Strain Fitness in Pseudomonas sp. S08-1 around OH686_10020

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_10015 and OH686_10020 overlap by 32 nucleotidesOH686_10020 and OH686_10025 are separated by 4 nucleotides OH686_10015: OH686_10015 - 3-dehydroquinate synthase, at 2,055,954 to 2,057,138 _10015 OH686_10020: OH686_10020 - Shikimate kinase I , at 2,057,107 to 2,057,622 _10020 OH686_10025: OH686_10025 - Type IV pilus biogenesis protein PilQ, at 2,057,627 to 2,059,753 _10025 Position (kb) 2057 2058Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2057.046 kb on - strandat 2057.081 kb on + strandat 2057.081 kb on + strandat 2057.081 kb on + strandat 2057.081 kb on + strandat 2057.081 kb on + strandat 2057.081 kb on + strandat 2057.081 kb on + strandat 2057.082 kb on - strandat 2057.082 kb on - strandat 2057.082 kb on - strandat 2057.082 kb on - strandat 2057.095 kb on + strandat 2057.095 kb on + strandat 2057.096 kb on - strandat 2057.096 kb on - strandat 2057.096 kb on - strandat 2057.096 kb on - strandat 2057.096 kb on - strandat 2057.280 kb on + strand, within OH686_10020at 2057.280 kb on + strand, within OH686_10020at 2057.330 kb on + strand, within OH686_10020at 2057.330 kb on + strand, within OH686_10020at 2057.330 kb on + strand, within OH686_10020at 2057.330 kb on + strand, within OH686_10020at 2057.330 kb on + strand, within OH686_10020at 2057.331 kb on - strand, within OH686_10020at 2057.331 kb on - strand, within OH686_10020at 2057.332 kb on + strand, within OH686_10020at 2057.332 kb on + strand, within OH686_10020at 2057.332 kb on + strand, within OH686_10020at 2057.332 kb on + strand, within OH686_10020at 2057.332 kb on + strand, within OH686_10020at 2057.332 kb on + strand, within OH686_10020at 2057.332 kb on + strand, within OH686_10020at 2057.332 kb on + strand, within OH686_10020at 2057.332 kb on + strand, within OH686_10020at 2057.332 kb on + strand, within OH686_10020at 2057.333 kb on - strand, within OH686_10020at 2057.333 kb on - strand, within OH686_10020at 2057.333 kb on - strand, within OH686_10020at 2057.333 kb on - strand, within OH686_10020at 2057.333 kb on - strand, within OH686_10020at 2057.333 kb on - strand, within OH686_10020at 2057.333 kb on - strand, within OH686_10020at 2057.508 kb on + strand, within OH686_10020at 2057.587 kb on - strandat 2057.587 kb on - strandat 2057.614 kb on + strandat 2057.614 kb on + strandat 2057.615 kb on - strandat 2057.615 kb on - strandat 2057.628 kb on + strandat 2057.629 kb on - strandat 2057.633 kb on - strandat 2057.636 kb on + strandat 2057.636 kb on + strandat 2057.637 kb on - strandat 2057.637 kb on - strandat 2057.637 kb on - strandat 2057.654 kb on - strandat 2057.672 kb on - strandat 2057.795 kb on + strandat 2057.795 kb on + strandat 2057.795 kb on + strandat 2057.796 kb on - strandat 2057.892 kb on + strand, within OH686_10025at 2057.909 kb on - strand, within OH686_10025at 2057.929 kb on + strand, within OH686_10025at 2058.077 kb on - strand, within OH686_10025at 2058.131 kb on + strand, within OH686_10025at 2058.176 kb on + strand, within OH686_10025at 2058.177 kb on - strand, within OH686_10025at 2058.259 kb on + strand, within OH686_10025at 2058.326 kb on - strand, within OH686_10025at 2058.330 kb on + strand, within OH686_10025at 2058.330 kb on + strand, within OH686_10025at 2058.330 kb on + strand, within OH686_10025at 2058.334 kb on + strand, within OH686_10025at 2058.334 kb on + strand, within OH686_10025at 2058.335 kb on - strand, within OH686_10025at 2058.343 kb on + strand, within OH686_10025at 2058.344 kb on - strand, within OH686_10025at 2058.385 kb on + strand, within OH686_10025at 2058.385 kb on + strand, within OH686_10025at 2058.385 kb on + strand, within OH686_10025at 2058.386 kb on - strand, within OH686_10025at 2058.416 kb on + strand, within OH686_10025at 2058.416 kb on + strand, within OH686_10025at 2058.417 kb on - strand, within OH686_10025at 2058.451 kb on + strand, within OH686_10025at 2058.514 kb on + strand, within OH686_10025at 2058.515 kb on - strand, within OH686_10025at 2058.515 kb on - strand, within OH686_10025at 2058.526 kb on + strand, within OH686_10025at 2058.574 kb on + strand, within OH686_10025at 2058.594 kb on - strand, within OH686_10025at 2058.594 kb on - strand, within OH686_10025at 2058.602 kb on + strand, within OH686_10025at 2058.603 kb on - strand, within OH686_10025at 2058.603 kb on - strand, within OH686_10025at 2058.621 kb on + strand, within OH686_10025at 2058.621 kb on + strand, within OH686_10025

