Strain Fitness in Pseudomonas sp. S08-1 around OH686_11845

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_11840 and OH686_11845 are separated by 100 nucleotidesOH686_11845 and OH686_11850 are separated by 230 nucleotidesOH686_11850 and OH686_11855 are separated by 55 nucleotidesOH686_11855 and OH686_11860 overlap by 4 nucleotides OH686_11840: OH686_11840 - type II secretion system protein D, at 2,496,714 to 2,498,624 _11840 OH686_11845: OH686_11845 - hypothetical protein, at 2,498,725 to 2,498,913 _11845 OH686_11850: OH686_11850 - tRNA-Arg, at 2,499,144 to 2,499,220 _11850 OH686_11855: OH686_11855 - Rubredoxin, at 2,499,276 to 2,499,440 _11855 OH686_11860: OH686_11860 - NAD(P)H oxidoreductase YrkL or Putative NADPH-quinone reductase (modulator of drug activity B) or Flavodoxin 2, at 2,499,437 to 2,500,156 _11860 Position (kb) 2498 2499Strain fitness (log2 ratio) -2 -1 0 1 2at 2497.741 kb on + strand, within OH686_11840at 2497.742 kb on - strand, within OH686_11840at 2497.742 kb on - strand, within OH686_11840at 2497.742 kb on - strand, within OH686_11840at 2497.742 kb on - strand, within OH686_11840at 2497.742 kb on - strand, within OH686_11840at 2497.819 kb on + strand, within OH686_11840at 2497.819 kb on + strand, within OH686_11840at 2497.819 kb on + strand, within OH686_11840at 2497.820 kb on - strand, within OH686_11840at 2497.820 kb on - strand, within OH686_11840at 2497.834 kb on + strand, within OH686_11840at 2497.834 kb on + strand, within OH686_11840at 2497.835 kb on - strand, within OH686_11840at 2497.866 kb on - strand, within OH686_11840at 2497.929 kb on + strand, within OH686_11840at 2497.929 kb on + strand, within OH686_11840at 2497.929 kb on + strand, within OH686_11840at 2497.929 kb on + strand, within OH686_11840at 2497.930 kb on - strand, within OH686_11840at 2497.930 kb on - strand, within OH686_11840at 2497.930 kb on - strand, within OH686_11840at 2497.930 kb on - strand, within OH686_11840at 2497.930 kb on - strand, within OH686_11840at 2497.930 kb on - strand, within OH686_11840at 2498.008 kb on + strand, within OH686_11840at 2498.008 kb on + strand, within OH686_11840at 2498.008 kb on + strand, within OH686_11840at 2498.008 kb on + strand, within OH686_11840at 2498.008 kb on + strand, within OH686_11840at 2498.008 kb on + strand, within OH686_11840at 2498.008 kb on + strand, within OH686_11840at 2498.008 kb on + strand, within OH686_11840at 2498.008 kb on + strand, within OH686_11840at 2498.009 kb on - strand, within OH686_11840at 2498.009 kb on - strand, within OH686_11840at 2498.009 kb on - strand, within OH686_11840at 2498.009 kb on - strand, within OH686_11840at 2498.009 kb on - strand, within OH686_11840at 2498.009 kb on - strand, within OH686_11840at 2498.009 kb on - strand, within OH686_11840at 2498.009 kb on - strand, within OH686_11840at 2498.009 kb on - strand, within OH686_11840at 2498.009 kb on - strand, within OH686_11840at 2498.009 kb on - strand, within OH686_11840at 2498.009 kb on - strand, within OH686_11840at 2498.056 kb on + strand, within OH686_11840at 2498.056 kb on + strand, within OH686_11840at 2498.056 kb on + strand, within OH686_11840at 2498.056 kb on + strand, within OH686_11840at 2498.056 kb on + strand, within OH686_11840at 2498.057 kb on - strand, within OH686_11840at 2498.057 kb on - strand, within OH686_11840at 2498.057 kb on - strand, within OH686_11840at 2498.057 kb on - strand, within OH686_11840at 2498.073 kb on - strand, within OH686_11840at 2498.138 kb on + strand, within OH686_11840at 2498.138 kb on + strand, within OH686_11840at 2498.138 kb on + strand, within OH686_11840at 2498.139 kb on - strand, within OH686_11840at 2498.139 kb on - strand, within OH686_11840at 2498.139 kb on - strand, within OH686_11840at 2498.141 kb on + strand, within OH686_11840at 2498.141 kb on + strand, within OH686_11840at 2498.141 kb on + strand, within OH686_11840at 2498.141 kb on + strand, within OH686_11840at 2498.142 kb on - strand, within OH686_11840at 2498.142 kb on - strand, within OH686_11840at 2498.196 kb on + strand, within OH686_11840at 2498.196 kb on + strand, within OH686_11840at 2498.196 kb on + strand, within OH686_11840at 2498.197 kb on - strand, within OH686_11840at 2498.197 kb on - strand, within OH686_11840at 2498.206 kb on + strand, within OH686_11840at 2498.206 kb on + strand, within OH686_11840at 2498.207 kb on - strand, within OH686_11840at 2498.207 kb on - strand, within OH686_11840at 2498.207 kb on - strand, within OH686_11840at 2498.406 kb on + strand, within OH686_11840at 2498.493 kb on + strandat 2498.493 kb on + strandat 2498.493 kb on + strandat 2498.493 kb on + strandat 2498.493 kb on + strandat 2498.493 kb on + strandat 2498.493 kb on + strandat 2498.493 kb on + strandat 2498.493 kb on + strandat 2498.493 kb on + strandat 2498.493 kb on + strandat 2498.493 kb on + strandat 2498.494 kb on - strandat 2498.494 kb on - strandat 2498.494 kb on - strandat 2498.494 kb on - strandat 2498.494 kb on - strandat 2498.494 kb on - strandat 2498.494 kb on - strandat 2498.494 kb on - strandat 2498.494 kb on - strandat 2498.494 kb on - strandat 2498.539 kb on + strandat 2498.539 kb on + strandat 2498.540 kb on - strandat 2498.540 kb on - strandat 2498.540 kb on - strandat 2498.540 kb on - strandat 2498.540 kb on - strandat 2498.540 kb on - strandat 2498.552 kb on - strandat 2498.636 kb on + strandat 2498.636 kb on + strandat 2498.637 kb on - strandat 2498.637 kb on - strandat 2498.637 kb on - strandat 2498.727 kb on - strandat 2498.890 kb on + strand, within OH686_11845at 2498.890 kb on + strand, within OH686_11845at 2498.891 kb on - strand, within OH686_11845at 2498.891 kb on - strand, within OH686_11845at 2498.891 kb on - strand, within OH686_11845at 2498.891 kb on - strand, within OH686_11845at 2498.954 kb on + strandat 2498.954 kb on + strandat 2498.954 kb on + strandat 2498.954 kb on + strandat 2498.954 kb on + strandat 2498.955 kb on - strandat 2498.955 kb on - strandat 2498.955 kb