOH686_15825 and OH686_15830 are separated by 96 nucleotides OH686_15815: OH686_15815 - DNA topoisomerase IV, B subunit, at 3,297,596 to 3,299,494 _15815 OH686_15820: OH686_15820 - Esterase YqiA, at 3,299,510 to 3,300,118 _15820 OH686_15825: OH686_15825 - 3',5'-cyclic-nucleotide phosphodiesterase , at 3,300,181 to 3,300,996 _15825 OH686_15830: OH686_15830 - Uncharacterized protein YqiB, at 3,301,093 to 3,301,539 _15830 Position (kb) 3299 3300 3301Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3299.508 kb on + strandat 3299.509 kb on - strandat 3299.509 kb on - strandat 3299.509 kb on - strandat 3299.509 kb on - strandat 3299.509 kb on - strandat 3299.509 kb on - strandat 3299.511 kb on + strandat 3299.511 kb on + strandat 3299.511 kb on + strandat 3299.511 kb on + strandat 3299.512 kb on - strandat 3299.512 kb on - strandat 3299.512 kb on - strandat 3299.512 kb on - strandat 3299.512 kb on - strandat 3299.601 kb on + strand, within OH686_15820at 3299.601 kb on + strand, within OH686_15820at 3299.601 kb on + strand, within OH686_15820at 3299.602 kb on - strand, within OH686_15820at 3299.602 kb on - strand, within OH686_15820at 3299.602 kb on - strand, within OH686_15820at 3299.646 kb on + strand, within OH686_15820at 3299.646 kb on + strand, within OH686_15820at 3299.646 kb on + strand, within OH686_15820at 3299.793 kb on + strand, within OH686_15820at 3299.793 kb on + strand, within OH686_15820at 3299.793 kb on + strand, within OH686_15820at 3299.793 kb on + strand, within OH686_15820at 3299.793 kb on + strand, within OH686_15820at 3299.793 kb on + strand, within OH686_15820at 3299.793 kb on + strand, within OH686_15820at 3299.793 kb on + strand, within OH686_15820at 3299.793 kb on + strand, within OH686_15820at 3299.793 kb on + strand, within OH686_15820at 3299.794 kb on - strand, within OH686_15820at 3299.794 kb on - strand, within OH686_15820at 3299.794 kb on - strand, within OH686_15820at 3299.794 kb on - strand, within OH686_15820at 3299.794 kb on - strand, within OH686_15820at 3299.794 kb on - strand, within OH686_15820at 3299.794 kb on - strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.796 kb on + strand, within OH686_15820at 3299.797 kb on - strand, within OH686_15820at 3299.797 kb on - strand, within OH686_15820at 3299.797 kb on - strand, within OH686_15820at 3299.797 kb on - strand, within OH686_15820at 3299.797 kb on - strand, within OH686_15820at 3299.901 kb on + strand, within OH686_15820at 3299.901 kb on + strand, within OH686_15820at 3299.901 kb on + strand, within OH686_15820at 3299.901 kb on + strand, within OH686_15820at 3299.901 kb on + strand, within OH686_15820at 3299.901 kb on + strand, within OH686_15820at 3299.902 kb on - strand, within OH686_15820at 3299.902 kb on - strand, within OH686_15820at 3299.902 kb on - strand, within OH686_15820at 3299.902 kb on - strand, within