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,057,046 - -0.3
2,057,081 + -4.4
2,057,081 + -2.9
2,057,081 + -2.5
2,057,081 + -3.5
2,057,081 + -2.5
2,057,081 + -0.5
2,057,081 + -0.5
2,057,082 - -0.5
2,057,082 - -0.3
2,057,082 - -1.1
2,057,082 - -0.6
2,057,095 + -0.2
2,057,095 + -0.3
2,057,096 - +0.2
2,057,096 - +0.0
2,057,096 - +0.2
2,057,096 - -1.7
2,057,096 - -0.1
2,057,280 + OH686_10020 0.34 -3.0
2,057,280 + OH686_10020 0.34 -1.3
2,057,330 + OH686_10020 0.43 -2.2
2,057,330 + OH686_10020 0.43 -2.8
2,057,330 + OH686_10020 0.43 -1.9
2,057,330 + OH686_10020 0.43 -2.7
2,057,330 + OH686_10020 0.43 -1.6
2,057,331 - OH686_10020 0.43 -3.2
2,057,331 - OH686_10020 0.43 -2.7
2,057,332 + OH686_10020 0.44 -2.2
2,057,332 + OH686_10020 0.44 -0.7
2,057,332 + OH686_10020 0.44 -2.5
2,057,332 + OH686_10020 0.44 -2.4
2,057,332 + OH686_10020 0.44 -2.3
2,057,332 + OH686_10020 0.44 -3.1
2,057,332 + OH686_10020 0.44 -1.5
2,057,332 + OH686_10020 0.44 -2.8
2,057,332 + OH686_10020 0.44 -2.2
2,057,332 + OH686_10020 0.44 -1.6
2,057,333 - OH686_10020 0.44 -0.3
2,057,333 - OH686_10020 0.44 -2.5
2,057,333 - OH686_10020 0.44 -0.5
2,057,333 - OH686_10020 0.44 -2.7
2,057,333 - OH686_10020 0.44 -0.5
2,057,333 - OH686_10020 0.44 -1.7
2,057,333 - OH686_10020 0.44 -2.0
2,057,508 + OH686_10020 0.78 -3.2
2,057,587 - -2.1
2,057,587 - -0.9
2,057,614 + -4.3
2,057,614 + -2.0
2,057,615 - -1.8
2,057,615 - +1.4
2,057,628 + -1.5
2,057,629 - -0.4
2,057,633 - +0.6
2,057,636 + -0.1
2,057,636 + +0.1
2,057,637 - -0.1
2,057,637 - +0.4
2,057,637 - -1.1
2,057,654 - +0.7
2,057,672 - +1.0
2,057,795 + -1.1
2,057,795 + -4.1
2,057,795 + -1.6
2,057,796 - -0.0
2,057,892 + OH686_10025 0.12 -1.2
2,057,909 - OH686_10025 0.13 +0.5
2,057,929 + OH686_10025 0.14 +0.7
2,058,077 - OH686_10025 0.21 +0.5
2,058,131 + OH686_10025 0.24 -1.8
2,058,176 + OH686_10025 0.26 -1.8
2,058,177 - OH686_10025 0.26 -0.1
2,058,259 + OH686_10025 0.30 -2.7
2,058,326 - OH686_10025 0.33 +0.5
2,058,330 + OH686_10025 0.33 -1.8
2,058,330 + OH686_10025 0.33 -1.3
2,058,330 + OH686_10025 0.33 +0.4
2,058,334 + OH686_10025 0.33 -1.8
2,058,334 + OH686_10025 0.33 -1.9
2,058,335 - OH686_10025 0.33 +0.5
2,058,343 + OH686_10025 0.34 -1.3
2,058,344 - OH686_10025 0.34 +1.5
2,058,385 + OH686_10025 0.36 -1.5
2,058,385 + OH686_10025 0.36 -2.1
2,058,385 + OH686_10025 0.36 -0.9
2,058,386 - OH686_10025 0.36 +0.4
2,058,416 + OH686_10025 0.37 -1.4
2,058,416 + OH686_10025 0.37 -0.5
2,058,417 - OH686_10025 0.37 +0.3
2,058,451 + OH686_10025 0.39 -1.2
2,058,514 + OH686_10025 0.42 -1.2
2,058,515 - OH686_10025 0.42 -0.2
2,058,515 - OH686_10025 0.42 +0.4
2,058,526 + OH686_10025 0.42 -1.3
2,058,574 + OH686_10025 0.45 -0.3
2,058,594 - OH686_10025 0.45 +0.7
2,058,594 - OH686_10025 0.45 +0.9
2,058,602 + OH686_10025 0.46 +0.6
2,058,603 - OH686_10025 0.46 +0.2
2,058,603 - OH686_10025 0.46 +0.5
2,058,621 + OH686_10025 0.47 -1.1
2,058,621 + OH686_10025 0.47 -2.4

Or see this region's nucleotide sequence