on - strandat 2498.955 kb on - strandat 2498.955 kb on - strandat 2498.955 kb on - strandat 2498.955 kb on - strandat 2498.957 kb on - strandat 2499.140 kb on + strandat 2499.140 kb on + strandat 2499.141 kb on - strandat 2499.141 kb on - strandat 2499.141 kb on - strandat 2499.141 kb on - strandat 2499.141 kb on - strandat 2499.141 kb on - strandat 2499.141 kb on - strandat 2499.238 kb on + strandat 2499.238 kb on + strandat 2499.238 kb on + strandat 2499.239 kb on - strandat 2499.239 kb on - strandat 2499.239 kb on - strandat 2499.239 kb on - strandat 2499.239 kb on - strandat 2499.403 kb on + strand, within OH686_11855at 2499.403 kb on + strand, within OH686_11855at 2499.403 kb on + strand, within OH686_11855at 2499.403 kb on + strand, within OH686_11855at 2499.403 kb on + strand, within OH686_11855at 2499.403 kb on + strand, within OH686_11855at 2499.403 kb on + strand, within OH686_11855at 2499.404 kb on - strand, within OH686_11855at 2499.404 kb on - strand, within OH686_11855at 2499.404 kb on - strand, within OH686_11855at 2499.404 kb on - strand, within OH686_11855at 2499.404 kb on - strand, within OH686_11855at 2499.404 kb on - strand, within OH686_11855at 2499.404 kb on - strand, within OH686_11855at 2499.404 kb on - strand, within OH686_11855at 2499.534 kb on + strand, within OH686_11860at 2499.534 kb on + strand, within OH686_11860at 2499.535 kb on - strand, within OH686_11860at 2499.535 kb on - strand, within OH686_11860at 2499.535 kb on - strand, within OH686_11860at 2499.535 kb on - strand, within OH686_11860at 2499.535 kb on - strand, within OH686_11860at 2499.582 kb on + strand, within OH686_11860at 2499.582 kb on + strand, within OH686_11860at 2499.582 kb on + strand, within OH686_11860at 2499.582 kb on + strand, within OH686_11860at 2499.582 kb on + strand, within OH686_11860at 2499.582 kb on + strand, within OH686_11860at 2499.582 kb on + strand, within OH686_11860at 2499.582 kb on + strand, within OH686_11860at 2499.583 kb on - strand, within OH686_11860at 2499.583 kb on - strand, within OH686_11860at 2499.583 kb on - strand, within OH686_11860at 2499.583 kb on - strand, within OH686_11860at 2499.583 kb on - strand, within OH686_11860at 2499.583 kb on - strand, within OH686_11860at 2499.583 kb on - strand, within OH686_11860at 2499.583 kb on - strand, within OH686_11860at 2499.583 kb on - strand, within OH686_11860at 2499.630 kb on + strand, within OH686_11860at 2499.630 kb on + strand, within OH686_11860at 2499.630 kb on + strand, within OH686_11860at 2499.630 kb on + strand, within OH686_11860at 2499.631 kb on - strand, within OH686_11860at 2499.631 kb on - strand, within OH686_11860at 2499.631 kb on - strand, within OH686_11860at 2499.631 kb on - strand, within OH686_11860at 2499.631 kb on - strand, within OH686_11860at 2499.631 kb on - strand, within OH686_11860at 2499.771 kb on + strand, within OH686_11860at 2499.771 kb on + strand, within OH686_11860at 2499.771 kb on + strand, within OH686_11860at 2499.772 kb on - strand, within OH686_11860