OH686_15820at 3299.904 kb on + strand, within OH686_15820at 3299.905 kb on - strand, within OH686_15820at 3299.905 kb on - strand, within OH686_15820at 3299.905 kb on - strand, within OH686_15820at 3300.098 kb on - strandat 3300.099 kb on + strandat 3300.099 kb on + strandat 3300.099 kb on + strandat 3300.099 kb on + strandat 3300.099 kb on + strandat 3300.099 kb on + strandat 3300.099 kb on + strandat 3300.099 kb on + strandat 3300.099 kb on + strandat 3300.099 kb on + strandat 3300.099 kb on + strandat 3300.099 kb on + strandat 3300.099 kb on + strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.100 kb on - strandat 3300.131 kb on + strandat 3300.131 kb on + strandat 3300.132 kb on - strandat 3300.132 kb on - strandat 3300.132 kb on - strandat 3300.138 kb on + strandat 3300.138 kb on + strandat 3300.138 kb on + strandat 3300.182 kb on + strandat 3300.182 kb on + strandat 3300.182 kb on + strandat 3300.182 kb on + strandat 3300.182 kb on + strandat 3300.182 kb on + strandat 3300.182 kb on + strandat 3300.182 kb on + strandat 3300.182 kb on + strandat 3300.183 kb on - strandat 3300.183 kb on - strandat 3300.183 kb on - strandat 3300.183 kb on - strandat 3300.183 kb on - strandat 3300.183 kb on - strandat 3300.183 kb on - strandat 3300.183 kb on - strandat 3300.183 kb on - strandat 3300.183 kb on - strandat 3300.183 kb on - strandat 3300.183 kb on - strandat 3300.183 kb on - strandat 3300.183 kb on - strandat 3300.183 kb on - strandat 3300.185 kb on + strandat 3300.185 kb on + strandat 3300.185 kb on + strandat 3300.186 kb on - strandat 3300.200 kb on + strandat 3300.200 kb on + strandat 3300.201 kb on - strandat 3300.201 kb on - strandat 3300.201 kb on - strandat 3300.201 kb on - strandat 3300.201 kb on - strandat 3300.201 kb on - strandat 3301.026 kb on + strandat 3301.027 kb on - strandat 3301.027 kb on - strandat 3301.027 kb on - strandat 3301.027 kb on - strandat 3301.027 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
3,299,508 + -0.5
3,299,509 - -0.0
3,299,509 - -2.5
3,299,509 - +0.4
3,299,509 - +0.4
3,299,509 - +1.0
3,299,509 - -0.5
3,299,511 + +0.5
3,299,511 + -0.3
3,299,511 + -0.3
3,299,511 + -1.3
3,299,512 - -0.5
3,299,512 - +1.9
3,299,512 - -1.0
3,299,512 - +0.7
3,299,512 - +0.2
3,299,601 + OH686_15820 0.15 +0.5
3,299,601 + OH686_15820 0.15 -1.7
3,299,601 + OH686_15820 0.15 -0.3
3,299,602 - OH686_15820 0.15 +1.1
3,299,602 - OH686_15820 0.15 -0.4
3,299,602 - OH686_15820 0.15 -1.0
3,299,646 + OH686_15820 0.22 -0.2
3,299,646 + OH686_15820 0.22 +0.9
3,299,646 + OH686_15820 0.22 +0.0
3,299,793 + OH686_15820 0.46 -0.9
3,299,793 + OH686_15820 0.46 -1.1
3,299,793 + OH686_15820 0.46 -1.1
3,299,793 + OH686_15820 0.46 -0.8
3,299,793 + OH686_15820 0.46 -1.4
3,299,793 + OH686_15820 0.46 -1.2
3,299,793 + OH686_15820 0.46 +0.9
3,299,793 + OH686_15820 0.46 +0.0
3,299,793 + OH686_15820 0.46 -0.0