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,497,741 + OH686_11840 0.54 +0.5
2,497,742 - OH686_11840 0.54 -0.0
2,497,742 - OH686_11840 0.54 +1.4
2,497,742 - OH686_11840 0.54 +2.1
2,497,742 - OH686_11840 0.54 -1.1
2,497,742 - OH686_11840 0.54 +0.6
2,497,819 + OH686_11840 0.58 -0.7
2,497,819 + OH686_11840 0.58 +0.2
2,497,819 + OH686_11840 0.58 +0.4
2,497,820 - OH686_11840 0.58 -0.5
2,497,820 - OH686_11840 0.58 +0.2
2,497,834 + OH686_11840 0.59 -0.4
2,497,834 + OH686_11840 0.59 -0.1
2,497,835 - OH686_11840 0.59 +0.4
2,497,866 - OH686_11840 0.60 +1.2
2,497,929 + OH686_11840 0.64 -2.1
2,497,929 + OH686_11840 0.64 +0.5
2,497,929 + OH686_11840 0.64 +1.4
2,497,929 + OH686_11840 0.64 -1.6
2,497,930 - OH686_11840 0.64 +0.6
2,497,930 - OH686_11840 0.64 +0.4
2,497,930 - OH686_11840 0.64 +1.1
2,497,930 - OH686_11840 0.64 +0.0
2,497,930 - OH686_11840 0.64 -0.4
2,497,930 - OH686_11840 0.64 -0.4
2,498,008 + OH686_11840 0.68 -0.2
2,498,008 + OH686_11840 0.68 +1.1
2,498,008 + OH686_11840 0.68 +0.5
2,498,008 + OH686_11840 0.68 -2.3
2,498,008 + OH686_11840 0.68 -0.0
2,498,008 + OH686_11840 0.68 -0.6
2,498,008 + OH686_11840 0.68 +0.3
2,498,008 + OH686_11840 0.68 +1.1
2,498,008 + OH686_11840 0.68 -0.1
2,498,009 - OH686_11840 0.68 -0.4
2,498,009 - OH686_11840 0.68 +0.8
2,498,009 - OH686_11840 0.68 +0.1
2,498,009 - OH686_11840 0.68 -0.8
2,498,009 - OH686_11840 0.68 -1.1
2,498,009 - OH686_11840 0.68 -0.0
2,498,009 - OH686_11840 0.68 +0.3
2,498,009 - OH686_11840 0.68 +0.7
2,498,009 - OH686_11840 0.68 -0.9
2,498,009 - OH686_11840 0.68 -0.3
2,498,009 - OH686_11840 0.68 +0.1
2,498,009 - OH686_11840 0.68 -0.3
2,498,056 + OH686_11840 0.70 +0.9
2,498,056 + OH686_11840 0.70 +0.4
2,498,056 + OH686_11840 0.70 -0.5
2,498,056 + OH686_11840 0.70 +0.2
2,498,056 + OH686_11840 0.70 -0.1
2,498,057 - OH686_11840 0.70 +0.3
2,498,057 - OH686_11840 0.70 +0.1
2,498,057 - OH686_11840 0.70 +0.2
2,498,057 - OH686_11840 0.70 +0.2
2,498,073 - OH686_11840 0.71 +1.1
2,498,138 + OH686_11840 0.75 +0.4
2,498,138 + OH686_11840 0.75 -0.3
2,498,138 + OH686_11840 0.75 -0.7
2,498,139 - OH686_11840 0.75 -0.3
2,498,139 - OH686_11840 0.75 -1.3
2,498,139 - OH686_11840 0.75 -0.3
2,498,141 + OH686_11840 0.75 +0.1
2,498,141 + OH686_11840 0.75 -0.5
2,498,141 + OH686_11840 0.75 -0.1
2,498,141 + OH686_11840 0.75 -0.3
2,498,142 - OH686_11840 0.75 -0.0
2,498,142 - OH686_11840 0.75 +0.4
2,498,196 + OH686_11840 0.78 +0.5
2,498,196 + OH686_11840 0.78 +0.5
2,498,196 + OH686_11840 0.78 +0.9
2,498,197 - OH686_11840 0.78 -0.8
2,498,197 - OH686_11840 0.78 -1.6
2,498,206 + OH686_11840 0.78 +0.6
2,498,206 + OH686_11840 0.78 +0.1
2,498,207 - OH686_11840 0.78 -0.1
2,498,207 - OH686_11840 0.78 -0.2
2,498,207 - OH686_11840 0.78 +1.0
2,498,406 + OH686_11840 0.89 -0.1
2,498,493 + +0.1
2,498,493 + -1.2
2,498,493 + -0.9
2,498,493 + -0.1
2,498,493 + -0.4
2,498,493 + +0.2
2,498,493 + +0.1
2,498,493 + -1.0
2,498,493 + +0.0
2,498,493 + -0.2
2,498,493 + +0.6
2,498,493 + -0.6