3,299,793 + OH686_15820 0.46 -0.1
3,299,794 - OH686_15820 0.47 +0.6
3,299,794 - OH686_15820 0.47 +0.9
3,299,794 - OH686_15820 0.47 -1.7
3,299,794 - OH686_15820 0.47 +0.5
3,299,794 - OH686_15820 0.47 -0.2
3,299,794 - OH686_15820 0.47 +0.7
3,299,794 - OH686_15820 0.47 -0.1
3,299,796 + OH686_15820 0.47 -0.2
3,299,796 + OH686_15820 0.47 -1.6
3,299,796 + OH686_15820 0.47 -0.3
3,299,796 + OH686_15820 0.47 +0.6
3,299,796 + OH686_15820 0.47 -1.7
3,299,796 + OH686_15820 0.47 -0.4
3,299,796 + OH686_15820 0.47 -0.3
3,299,796 + OH686_15820 0.47 +0.3
3,299,796 + OH686_15820 0.47 +0.3
3,299,796 + OH686_15820 0.47 -0.2
3,299,796 + OH686_15820 0.47 +0.9
3,299,796 + OH686_15820 0.47 -0.5
3,299,796 + OH686_15820 0.47 +0.2
3,299,796 + OH686_15820 0.47 -0.3
3,299,796 + OH686_15820 0.47 +0.7
3,299,796 + OH686_15820 0.47 -1.6
3,299,797 - OH686_15820 0.47 +0.4
3,299,797 - OH686_15820 0.47 -0.6
3,299,797 - OH686_15820 0.47 -0.0
3,299,797 - OH686_15820 0.47 +0.3
3,299,797 - OH686_15820 0.47 +0.5
3,299,901 + OH686_15820 0.64 -1.3
3,299,901 + OH686_15820 0.64 -0.3
3,299,901 + OH686_15820 0.64 -0.1
3,299,901 + OH686_15820 0.64 -0.5
3,299,901 + OH686_15820 0.64 -0.0
3,299,901 + OH686_15820 0.64 -0.4
3,299,902 - OH686_15820 0.64 +0.6
3,299,902 - OH686_15820 0.64 +0.1
3,299,902 - OH686_15820 0.64 +0.1
3,299,902 - OH686_15820 0.64 +0.5
3,299,904 + OH686_15820 0.65 -0.3
3,299,905 - OH686_15820 0.65 +0.3
3,299,905 - OH686_15820 0.65 +0.8
3,299,905 - OH686_15820 0.65 -1.1
3,300,098 - -0.1
3,300,099 + -2.2
3,300,099 + -0.1
3,300,099 + +0.4
3,300,099 + -1.3
3,300,099 + -0.8
3,300,099 + -2.8
3,300,099 + -3.3
3,300,099 + -1.1
3,300,099 + +0.5
3,300,099 + +0.3
3,300,099 + -0.8
3,300,099 + -0.5
3,300,099 + -0.5
3,300,100 - +0.5
3,300,100 - -0.3
3,300,100 - -0.1
3,300,100 - +0.4
3,300,100 - +1.7
3,300,100 - +0.1
3,300,100 - -0.0
3,300,100 - +1.6
3,300,100 - -0.0
3,300,100 - -0.0
3,300,100 - -0.5
3,300,100 - +1.0
3,300,100 - +0.4
3,300,100 - -0.1
3,300,100 - +1.2
3,300,100 - +0.1
3,300,100 - +0.5
3,300,131 + +0.0
3,300,131 + -0.9
3,300,132 - -1.0
3,300,132 - -0.7
3,300,132 - -0.4
3,300,138 + +0.3
3,300,138 + +0.0
3,300,138 + -1.8
3,300,182 + -0.1
3,300,182 + +0.4
3,300,182 + -0.7
3,300,182 + +0.8
3,300,182 + -3.2
3,300,182 + -0.1
3,300,182 + -1.0
3,300,182 + +0.3
3,300,182 + -0.5
3,300,183 - -0.9
3,300,183 - +0.5
3,300,183 - -1.8
3,300,183 - -0.0
3,300,183 - +0.4
3,300,183 - +0.6
3,300,183 - -0.1
3,300,183 - +0.3
3,300,183 - +0.0
3,300,183 - -0.1
3,300,183 - +0.0
3,300,183 - +1.7
3,300,183 - +0.9
3,300,183 - +0.2
3,300,183 - +0.2
3,300,185 + -1.3
3,300,185 + -0.7
3,300,185 + +1.4
3,300,186 - -1.0
3,300,200 + -1.1
3,300,200 + -0.1
3,300,201 - +0.3
3,300,201 - -0.5
3,300,201 - +0.0
3,300,201 - -1.8
3,300,201 - -1.8
3,300,201 - -1.6
3,301,026 + -0.2
3,301,027 - -0.2
3,301,027 - +1.8
3,301,027 - -0.5
3,301,027 - -0.9
3,301,027 - -0.5

Or see this region's nucleotide sequence