2,498,494 - -0.7
2,498,494 - -0.5
2,498,494 - +0.5
2,498,494 - +0.4
2,498,494 - +0.3
2,498,494 - +0.1
2,498,494 - -0.5
2,498,494 - +0.4
2,498,494 - -0.7
2,498,494 - -0.8
2,498,539 + +0.3
2,498,539 + +0.1
2,498,540 - +0.2
2,498,540 - -1.1
2,498,540 - -0.2
2,498,540 - -1.8
2,498,540 - +0.9
2,498,540 - +1.0
2,498,552 - -0.6
2,498,636 + -0.5
2,498,636 + -0.3
2,498,637 - -0.0
2,498,637 - -0.1
2,498,637 - -0.1
2,498,727 - +0.7
2,498,890 + OH686_11845 0.87 +0.3
2,498,890 + OH686_11845 0.87 -0.9
2,498,891 - OH686_11845 0.88 -1.4
2,498,891 - OH686_11845 0.88 +2.1
2,498,891 - OH686_11845 0.88 -0.3
2,498,891 - OH686_11845 0.88 -0.8
2,498,954 + +0.5
2,498,954 + +0.6
2,498,954 + +0.2
2,498,954 + +1.6
2,498,954 + +0.3
2,498,955 - +0.4
2,498,955 - +0.1
2,498,955 - +0.6
2,498,955 - -0.9
2,498,955 - +0.4
2,498,955 - +0.1
2,498,955 - +0.2
2,498,957 - -0.9
2,499,140 + -0.2
2,499,140 + +1.9
2,499,141 - +0.4
2,499,141 - +1.5
2,499,141 - +0.9
2,499,141 - +0.1
2,499,141 - +2.4
2,499,141 - +0.5
2,499,141 - +1.2
2,499,238 + -1.4
2,499,238 + -0.4
2,499,238 + -1.9
2,499,239 - -0.4
2,499,239 - -0.4
2,499,239 - +0.6
2,499,239 - -2.4
2,499,239 - +1.9
2,499,403 + OH686_11855 0.77 -0.4
2,499,403 + OH686_11855 0.77 -0.6
2,499,403 + OH686_11855 0.77 +0.6
2,499,403 + OH686_11855 0.77 +0.2
2,499,403 + OH686_11855 0.77 +0.1
2,499,403 + OH686_11855 0.77 +0.1
2,499,403 + OH686_11855 0.77 -0.5
2,499,404 - OH686_11855 0.78 +0.8
2,499,404 - OH686_11855 0.78 -0.0
2,499,404 - OH686_11855 0.78 +0.7
2,499,404 - OH686_11855 0.78 +0.9
2,499,404 - OH686_11855 0.78 +0.6
2,499,404 - OH686_11855 0.78 +0.1
2,499,404 - OH686_11855 0.78 +0.5
2,499,404 - OH686_11855 0.78 -0.5
2,499,534 + OH686_11860 0.13 +0.6
2,499,534 + OH686_11860 0.13 +1.9
2,499,535 - OH686_11860 0.14 -0.2
2,499,535 - OH686_11860 0.14 +0.1
2,499,535 - OH686_11860 0.14 +0.5
2,499,535 - OH686_11860 0.14 +0.5
2,499,535 - OH686_11860 0.14 -0.6
2,499,582 + OH686_11860 0.20 -0.3
2,499,582 + OH686_11860 0.20 +1.3
2,499,582 + OH686_11860 0.20 -0.8
2,499,582 + OH686_11860 0.20 -0.1
2,499,582 + OH686_11860 0.20 -0.8
2,499,582 + OH686_11860 0.20 -0.1
2,499,582 + OH686_11860 0.20 +0.6
2,499,582 + OH686_11860 0.20 -0.1
2,499,583 - OH686_11860 0.20 +0.9
2,499,583 - OH686_11860 0.20 -0.0
2,499,583 - OH686_11860 0.20 +0.1
2,499,583 - OH686_11860 0.20 -0.4
2,499,583 - OH686_11860 0.20 +0.3
2,499,583 - OH686_11860 0.20 +0.7
2,499,583 - OH686_11860 0.20 -0.2
2,499,583 - OH686_11860 0.20 -0.3
2,499,583 - OH686_11860 0.20 -0.1
2,499,630 + OH686_11860 0.27 +0.2
2,499,630 + OH686_11860 0.27 +0.5
2,499,630 + OH686_11860 0.27 -1.4
2,499,630 + OH686_11860 0.27 -0.4
2,499,631 - OH686_11860 0.27 +1.1
2,499,631 - OH686_11860 0.27 +0.8
2,499,631 - OH686_11860 0.27 +0.3
2,499,631 - OH686_11860 0.27 -0.3
2,499,631 - OH686_11860 0.27 -0.5
2,499,631 - OH686_11860 0.27 -1.1
2,499,771 + OH686_11860 0.46 -0.2
2,499,771 + OH686_11860 0.46 -0.5
2,499,771 + OH686_11860 0.46 +0.3
2,499,772 - OH686_11860 0.47 -0.3

Or see this region's nucleotide sequence